Wall clock time and date at job start Tue Mar 31 2020 13:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86796 * 120.00096 * 2 1 4 4 H 1.48504 * 109.47127 * 240.00394 * 3 2 1 5 5 H 1.48500 * 109.47294 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47355 * 120.00319 * 3 2 1 7 7 C 1.39981 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99725 * 197.96718 * 7 2 1 9 9 C 1.41002 * 120.00549 * 17.95964 * 7 2 1 10 10 C 1.40952 * 120.11208 * 24.69779 * 9 7 2 11 11 C 1.36216 * 119.87940 * 180.02562 * 10 9 7 12 12 C 1.39986 * 120.11978 * 359.97438 * 11 10 9 13 13 C 1.47914 * 119.88433 * 180.02562 * 12 11 10 14 14 C 1.40203 * 120.49702 * 179.71783 * 13 12 11 15 15 C 1.38020 * 118.36037 * 179.71261 * 14 13 12 16 16 C 1.39132 * 119.26490 * 0.58915 * 15 14 13 17 17 O 1.35595 * 119.53022 * 179.69989 * 16 15 14 18 18 C 1.42898 * 117.00562 * 179.97438 * 17 16 15 19 19 C 1.53181 * 109.54390 * 269.82276 * 18 17 16 20 20 C 1.53104 * 109.15703 * 183.23555 * 19 18 17 21 21 O 1.42907 * 109.48295 * 57.47463 * 20 19 18 22 22 C 1.42895 * 114.09896 * 298.88584 * 21 20 19 23 23 C 1.53092 * 109.41671 * 61.15804 * 22 21 20 24 24 N 1.32359 * 120.94420 * 359.67636 * 16 15 14 25 25 C 1.31725 * 121.80164 * 0.02562 * 24 16 15 26 26 C 1.39975 * 120.22788 * 0.29391 * 12 11 10 27 27 C 1.36225 * 120.11838 * 359.44569 * 26 12 11 28 28 H 0.96992 * 119.99756 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.05825 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.94120 * 179.97438 * 11 10 9 31 31 H 1.08005 * 120.82368 * 0.02562 * 14 13 12 32 32 H 1.07998 * 120.37005 * 180.31127 * 15 14 13 33 33 H 1.09000 * 109.53994 * 29.99369 * 18 17 16 34 34 H 1.08996 * 109.51818 * 303.05446 * 19 18 17 35 35 H 1.08998 * 109.51977 * 63.24074 * 19 18 17 36 36 H 1.08997 * 109.40962 * 297.49272 * 20 19 18 37 37 H 1.08998 * 109.48051 * 177.49943 * 20 19 18 38 38 H 1.09006 * 109.48128 * 301.17701 * 22 21 20 39 39 H 1.09003 * 109.49106 * 181.15219 * 22 21 20 40 40 H 1.08998 * 109.52578 * 182.48446 * 23 22 21 41 41 H 1.09001 * 109.57169 * 62.33220 * 23 22 21 42 42 H 1.07997 * 119.69052 * 179.97438 * 25 24 16 43 43 H 1.08005 * 119.93756 * 179.70310 * 26 12 11 44 44 H 1.08007 * 120.05793 * 180.25626 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2126 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6963 1.2124 7 6 2.0081 -1.2123 -0.0005 8 1 3.0486 -1.2353 0.2880 9 6 1.3546 -2.4035 -0.3776 10 6 0.2270 -2.3548 -1.2218 11 6 -0.4010 -3.5085 -1.5827 12 6 0.0720 -4.7410 -1.1171 13 6 -0.6135 -5.9905 -1.5126 14 6 -0.1472 -7.2323 -1.0585 15 6 -0.8239 -8.3698 -1.4499 16 6 -1.9300 -8.2496 -2.2853 17 8 -2.5952 -9.3640 -2.6781 18 6 -3.7233 -9.1780 -3.5353 19 6 -4.9883 -9.0095 -2.6881 20 6 -6.2015 -8.8920 -3.6146 21 8 -6.2764 -10.0484 -4.4508 22 6 -5.1414 -10.2289 -5.2999 23 6 -3.8859 -10.4023 -4.4412 24 7 -2.3426 -7.0629 -2.7018 25 6 -1.7302 -5.9516 -2.3480 26 6 1.1881 -4.7945 -0.2739 27 6 1.8265 -3.6470 0.0887 28 1 -0.4849 0.8400 0.0004 29 1 -0.1390 -1.4044 -1.5813 30 1 -1.2653 -3.4722 -2.2292 31 1 0.7172 -7.2970 -0.4142 32 1 -0.4958 -9.3427 -1.1151 33 1 -3.5734 -8.2887 -4.1474 34 1 -5.1100 -9.8766 -2.0388 35 1 -4.9029 -8.1081 -2.0813 36 1 -6.0990 -8.0013 -4.2343 37 1 -7.1096 -8.8165 -3.0165 38 1 -5.0250 -9.3556 -5.9418 39 1 -5.2857 -11.1163 -5.9163 40 1 -3.0129 -10.4960 -5.0871 41 1 -3.9834 -11.2985 -3.8285 42 1 -2.0958 -5.0014 -2.7083 43 1 1.5461 -5.7476 0.0864 44 1 2.6901 -3.6898 0.7360 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241698324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:41 Heat of formation + Delta-G solvation = -41.466614 kcal Electronic energy + Delta-G solvation = -25925.033151 eV Core-core repulsion = 22192.712120 eV Total energy + Delta-G solvation = -3732.321031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.48742 -39.37208 -37.99365 -37.05777 -34.13023 -32.93688 -32.24186 -31.37640 -31.07193 -29.60335 -28.54972 -25.57156 -24.87994 -23.85248 -23.30470 -22.55234 -20.87340 -20.26691 -20.21022 -18.38014 -17.50856 -16.92162 -16.31407 -16.02846 -15.71952 -15.42826 -15.31320 -14.96625 -14.65236 -13.97180 -13.85067 -13.67100 -13.51890 -13.25086 -13.05723 -12.81138 -12.69554 -12.38962 -12.30064 -11.93296 -11.69038 -11.57010 -11.42234 -11.27543 -11.18021 -10.96184 -10.68453 -10.62682 -10.41811 -9.98416 -9.90457 -9.65004 -9.61361 -9.32577 -9.06424 -8.44806 -7.73119 -7.12388 -6.96024 -4.51480 1.38706 1.61535 2.70952 2.93801 2.95968 2.98815 3.12109 3.12929 3.61444 3.74263 4.15201 4.51439 4.55502 4.59937 4.61627 4.70855 4.92285 4.99183 5.12727 5.25224 5.38109 5.39597 5.41770 5.44363 5.48266 5.55246 5.59495 5.73794 5.77777 5.88961 5.94893 6.01965 6.14381 6.25854 6.36886 6.59823 6.75114 6.84608 6.87547 6.90272 7.07764 7.17912 7.41825 7.53909 7.72957 7.84294 7.93128 8.06026 8.26121 8.40106 8.63107 8.75122 9.90224 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026529 B = 0.002171 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.185354 B =12892.692955 C =13649.501078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.444 4.444 8 H 0.083 0.917 9 C 0.119 3.881 10 C -0.171 4.171 11 C -0.075 4.075 12 C -0.201 4.201 13 C -0.053 4.053 14 C -0.075 4.075 15 C -0.174 4.174 16 C 0.270 3.730 17 O -0.306 6.306 18 C 0.093 3.907 19 C -0.171 4.171 20 C 0.066 3.934 21 O -0.384 6.384 22 C 0.066 3.934 23 C -0.154 4.154 24 N -0.530 5.530 25 C 0.105 3.895 26 C -0.063 4.063 27 C -0.229 4.229 28 H 0.286 0.714 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.156 0.844 43 H 0.092 0.908 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.864 -12.509 -6.354 15.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.471 4.471 8 H 0.101 0.899 9 C 0.116 3.884 10 C -0.190 4.190 11 C -0.094 4.094 12 C -0.203 4.203 13 C -0.056 4.056 14 C -0.100 4.100 15 C -0.195 4.195 16 C 0.092 3.908 17 O -0.215 6.215 18 C 0.036 3.964 19 C -0.209 4.209 20 C -0.011 4.011 21 O -0.303 6.303 22 C -0.011 4.011 23 C -0.192 4.192 24 N -0.251 5.251 25 C -0.051 4.051 26 C -0.081 4.081 27 C -0.249 4.249 28 H 0.097 0.903 29 H 0.137 0.863 30 H 0.110 0.890 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.173 0.827 43 H 0.110 0.890 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.923 -12.702 -6.820 16.451 hybrid contribution 1.230 1.087 0.660 1.769 sum -6.693 -11.615 -6.160 14.753 Atomic orbital electron populations 1.69810 1.07785 1.30041 1.32250 1.26052 0.94827 1.01808 0.92070 0.86272 0.80189 0.79599 0.80269 1.18534 1.20078 1.18734 1.19704 0.98372 0.91346 1.37709 0.89927 1.17743 0.90782 0.92103 0.87813 1.20993 0.99608 0.97011 1.01389 1.20482 0.97959 0.92337 0.98619 1.17843 1.01807 0.90259 1.10359 1.19834 0.95328 0.93916 0.96491 1.21436 0.99160 0.90860 0.98541 1.20847 0.96657 1.00031 1.01926 1.19623 0.91401 0.85202 0.94541 1.86202 1.42374 1.28600 1.64296 1.22169 0.83992 0.99163 0.91117 1.22636 0.94881 1.03858 0.99553 1.22559 0.98238 0.88031 0.92290 1.87922 1.41254 1.46280 1.54811 1.22549 0.84644 1.02010 0.91866 1.22329 0.99326 0.98660 0.98882 1.67024 1.33227 0.98318 1.26576 1.22458 0.92523 0.94755 0.95379 1.20360 0.94699 0.96694 0.96343 1.20675 1.04145 0.92850 1.07209 0.90261 0.86282 0.88980 0.84577 0.85122 0.89293 0.90615 0.90017 0.92700 0.88454 0.92799 0.88235 0.90137 0.90152 0.82697 0.89016 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.66 10.96 55.55 0.61 -18.05 16 2 C 0.07 1.70 5.13 -17.33 -0.09 1.61 16 3 Si 0.91 17.28 29.60 -169.99 -5.03 12.25 16 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.28 -5.10 7.11 56.52 0.40 -4.69 16 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.44 -10.93 9.03 -37.88 -0.34 -11.27 16 8 H 0.08 1.94 7.91 -52.49 -0.42 1.52 16 9 C 0.12 2.96 5.57 -106.80 -0.60 2.37 16 10 C -0.17 -4.16 8.63 -39.28 -0.34 -4.50 16 11 C -0.08 -1.66 9.37 -39.65 -0.37 -2.03 16 12 C -0.20 -4.23 5.90 -104.63 -0.62 -4.85 16 13 C -0.05 -1.00 5.90 -104.72 -0.62 -1.61 16 14 C -0.07 -1.23 9.52 -38.92 -0.37 -1.60 16 15 C -0.17 -2.70 10.03 -39.33 -0.39 -3.09 16 16 C 0.27 4.42 7.46 -16.99 -0.13 4.30 16 17 O -0.31 -4.56 9.76 -18.48 -0.18 -4.74 16 18 C 0.09 1.15 2.46 -26.55 -0.07 1.09 16 19 C -0.17 -1.97 5.77 -26.58 -0.15 -2.12 16 20 C 0.07 0.65 6.84 37.21 0.25 0.90 16 21 O -0.38 -4.13 10.77 -35.23 -0.38 -4.51 16 22 C 0.07 0.58 6.84 37.21 0.25 0.83 16 23 C -0.15 -1.52 5.79 -26.60 -0.15 -1.68 16 24 N -0.53 -8.99 8.61 -12.95 -0.11 -9.10 16 25 C 0.10 1.85 10.60 -17.12 -0.18 1.67 16 26 C -0.06 -1.32 9.37 -39.66 -0.37 -1.70 16 27 C -0.23 -5.28 9.73 -39.28 -0.38 -5.66 16 28 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 29 H 0.12 2.97 6.16 -52.49 -0.32 2.65 16 30 H 0.09 1.79 6.20 -52.49 -0.33 1.47 16 31 H 0.14 2.01 6.30 -52.48 -0.33 1.68 16 32 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.09 1.20 6.98 -51.93 -0.36 0.84 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.16 2.55 6.19 -52.49 -0.33 2.23 16 43 H 0.09 1.67 6.24 -52.48 -0.33 1.34 16 44 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -26.69 360.47 -10.09 -36.78 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -5.77 Total: 9.29 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -4.66 Total: -27.35 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.50 Total: -27.15 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.56 Total: -9.25 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -26.69 -10.09 -36.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241698324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.686 kcal (2) G-P(sol) polarization free energy of solvation -26.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds