Wall clock time and date at job start Tue Mar 31 2020 13:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30788 * 1 3 3 Si 1.86802 * 120.00435 * 2 1 4 4 H 1.48497 * 109.46834 * 239.99854 * 3 2 1 5 5 H 1.48507 * 109.46696 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47234 * 119.99536 * 3 2 1 7 7 C 1.40056 * 119.99553 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99352 * 164.46510 * 7 2 1 9 9 C 1.40849 * 120.00091 * 344.47005 * 7 2 1 10 10 C 1.40760 * 120.33555 * 333.05580 * 9 7 2 11 11 C 1.36407 * 119.98841 * 179.97438 * 10 9 7 12 12 C 1.38955 * 120.69754 * 359.97438 * 11 10 9 13 13 C 1.38032 * 120.68202 * 0.02562 * 12 11 10 14 14 C 1.39222 * 119.98254 * 359.97438 * 13 12 11 15 15 C 1.47792 * 120.34251 * 180.02562 * 14 13 12 16 16 C 1.40253 * 120.50523 * 309.70234 * 15 14 13 17 17 C 1.38010 * 118.35532 * 179.76046 * 16 15 14 18 18 C 1.39130 * 119.27071 * 0.53185 * 17 16 15 19 19 O 1.35608 * 119.52206 * 179.72189 * 18 17 16 20 20 C 1.42900 * 117.00145 * 179.97438 * 19 18 17 21 21 C 1.53172 * 109.54598 * 269.82687 * 20 19 18 22 22 C 1.53104 * 109.16053 * 183.24183 * 21 20 19 23 23 O 1.42906 * 109.48442 * 57.47025 * 22 21 20 24 24 C 1.42900 * 114.10025 * 298.89159 * 23 22 21 25 25 C 1.53094 * 109.41388 * 61.16062 * 24 23 22 26 26 N 1.32363 * 120.95983 * 359.70687 * 18 17 16 27 27 C 1.31720 * 121.79765 * 0.02562 * 26 18 17 28 28 H 0.97003 * 119.99552 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.00361 * 359.95673 * 10 9 7 30 30 H 1.08006 * 119.65194 * 180.02562 * 11 10 9 31 31 H 1.08004 * 119.65383 * 179.72358 * 12 11 10 32 32 H 1.08004 * 120.01417 * 179.97438 * 13 12 11 33 33 H 1.07999 * 120.81982 * 0.02562 * 16 15 14 34 34 H 1.08002 * 120.36549 * 180.26453 * 17 16 15 35 35 H 1.09002 * 109.53788 * 30.00559 * 20 19 18 36 36 H 1.09003 * 109.52557 * 303.05925 * 21 20 19 37 37 H 1.08997 * 109.52208 * 63.24529 * 21 20 19 38 38 H 1.09005 * 109.40619 * 297.49688 * 22 21 20 39 39 H 1.08994 * 109.48781 * 177.50050 * 22 21 20 40 40 H 1.08998 * 109.48293 * 301.17476 * 24 23 22 41 41 H 1.09004 * 109.49054 * 181.14770 * 24 23 22 42 42 H 1.09004 * 109.52419 * 182.48490 * 25 24 23 43 43 H 1.08991 * 109.57720 * 62.32587 * 25 24 23 44 44 H 1.08003 * 119.68815 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0958 1.6962 -1.2125 5 1 1.2770 2.7464 -0.0006 6 1 3.0957 1.6964 1.2125 7 6 2.0081 -1.2130 0.0005 8 1 3.0585 -1.2301 -0.2500 9 6 1.3423 -2.4103 0.3277 10 6 0.2132 -2.3892 1.1679 11 6 -0.4265 -3.5530 1.4797 12 6 0.0238 -4.7670 0.9755 13 6 1.1282 -4.8204 0.1492 14 6 1.8025 -3.6499 -0.1874 15 6 2.9855 -3.6978 -1.0720 16 6 4.0344 -4.5914 -0.8105 17 6 5.1155 -4.6023 -1.6682 18 6 5.1352 -3.7264 -2.7490 19 8 6.1975 -3.7289 -3.5919 20 6 6.1614 -2.8079 -4.6839 21 6 5.5012 -3.4744 -5.8947 22 6 5.5399 -2.5094 -7.0827 23 8 6.8940 -2.1428 -7.3551 24 6 7.5457 -1.4724 -6.2744 25 6 7.5896 -2.3966 -5.0547 26 7 4.1319 -2.8909 -2.9667 27 6 3.0786 -2.8504 -2.1769 28 1 -0.4849 0.8401 -0.0004 29 1 -0.1464 -1.4519 1.5658 30 1 -1.2926 -3.5304 2.1245 31 1 -0.4928 -5.6788 1.2369 32 1 1.4691 -5.7700 -0.2363 33 1 3.9950 -5.2575 0.0387 34 1 5.9391 -5.2803 -1.4999 35 1 5.5903 -1.9248 -4.3973 36 1 6.0427 -4.3855 -6.1494 37 1 4.4662 -3.7194 -5.6563 38 1 4.9628 -1.6163 -6.8429 39 1 5.1113 -2.9948 -7.9595 40 1 6.9949 -0.5658 -6.0240 41 1 8.5620 -1.2105 -6.5689 42 1 8.0467 -1.8714 -4.2160 43 1 8.1749 -3.2852 -5.2907 44 1 2.2790 -2.1552 -2.3868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241699020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:42 Heat of formation + Delta-G solvation = -54.168074 kcal Electronic energy + Delta-G solvation = -26897.226547 eV Core-core repulsion = 23164.354740 eV Total energy + Delta-G solvation = -3732.871807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.67711 -40.41083 -39.38907 -38.28638 -35.58848 -34.04100 -33.69121 -32.50830 -32.17296 -31.36185 -29.45520 -27.20683 -26.11276 -24.73434 -24.34699 -23.99503 -22.62152 -21.61050 -21.31602 -19.50501 -19.13594 -17.96487 -17.50527 -17.15113 -16.91536 -16.73895 -16.47608 -15.89818 -15.80194 -15.48849 -15.24685 -14.92017 -14.85204 -14.50879 -14.42992 -14.30507 -13.89134 -13.57128 -13.43571 -13.20504 -13.12842 -12.93808 -12.81991 -12.50791 -12.37111 -12.29300 -12.18148 -11.61256 -11.47067 -11.33172 -11.31960 -11.08304 -10.82558 -10.76997 -10.45944 -9.64905 -9.29968 -8.87651 -8.59683 -6.31406 0.17201 0.36903 1.01418 1.21293 1.34961 1.43626 1.51034 2.00943 2.16737 2.73895 2.86711 2.90721 3.40701 3.67653 3.67803 3.73260 3.91152 4.01412 4.07792 4.19368 4.20443 4.23457 4.30976 4.48517 4.50094 4.55493 4.63925 4.68805 4.70661 4.76132 4.81508 4.92933 4.96348 5.01496 5.10631 5.12481 5.16126 5.30558 5.38635 5.53854 5.61012 5.69338 6.03487 6.09943 6.13843 6.20686 6.33898 6.37533 6.68257 6.91927 6.96739 7.04364 8.29574 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012553 B = 0.003704 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.982762 B = 7557.935848 C = 9031.613112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.044 3.956 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.265 1.265 6 H -0.263 1.263 7 C -0.476 4.476 8 H 0.069 0.931 9 C 0.103 3.897 10 C -0.183 4.183 11 C -0.107 4.107 12 C -0.239 4.239 13 C -0.077 4.077 14 C -0.185 4.185 15 C -0.082 4.082 16 C -0.049 4.049 17 C -0.183 4.183 18 C 0.283 3.717 19 O -0.307 6.307 20 C 0.083 3.917 21 C -0.164 4.164 22 C 0.068 3.932 23 O -0.394 6.394 24 C 0.064 3.936 25 C -0.147 4.147 26 N -0.549 5.549 27 C 0.143 3.857 28 H 0.289 0.711 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.115 0.885 40 H 0.057 0.943 41 H 0.125 0.875 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.942 -3.594 -8.185 14.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.172 4.172 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.505 4.505 8 H 0.087 0.913 9 C 0.100 3.900 10 C -0.203 4.203 11 C -0.125 4.125 12 C -0.258 4.258 13 C -0.095 4.095 14 C -0.187 4.187 15 C -0.085 4.085 16 C -0.075 4.075 17 C -0.203 4.203 18 C 0.105 3.895 19 O -0.215 6.215 20 C 0.026 3.974 21 C -0.203 4.203 22 C -0.009 4.009 23 O -0.313 6.313 24 C -0.012 4.012 25 C -0.185 4.185 26 N -0.272 5.272 27 C -0.012 4.012 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.174 0.826 34 H 0.180 0.820 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.133 0.867 40 H 0.075 0.925 41 H 0.143 0.857 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.114 -3.061 -9.105 14.690 hybrid contribution -0.554 0.576 1.146 1.397 sum 10.560 -2.485 -7.960 13.455 Atomic orbital electron populations 1.69825 1.08610 1.30556 1.35229 1.26547 0.95321 1.03756 0.91556 0.85521 0.79134 0.77000 0.79833 1.18987 1.18930 1.18729 1.19521 0.96990 0.91782 1.42183 0.91273 1.17830 0.91274 0.92075 0.88781 1.21034 1.00029 0.97243 1.01978 1.20774 0.98951 0.93216 0.99591 1.20673 1.01391 0.97041 1.06675 1.20896 0.95305 0.96206 0.97073 1.18672 1.00373 0.93987 1.05643 1.19630 0.95633 0.97460 0.95744 1.21758 0.90737 0.96791 0.98180 1.21133 1.01719 1.02462 0.95026 1.20060 0.87017 0.92345 0.90124 1.86213 1.37887 1.59385 1.38034 1.22433 0.98423 0.92071 0.84438 1.22565 1.01577 1.00568 0.95546 1.22597 0.83248 0.97248 0.97820 1.87905 1.26252 1.77739 1.39427 1.22725 0.99715 0.93407 0.85383 1.22328 0.94342 1.01882 0.99926 1.67120 1.02983 1.24203 1.32873 1.22465 0.93389 0.95792 0.89567 0.90054 0.88112 0.87359 0.86301 0.86465 0.82617 0.81975 0.90968 0.90377 0.91594 0.92742 0.86737 0.92500 0.85690 0.89438 0.89761 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.03 10.98 21.85 0.24 -40.79 16 2 C 0.04 2.16 5.17 85.29 0.44 2.60 16 3 Si 0.96 37.94 29.59 68.60 2.03 39.97 16 4 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.48 -24.32 7.12 23.35 0.17 -24.15 16 8 H 0.07 3.56 6.65 -2.91 -0.02 3.54 16 9 C 0.10 5.24 5.55 -21.12 -0.12 5.12 16 10 C -0.18 -9.24 8.61 22.46 0.19 -9.05 16 11 C -0.11 -4.74 9.96 22.01 0.22 -4.52 16 12 C -0.24 -9.73 10.03 22.39 0.22 -9.50 16 13 C -0.08 -3.15 9.54 22.46 0.21 -2.94 16 14 C -0.18 -8.40 5.54 -19.61 -0.11 -8.51 16 15 C -0.08 -3.38 4.93 -19.94 -0.10 -3.48 16 16 C -0.05 -1.67 9.69 22.71 0.22 -1.45 16 17 C -0.18 -5.71 10.02 22.43 0.22 -5.48 16 18 C 0.28 9.80 7.46 84.83 0.63 10.43 16 19 O -0.31 -9.48 9.76 -89.19 -0.87 -10.35 16 20 C 0.08 2.22 2.46 30.71 0.08 2.29 16 21 C -0.16 -4.00 5.77 30.69 0.18 -3.82 16 22 C 0.07 1.40 6.84 72.02 0.49 1.89 16 23 O -0.39 -8.51 10.77 -148.98 -1.60 -10.11 16 24 C 0.06 1.14 6.84 72.01 0.49 1.63 16 25 C -0.15 -3.00 5.79 30.69 0.18 -2.82 16 26 N -0.55 -21.18 8.61 -307.69 -2.65 -23.83 16 27 C 0.14 6.04 9.19 85.03 0.78 6.82 16 28 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 29 H 0.10 5.32 6.25 -2.91 -0.02 5.30 16 30 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 31 H 0.12 4.08 8.06 -2.91 -0.02 4.05 16 32 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 33 H 0.16 4.49 8.06 -2.91 -0.02 4.47 16 34 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 35 H 0.07 2.22 6.98 -2.39 -0.02 2.20 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.14 6.53 7.31 -2.91 -0.02 6.51 16 Total: -1.00 -57.79 362.48 2.56 -55.24 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 1.00 Total: 34.83 kcal Atomic # 6 Polarization: -49.35 SS G_CDS: 4.41 Total: -44.94 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -2.41 Total: -64.63 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -2.47 Total: -20.46 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -57.79 2.56 -55.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241699020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.067 kcal (2) G-P(sol) polarization free energy of solvation -57.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds