Wall clock time and date at job start Tue Mar 31 2020 13:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30788 * 1 3 3 Si 1.86802 * 120.00435 * 2 1 4 4 H 1.48497 * 109.46834 * 239.99854 * 3 2 1 5 5 H 1.48507 * 109.46696 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47234 * 119.99536 * 3 2 1 7 7 C 1.40056 * 119.99553 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99352 * 164.46510 * 7 2 1 9 9 C 1.40849 * 120.00091 * 344.47005 * 7 2 1 10 10 C 1.40760 * 120.33555 * 333.05580 * 9 7 2 11 11 C 1.36407 * 119.98841 * 179.97438 * 10 9 7 12 12 C 1.38955 * 120.69754 * 359.97438 * 11 10 9 13 13 C 1.38032 * 120.68202 * 0.02562 * 12 11 10 14 14 C 1.39222 * 119.98254 * 359.97438 * 13 12 11 15 15 C 1.47792 * 120.34251 * 180.02562 * 14 13 12 16 16 C 1.40253 * 120.50523 * 309.70234 * 15 14 13 17 17 C 1.38010 * 118.35532 * 179.76046 * 16 15 14 18 18 C 1.39130 * 119.27071 * 0.53185 * 17 16 15 19 19 O 1.35608 * 119.52206 * 179.72189 * 18 17 16 20 20 C 1.42900 * 117.00145 * 179.97438 * 19 18 17 21 21 C 1.53172 * 109.54598 * 269.82687 * 20 19 18 22 22 C 1.53104 * 109.16053 * 183.24183 * 21 20 19 23 23 O 1.42906 * 109.48442 * 57.47025 * 22 21 20 24 24 C 1.42900 * 114.10025 * 298.89159 * 23 22 21 25 25 C 1.53094 * 109.41388 * 61.16062 * 24 23 22 26 26 N 1.32363 * 120.95983 * 359.70687 * 18 17 16 27 27 C 1.31720 * 121.79765 * 0.02562 * 26 18 17 28 28 H 0.97003 * 119.99552 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.00361 * 359.95673 * 10 9 7 30 30 H 1.08006 * 119.65194 * 180.02562 * 11 10 9 31 31 H 1.08004 * 119.65383 * 179.72358 * 12 11 10 32 32 H 1.08004 * 120.01417 * 179.97438 * 13 12 11 33 33 H 1.07999 * 120.81982 * 0.02562 * 16 15 14 34 34 H 1.08002 * 120.36549 * 180.26453 * 17 16 15 35 35 H 1.09002 * 109.53788 * 30.00559 * 20 19 18 36 36 H 1.09003 * 109.52557 * 303.05925 * 21 20 19 37 37 H 1.08997 * 109.52208 * 63.24529 * 21 20 19 38 38 H 1.09005 * 109.40619 * 297.49688 * 22 21 20 39 39 H 1.08994 * 109.48781 * 177.50050 * 22 21 20 40 40 H 1.08998 * 109.48293 * 301.17476 * 24 23 22 41 41 H 1.09004 * 109.49054 * 181.14770 * 24 23 22 42 42 H 1.09004 * 109.52419 * 182.48490 * 25 24 23 43 43 H 1.08991 * 109.57720 * 62.32587 * 25 24 23 44 44 H 1.08003 * 119.68815 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0958 1.6962 -1.2125 5 1 1.2770 2.7464 -0.0006 6 1 3.0957 1.6964 1.2125 7 6 2.0081 -1.2130 0.0005 8 1 3.0585 -1.2301 -0.2500 9 6 1.3423 -2.4103 0.3277 10 6 0.2132 -2.3892 1.1679 11 6 -0.4265 -3.5530 1.4797 12 6 0.0238 -4.7670 0.9755 13 6 1.1282 -4.8204 0.1492 14 6 1.8025 -3.6499 -0.1874 15 6 2.9855 -3.6978 -1.0720 16 6 4.0344 -4.5914 -0.8105 17 6 5.1155 -4.6023 -1.6682 18 6 5.1352 -3.7264 -2.7490 19 8 6.1975 -3.7289 -3.5919 20 6 6.1614 -2.8079 -4.6839 21 6 5.5012 -3.4744 -5.8947 22 6 5.5399 -2.5094 -7.0827 23 8 6.8940 -2.1428 -7.3551 24 6 7.5457 -1.4724 -6.2744 25 6 7.5896 -2.3966 -5.0547 26 7 4.1319 -2.8909 -2.9667 27 6 3.0786 -2.8504 -2.1769 28 1 -0.4849 0.8401 -0.0004 29 1 -0.1464 -1.4519 1.5658 30 1 -1.2926 -3.5304 2.1245 31 1 -0.4928 -5.6788 1.2369 32 1 1.4691 -5.7700 -0.2363 33 1 3.9950 -5.2575 0.0387 34 1 5.9391 -5.2803 -1.4999 35 1 5.5903 -1.9248 -4.3973 36 1 6.0427 -4.3855 -6.1494 37 1 4.4662 -3.7194 -5.6563 38 1 4.9628 -1.6163 -6.8429 39 1 5.1113 -2.9948 -7.9595 40 1 6.9949 -0.5658 -6.0240 41 1 8.5620 -1.2105 -6.5689 42 1 8.0467 -1.8714 -4.2160 43 1 8.1749 -3.2852 -5.2907 44 1 2.2790 -2.1552 -2.3868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241699020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:43 Heat of formation + Delta-G solvation = -41.275060 kcal Electronic energy + Delta-G solvation = -26896.667464 eV Core-core repulsion = 23164.354740 eV Total energy + Delta-G solvation = -3732.312724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.35745 -39.25244 -37.90870 -36.88607 -33.83233 -32.89875 -32.21630 -31.28470 -31.01642 -29.62671 -27.87418 -25.46216 -24.98679 -23.76837 -22.92704 -22.59589 -20.93153 -20.29296 -19.94107 -18.16979 -17.39265 -16.76911 -16.21853 -15.82779 -15.75875 -15.30435 -15.09985 -14.86539 -14.26571 -14.16904 -13.73385 -13.64485 -13.51311 -13.17163 -13.02934 -12.73513 -12.52739 -12.39713 -12.01785 -11.75667 -11.53676 -11.47990 -11.29850 -11.22896 -11.17968 -10.81195 -10.57164 -10.54564 -10.34235 -9.88313 -9.76685 -9.62124 -9.33518 -9.31341 -9.01479 -8.08821 -7.52363 -7.21470 -6.87206 -4.49302 1.69249 1.81834 2.71043 2.93572 2.99112 3.02695 3.15372 3.24073 3.70210 3.82784 4.38297 4.51174 4.63195 4.67907 4.80319 4.81815 5.02549 5.09390 5.25921 5.37059 5.46025 5.49010 5.56387 5.58210 5.62804 5.69048 5.72880 5.84123 5.95614 5.99264 6.10517 6.15436 6.29447 6.34567 6.49002 6.67793 6.85488 6.97658 6.98858 7.04075 7.10698 7.25172 7.44478 7.68177 7.78291 7.89532 7.98151 8.12841 8.43776 8.48743 8.71822 8.81231 10.02302 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012553 B = 0.003704 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.982762 B = 7557.935848 C = 9031.613112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.079 3.921 3 Si 0.904 3.096 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.454 4.454 8 H 0.080 0.920 9 C 0.132 3.868 10 C -0.156 4.156 11 C -0.101 4.101 12 C -0.242 4.242 13 C -0.071 4.071 14 C -0.183 4.183 15 C -0.059 4.059 16 C -0.059 4.059 17 C -0.192 4.192 18 C 0.285 3.715 19 O -0.307 6.307 20 C 0.091 3.909 21 C -0.170 4.170 22 C 0.065 3.935 23 O -0.385 6.385 24 C 0.066 3.934 25 C -0.154 4.154 26 N -0.541 5.541 27 C 0.154 3.846 28 H 0.284 0.716 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.097 0.903 40 H 0.054 0.946 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.146 -2.380 -7.621 12.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.483 4.483 8 H 0.098 0.902 9 C 0.129 3.871 10 C -0.175 4.175 11 C -0.119 4.119 12 C -0.261 4.261 13 C -0.089 4.089 14 C -0.186 4.186 15 C -0.062 4.062 16 C -0.084 4.084 17 C -0.212 4.212 18 C 0.107 3.893 19 O -0.215 6.215 20 C 0.034 3.966 21 C -0.208 4.208 22 C -0.012 4.012 23 O -0.303 6.303 24 C -0.011 4.011 25 C -0.192 4.192 26 N -0.264 5.264 27 C -0.002 4.002 28 H 0.095 0.905 29 H 0.136 0.864 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.073 0.927 41 H 0.117 0.883 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.324 -1.843 -8.539 12.777 hybrid contribution -0.066 0.344 1.033 1.091 sum 9.258 -1.499 -7.506 12.012 Atomic orbital electron populations 1.69778 1.07553 1.29663 1.34071 1.25915 0.94710 1.01279 0.92137 0.86411 0.80287 0.80228 0.80273 1.18745 1.20158 1.18739 1.19506 0.97381 0.90799 1.40612 0.90218 1.17515 0.90580 0.90935 0.88027 1.21048 0.98894 0.96979 1.00623 1.20498 0.98534 0.93404 0.99475 1.20283 1.01663 0.96397 1.07740 1.20553 0.95522 0.95513 0.97314 1.18380 0.99829 0.94171 1.06177 1.19646 0.94999 0.95892 0.95627 1.21540 0.91554 0.97705 0.97626 1.20789 1.01366 1.02833 0.96242 1.19730 0.87176 0.92728 0.89632 1.86202 1.38781 1.58876 1.37665 1.22182 0.96546 0.93060 0.84773 1.22624 1.02742 1.00079 0.95381 1.22561 0.83187 0.97552 0.97853 1.87911 1.26117 1.77588 1.38710 1.22549 0.98364 0.93903 0.86270 1.22326 0.96369 1.01363 0.99107 1.67164 1.02883 1.23434 1.32889 1.22804 0.93163 0.95584 0.88648 0.90529 0.86364 0.89408 0.89359 0.89244 0.84936 0.85329 0.89099 0.90705 0.89976 0.92630 0.88508 0.92744 0.88287 0.90132 0.90217 0.81716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.95 10.98 55.55 0.61 -18.34 16 2 C 0.08 1.85 5.17 -17.31 -0.09 1.76 16 3 Si 0.90 17.98 29.59 -169.99 -5.03 12.95 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.45 -11.10 7.12 -37.91 -0.27 -11.37 16 8 H 0.08 1.95 6.65 -52.48 -0.35 1.60 16 9 C 0.13 3.25 5.55 -106.56 -0.59 2.66 16 10 C -0.16 -3.81 8.61 -39.29 -0.34 -4.15 16 11 C -0.10 -2.24 9.96 -39.98 -0.40 -2.64 16 12 C -0.24 -5.13 10.03 -39.39 -0.40 -5.53 16 13 C -0.07 -1.50 9.54 -39.29 -0.37 -1.88 16 14 C -0.18 -4.14 5.54 -104.22 -0.58 -4.72 16 15 C -0.06 -1.22 4.93 -104.74 -0.52 -1.74 16 16 C -0.06 -1.05 9.69 -38.91 -0.38 -1.43 16 17 C -0.19 -3.22 10.02 -39.33 -0.39 -3.61 16 18 C 0.28 5.09 7.46 -16.99 -0.13 4.96 16 19 O -0.31 -4.96 9.76 -18.52 -0.18 -5.14 16 20 C 0.09 1.26 2.46 -26.55 -0.07 1.20 16 21 C -0.17 -2.14 5.77 -26.59 -0.15 -2.30 16 22 C 0.07 0.72 6.84 37.21 0.25 0.97 16 23 O -0.38 -4.53 10.77 -35.23 -0.38 -4.91 16 24 C 0.07 0.66 6.84 37.21 0.25 0.91 16 25 C -0.15 -1.72 5.79 -26.59 -0.15 -1.87 16 26 N -0.54 -10.33 8.61 -12.94 -0.11 -10.44 16 27 C 0.15 3.15 9.19 -17.11 -0.16 2.99 16 28 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 29 H 0.12 2.97 6.25 -52.49 -0.33 2.64 16 30 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 31 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 32 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 33 H 0.13 2.12 8.06 -52.49 -0.42 1.69 16 34 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 35 H 0.09 1.39 6.98 -51.93 -0.36 1.03 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.17 3.53 7.31 -52.48 -0.38 3.15 16 LS Contribution 362.48 15.07 5.46 5.46 Total: -1.00 -26.23 362.48 -10.15 -36.38 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.05 Total: 9.82 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -4.47 Total: -25.78 kcal Atomic # 7 Polarization: -29.28 SS G_CDS: 0.50 Total: -28.78 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.56 Total: -10.06 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -26.23 -10.15 -36.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241699020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.891 kcal (2) G-P(sol) polarization free energy of solvation -26.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds