Wall clock time and date at job start Tue Mar 31 2020 13:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86796 * 120.00096 * 2 1 4 4 H 1.48504 * 109.47127 * 240.00394 * 3 2 1 5 5 H 1.48500 * 109.47294 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47355 * 120.00319 * 3 2 1 7 7 C 1.39981 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99725 * 197.96718 * 7 2 1 9 9 C 1.41002 * 120.00549 * 17.95964 * 7 2 1 10 10 C 1.40952 * 120.11208 * 24.69779 * 9 7 2 11 11 C 1.36216 * 119.87940 * 180.02562 * 10 9 7 12 12 C 1.39986 * 120.11978 * 359.97438 * 11 10 9 13 13 C 1.47914 * 119.88433 * 180.02562 * 12 11 10 14 14 C 1.40203 * 120.49702 * 179.71783 * 13 12 11 15 15 C 1.38020 * 118.36037 * 179.71261 * 14 13 12 16 16 C 1.39132 * 119.26490 * 0.58915 * 15 14 13 17 17 O 1.35595 * 119.53022 * 179.69989 * 16 15 14 18 18 C 1.42898 * 117.00562 * 179.97438 * 17 16 15 19 19 C 1.53181 * 109.54390 * 269.82276 * 18 17 16 20 20 C 1.53104 * 109.15703 * 183.23555 * 19 18 17 21 21 O 1.42907 * 109.48295 * 57.47463 * 20 19 18 22 22 C 1.42895 * 114.09896 * 298.88584 * 21 20 19 23 23 C 1.53092 * 109.41671 * 61.15804 * 22 21 20 24 24 N 1.32359 * 120.94420 * 359.67636 * 16 15 14 25 25 C 1.31725 * 121.80164 * 0.02562 * 24 16 15 26 26 C 1.39975 * 120.22788 * 0.29391 * 12 11 10 27 27 C 1.36225 * 120.11838 * 359.44569 * 26 12 11 28 28 H 0.96992 * 119.99756 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.05825 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.94120 * 179.97438 * 11 10 9 31 31 H 1.08005 * 120.82368 * 0.02562 * 14 13 12 32 32 H 1.07998 * 120.37005 * 180.31127 * 15 14 13 33 33 H 1.09000 * 109.53994 * 29.99369 * 18 17 16 34 34 H 1.08996 * 109.51818 * 303.05446 * 19 18 17 35 35 H 1.08998 * 109.51977 * 63.24074 * 19 18 17 36 36 H 1.08997 * 109.40962 * 297.49272 * 20 19 18 37 37 H 1.08998 * 109.48051 * 177.49943 * 20 19 18 38 38 H 1.09006 * 109.48128 * 301.17701 * 22 21 20 39 39 H 1.09003 * 109.49106 * 181.15219 * 22 21 20 40 40 H 1.08998 * 109.52578 * 182.48446 * 23 22 21 41 41 H 1.09001 * 109.57169 * 62.33220 * 23 22 21 42 42 H 1.07997 * 119.69052 * 179.97438 * 25 24 16 43 43 H 1.08005 * 119.93756 * 179.70310 * 26 12 11 44 44 H 1.08007 * 120.05793 * 180.25626 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2126 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6963 1.2124 7 6 2.0081 -1.2123 -0.0005 8 1 3.0486 -1.2353 0.2880 9 6 1.3546 -2.4035 -0.3776 10 6 0.2270 -2.3548 -1.2218 11 6 -0.4010 -3.5085 -1.5827 12 6 0.0720 -4.7410 -1.1171 13 6 -0.6135 -5.9905 -1.5126 14 6 -0.1472 -7.2323 -1.0585 15 6 -0.8239 -8.3698 -1.4499 16 6 -1.9300 -8.2496 -2.2853 17 8 -2.5952 -9.3640 -2.6781 18 6 -3.7233 -9.1780 -3.5353 19 6 -4.9883 -9.0095 -2.6881 20 6 -6.2015 -8.8920 -3.6146 21 8 -6.2764 -10.0484 -4.4508 22 6 -5.1414 -10.2289 -5.2999 23 6 -3.8859 -10.4023 -4.4412 24 7 -2.3426 -7.0629 -2.7018 25 6 -1.7302 -5.9516 -2.3480 26 6 1.1881 -4.7945 -0.2739 27 6 1.8265 -3.6470 0.0887 28 1 -0.4849 0.8400 0.0004 29 1 -0.1390 -1.4044 -1.5813 30 1 -1.2653 -3.4722 -2.2292 31 1 0.7172 -7.2970 -0.4142 32 1 -0.4958 -9.3427 -1.1151 33 1 -3.5734 -8.2887 -4.1474 34 1 -5.1100 -9.8766 -2.0388 35 1 -4.9029 -8.1081 -2.0813 36 1 -6.0990 -8.0013 -4.2343 37 1 -7.1096 -8.8165 -3.0165 38 1 -5.0250 -9.3556 -5.9418 39 1 -5.2857 -11.1163 -5.9163 40 1 -3.0129 -10.4960 -5.0871 41 1 -3.9834 -11.2985 -3.8285 42 1 -2.0958 -5.0014 -2.7083 43 1 1.5461 -5.7476 0.0864 44 1 2.6901 -3.6898 0.7360 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241698324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:40 Heat of formation + Delta-G solvation = -54.842889 kcal Electronic energy + Delta-G solvation = -25925.613190 eV Core-core repulsion = 22192.712120 eV Total energy + Delta-G solvation = -3732.901070 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.70312 -40.42509 -39.44134 -38.37958 -35.79574 -33.94453 -33.65766 -32.54439 -32.16556 -31.30371 -30.11408 -27.05999 -26.05167 -24.75196 -24.54150 -23.97490 -22.36342 -21.88297 -21.26727 -19.66110 -19.17635 -18.06497 -17.42717 -17.15188 -16.99573 -16.82533 -16.48489 -16.07680 -15.79194 -15.31118 -15.08663 -14.92147 -14.85558 -14.54380 -14.47371 -14.27456 -13.92431 -13.68835 -13.53748 -13.37011 -13.17022 -12.90971 -12.75280 -12.56425 -12.36208 -12.29383 -12.16614 -11.59623 -11.56074 -11.39816 -11.32882 -11.12851 -10.82279 -10.78694 -10.41801 -9.93337 -9.48417 -8.79581 -8.60864 -6.32284 -0.04454 0.30037 1.11674 1.20662 1.38469 1.49727 1.58096 2.00585 2.17402 2.60727 2.88107 3.00740 3.33888 3.67814 3.68334 3.77508 3.91665 3.96962 4.04209 4.06081 4.10598 4.20713 4.22479 4.41070 4.44841 4.49389 4.63012 4.67527 4.71617 4.76435 4.79981 4.91108 4.97456 5.01945 5.05623 5.10156 5.14879 5.18308 5.34331 5.47496 5.54100 5.67958 5.96816 6.06520 6.15600 6.18940 6.30708 6.33541 6.62865 6.85518 6.90124 6.98967 8.23081 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026529 B = 0.002171 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.185354 B =12892.692955 C =13649.501078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.034 3.966 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.484 4.484 8 H 0.081 0.919 9 C 0.086 3.914 10 C -0.194 4.194 11 C -0.084 4.084 12 C -0.189 4.189 13 C -0.082 4.082 14 C -0.063 4.063 15 C -0.174 4.174 16 C 0.275 3.725 17 O -0.309 6.309 18 C 0.085 3.915 19 C -0.166 4.166 20 C 0.068 3.932 21 O -0.397 6.397 22 C 0.064 3.936 23 C -0.148 4.148 24 N -0.537 5.537 25 C 0.106 3.894 26 C -0.068 4.068 27 C -0.244 4.244 28 H 0.292 0.708 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.112 0.888 38 H 0.061 0.939 39 H 0.123 0.877 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.160 0.840 43 H 0.125 0.875 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 -14.741 -6.993 17.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.513 4.513 8 H 0.100 0.900 9 C 0.083 3.917 10 C -0.213 4.213 11 C -0.102 4.102 12 C -0.191 4.191 13 C -0.084 4.084 14 C -0.088 4.088 15 C -0.194 4.194 16 C 0.096 3.904 17 O -0.217 6.217 18 C 0.028 3.972 19 C -0.205 4.205 20 C -0.009 4.009 21 O -0.316 6.316 22 C -0.012 4.012 23 C -0.186 4.186 24 N -0.260 5.260 25 C -0.049 4.049 26 C -0.086 4.086 27 C -0.263 4.263 28 H 0.103 0.897 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.174 0.826 32 H 0.178 0.822 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.130 0.870 38 H 0.079 0.921 39 H 0.141 0.859 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.177 0.823 43 H 0.143 0.857 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.377 -14.959 -7.465 18.699 hybrid contribution 1.198 1.387 0.753 1.981 sum -7.179 -13.572 -6.712 16.757 Atomic orbital electron populations 1.69860 1.09125 1.31103 1.33580 1.26852 0.95511 1.04763 0.91116 0.85217 0.78819 0.75351 0.80206 1.18405 1.19147 1.18188 1.19908 0.98656 0.92507 1.40181 0.90048 1.18091 0.91625 0.93257 0.88729 1.20969 1.00543 0.97233 1.02553 1.20728 0.98425 0.92230 0.98835 1.18127 1.01237 0.90947 1.08807 1.19770 0.96425 0.93722 0.98501 1.21686 0.99276 0.90164 0.97642 1.21161 0.95992 1.01066 1.01206 1.19998 0.91346 0.85357 0.93691 1.86219 1.43007 1.27958 1.64511 1.22432 0.83463 1.00142 0.91139 1.22584 0.95306 1.02974 0.99595 1.22593 0.98023 0.88081 0.92188 1.87913 1.42097 1.46467 1.55075 1.22732 0.83453 1.03490 0.91566 1.22331 1.00420 0.97194 0.98613 1.67083 1.33404 0.98448 1.27058 1.22563 0.92179 0.95321 0.94857 1.20688 0.94400 0.97499 0.96002 1.20888 1.04789 0.93031 1.07639 0.89725 0.87891 0.87106 0.82570 0.82162 0.90371 0.90772 0.91515 0.92323 0.87030 0.92114 0.85892 0.89209 0.90137 0.82264 0.85712 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.80 10.96 21.83 0.24 -40.56 16 2 C 0.03 1.66 5.13 85.27 0.44 2.10 16 3 Si 0.98 36.32 29.60 68.60 2.03 38.35 16 4 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 5 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 6 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 7 C -0.48 -25.01 9.03 23.37 0.21 -24.79 16 8 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 9 C 0.09 4.46 5.57 -21.28 -0.12 4.34 16 10 C -0.19 -9.85 8.63 22.46 0.19 -9.66 16 11 C -0.08 -3.76 9.37 22.22 0.21 -3.55 16 12 C -0.19 -7.87 5.90 -19.87 -0.12 -7.99 16 13 C -0.08 -2.91 5.90 -19.93 -0.12 -3.03 16 14 C -0.06 -1.88 9.52 22.70 0.22 -1.66 16 15 C -0.17 -4.82 10.03 22.43 0.22 -4.59 16 16 C 0.27 8.33 7.46 84.83 0.63 8.96 16 17 O -0.31 -8.46 9.76 -89.05 -0.87 -9.33 16 18 C 0.08 1.95 2.46 30.71 0.08 2.02 16 19 C -0.17 -3.58 5.77 30.69 0.18 -3.40 16 20 C 0.07 1.21 6.84 72.02 0.49 1.70 16 21 O -0.40 -7.60 10.77 -148.98 -1.60 -9.20 16 22 C 0.06 0.94 6.84 72.01 0.49 1.44 16 23 C -0.15 -2.55 5.79 30.68 0.18 -2.38 16 24 N -0.54 -17.38 8.61 -307.75 -2.65 -20.03 16 25 C 0.11 3.62 10.60 85.02 0.90 4.52 16 26 C -0.07 -2.81 9.37 22.22 0.21 -2.61 16 27 C -0.24 -11.43 9.73 22.46 0.22 -11.21 16 28 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 29 H 0.10 5.46 6.16 -2.91 -0.02 5.44 16 30 H 0.11 4.37 6.20 -2.91 -0.02 4.36 16 31 H 0.16 4.01 6.30 -2.91 -0.02 3.99 16 32 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 33 H 0.08 1.99 6.98 -2.39 -0.02 1.97 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.16 5.15 6.19 -2.91 -0.02 5.13 16 43 H 0.13 4.22 6.24 -2.91 -0.02 4.20 16 44 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -59.01 360.47 2.68 -56.33 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 1.02 Total: 34.22 kcal Atomic # 6 Polarization: -54.29 SS G_CDS: 4.51 Total: -49.78 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -2.41 Total: -60.59 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -2.47 Total: -18.54 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Total: -59.01 2.68 -56.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241698324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.490 kcal (2) G-P(sol) polarization free energy of solvation -59.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds