Wall clock time and date at job start Tue Mar 31 2020 14:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86799 * 120.00088 * 2 1 4 4 H 1.48497 * 109.47125 * 270.00054 * 3 2 1 5 5 H 1.48499 * 109.47318 * 30.00276 * 3 2 1 6 6 H 1.48508 * 109.46981 * 149.99925 * 3 2 1 7 7 C 1.38649 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00282 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00132 * 180.02562 * 7 2 1 10 10 C 1.35755 * 117.00401 * 185.07417 * 9 7 2 11 11 C 1.38898 * 120.06801 * 354.71625 * 10 9 7 12 12 C 1.38074 * 119.93114 * 180.27713 * 11 10 9 13 13 C 1.38323 * 120.07147 * 359.76120 * 12 11 10 14 14 C 1.38282 * 120.13555 * 359.96141 * 13 12 11 15 15 C 1.50700 * 119.96741 * 180.02562 * 14 13 12 16 16 N 1.46897 * 109.46899 * 270.02195 * 15 14 13 17 17 C 1.46904 * 110.99825 * 179.97438 * 16 15 14 18 18 H 1.08994 * 110.26957 * 34.30125 * 17 16 15 19 19 C 1.54353 * 110.30374 * 156.37436 * 17 16 15 20 20 C 1.54350 * 102.37563 * 92.59185 * 19 17 16 21 21 C 1.51374 * 105.16893 * 26.33434 * 20 19 17 22 22 C 1.38548 * 130.36045 * 162.83386 * 21 20 19 23 23 C 1.38132 * 120.33515 * 179.97438 * 22 21 20 24 24 C 1.38159 * 119.99774 * 0.02562 * 23 22 21 25 25 C 1.38603 * 119.87083 * 359.97438 * 24 23 22 26 26 O 1.35904 * 119.95154 * 179.97438 * 25 24 23 27 27 C 1.38366 * 109.79605 * 342.83686 * 21 20 19 28 28 C 1.38122 * 120.07058 * 0.03847 * 14 13 12 29 29 H 0.97001 * 119.99831 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.03525 * 359.97438 * 11 10 9 31 31 H 1.08005 * 119.96812 * 179.74379 * 12 11 10 32 32 H 1.07994 * 119.93561 * 179.97438 * 13 12 11 33 33 H 1.08999 * 109.46929 * 30.01856 * 15 14 13 34 34 H 1.08993 * 109.47387 * 150.02097 * 15 14 13 35 35 H 1.00901 * 110.99957 * 303.94857 * 16 15 14 36 36 H 1.08992 * 110.82876 * 210.81297 * 19 17 16 37 37 H 1.09004 * 110.82127 * 334.17682 * 19 17 16 38 38 H 1.08994 * 110.29993 * 145.25937 * 20 19 17 39 39 H 1.09004 * 110.30178 * 267.31291 * 20 19 17 40 40 H 1.07998 * 119.82985 * 359.97438 * 22 21 20 41 41 H 1.07996 * 119.99924 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.06261 * 180.02562 * 24 23 22 43 43 H 0.96702 * 114.00167 * 89.99629 * 26 25 24 44 44 H 1.08000 * 120.03869 * 179.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0014 9 8 3.3571 -1.2009 0.0000 10 6 3.9734 -2.4056 -0.1076 11 6 3.2229 -3.5743 -0.1013 12 6 3.8531 -4.7984 -0.2051 13 6 5.2301 -4.8615 -0.3202 14 6 5.9797 -3.6995 -0.3325 15 6 7.4796 -3.7726 -0.4587 16 7 8.0801 -3.8552 0.8794 17 6 9.5449 -3.9287 0.7955 18 1 9.9049 -3.3379 -0.0467 19 6 10.1823 -3.4310 2.1102 20 6 10.3422 -4.7378 2.9158 21 6 10.4495 -5.8332 1.8765 22 6 10.9115 -7.1345 1.9889 23 6 10.9168 -7.9704 0.8892 24 6 10.4602 -7.5098 -0.3307 25 6 9.9970 -6.2088 -0.4479 26 8 9.5479 -5.7538 -1.6473 27 6 9.9914 -5.3681 0.6565 28 6 5.3551 -2.4719 -0.2291 29 1 -0.4850 0.8401 -0.0004 30 1 2.1478 -3.5259 -0.0104 31 1 3.2704 -5.7078 -0.1961 32 1 5.7209 -5.8201 -0.4008 33 1 7.7531 -4.6565 -1.0349 34 1 7.8454 -2.8803 -0.9666 35 1 7.7890 -3.0791 1.4549 36 1 11.1523 -2.9714 1.9209 37 1 9.5189 -2.7347 2.6232 38 1 11.2479 -4.7006 3.5210 39 1 9.4706 -4.9002 3.5500 40 1 11.2695 -7.4971 2.9411 41 1 11.2777 -8.9839 0.9831 42 1 10.4634 -8.1626 -1.1911 43 1 8.6022 -5.8944 -1.7922 44 1 5.9411 -1.5647 -0.2383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324541321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:07 Heat of formation + Delta-G solvation = -13.508919 kcal Electronic energy + Delta-G solvation = -26466.335741 eV Core-core repulsion = 22735.227047 eV Total energy + Delta-G solvation = -3731.108694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.70643 -39.23589 -37.66013 -37.16838 -36.14907 -33.85785 -32.39802 -30.86833 -29.82101 -29.37171 -28.99950 -26.55227 -25.28420 -24.26367 -22.86570 -21.71835 -21.32538 -20.65210 -20.53215 -18.25214 -17.72098 -17.13866 -16.41543 -16.02357 -15.75512 -15.42351 -15.22098 -15.09626 -14.60183 -14.29002 -14.05695 -13.89355 -13.72053 -13.51624 -13.39407 -12.70945 -12.64745 -12.44519 -12.31529 -12.11030 -12.00143 -11.79133 -11.46740 -11.38107 -11.26517 -11.15601 -10.84324 -10.76376 -10.65752 -10.61459 -10.17387 -9.41343 -8.89527 -8.85315 -8.71924 -8.49179 -8.17360 -7.39282 -6.42809 -4.09960 1.08173 1.13332 1.99541 2.25732 3.20191 3.24014 3.37984 3.39320 4.01174 4.08939 4.21952 4.28215 4.33859 4.58334 4.76380 4.78153 4.79706 4.91439 5.02492 5.09123 5.16089 5.28646 5.32023 5.38765 5.48790 5.56024 5.60738 5.63555 5.71866 5.75759 5.84579 5.89193 5.90945 6.10032 6.19479 6.22175 6.23236 6.41156 6.49650 6.63062 6.75171 6.93608 7.06864 7.21097 7.29186 7.35180 7.49282 7.58350 7.78621 8.02492 8.92522 9.54756 10.64988 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020974 B = 0.002644 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.672183 B =10586.491387 C =11186.888564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.159 3.841 11 C -0.217 4.217 12 C -0.078 4.078 13 C -0.181 4.181 14 C -0.050 4.050 15 C 0.107 3.893 16 N -0.671 5.671 17 C 0.127 3.873 18 H 0.057 0.943 19 C -0.123 4.123 20 C -0.076 4.076 21 C -0.069 4.069 22 C -0.122 4.122 23 C -0.103 4.103 24 C -0.151 4.151 25 C 0.125 3.875 26 O -0.500 6.500 27 C -0.101 4.101 28 C -0.184 4.184 29 H 0.279 0.721 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.348 0.652 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.389 0.611 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.799 -12.228 2.801 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.123 0.877 9 O -0.124 6.124 10 C 0.107 3.893 11 C -0.236 4.236 12 C -0.096 4.096 13 C -0.200 4.200 14 C -0.051 4.051 15 C -0.021 4.021 16 N -0.304 5.304 17 C 0.017 3.983 18 H 0.075 0.925 19 C -0.160 4.160 20 C -0.113 4.113 21 C -0.069 4.069 22 C -0.140 4.140 23 C -0.121 4.121 24 C -0.170 4.170 25 C 0.081 3.919 26 O -0.312 6.312 27 C -0.102 4.102 28 C -0.204 4.204 29 H 0.089 0.911 30 H 0.150 0.850 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.169 0.831 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.139 0.861 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.247 0.753 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 22.169 -12.338 2.789 25.524 hybrid contribution -0.338 1.266 -0.298 1.344 sum 21.832 -11.073 2.491 24.606 Atomic orbital electron populations 1.69647 1.05558 1.28467 1.48160 1.24459 0.95018 0.98794 0.95722 0.86182 0.80295 0.81485 0.78925 1.19916 1.20792 1.18426 1.20758 0.76887 0.96614 1.52258 0.87654 1.83568 1.22601 1.25675 1.80574 1.19039 0.91548 0.85555 0.93151 1.21313 1.01149 0.91974 1.09198 1.20797 0.94278 0.96713 0.97822 1.20444 0.93565 0.96679 1.09341 1.19160 0.93493 0.92634 0.99786 1.20914 0.90842 1.00463 0.89888 1.60492 1.05424 1.50868 1.13638 1.20842 0.88399 0.91552 0.97467 0.92542 1.22501 1.01261 0.97265 0.95016 1.21003 1.02504 0.91508 0.96320 1.20548 0.97118 0.94405 0.94869 1.20621 1.01590 0.92850 0.98967 1.20880 0.99538 0.99542 0.92184 1.21283 1.02563 0.94716 0.98423 1.18036 0.98654 0.91145 0.84116 1.84835 1.29786 1.82984 1.33637 1.20729 0.99951 0.96708 0.92831 1.20020 0.91984 0.97105 1.11329 0.91060 0.85025 0.87217 0.87649 0.90909 0.94361 0.83128 0.90431 0.89856 0.90787 0.89484 0.86123 0.85605 0.85437 0.75275 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.37 13.96 55.48 0.77 -24.59 16 2 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 21.56 28.62 -169.99 -4.86 16.69 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.39 -10.92 9.95 30.88 0.31 -10.61 16 8 H 0.11 3.02 5.44 -52.48 -0.29 2.73 16 9 O -0.22 -5.72 8.59 0.04 0.00 -5.72 16 10 C 0.16 3.61 6.65 -39.11 -0.26 3.35 16 11 C -0.22 -4.63 9.17 -39.40 -0.36 -4.99 16 12 C -0.08 -1.39 10.04 -39.61 -0.40 -1.79 16 13 C -0.18 -2.96 9.70 -39.53 -0.38 -3.35 16 14 C -0.05 -0.82 5.39 -104.65 -0.56 -1.38 16 15 C 0.11 1.39 5.64 -4.98 -0.03 1.36 16 16 N -0.67 -8.14 6.32 -108.13 -0.68 -8.82 16 17 C 0.13 1.38 3.13 -67.83 -0.21 1.16 16 18 H 0.06 0.65 7.84 -51.93 -0.41 0.24 16 19 C -0.12 -1.06 6.74 -25.31 -0.17 -1.23 16 20 C -0.08 -0.66 6.77 -26.84 -0.18 -0.84 16 21 C -0.07 -0.71 6.14 -104.13 -0.64 -1.35 16 22 C -0.12 -1.13 10.04 -39.51 -0.40 -1.53 16 23 C -0.10 -0.92 10.04 -39.65 -0.40 -1.32 16 24 C -0.15 -1.52 9.98 -39.48 -0.39 -1.91 16 25 C 0.13 1.44 6.62 -39.24 -0.26 1.18 16 26 O -0.50 -5.58 12.53 -19.44 -0.24 -5.82 16 27 C -0.10 -1.16 5.68 -104.05 -0.59 -1.75 16 28 C -0.18 -3.54 9.65 -39.39 -0.38 -3.92 16 29 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.13 2.97 5.64 -52.48 -0.30 2.67 16 31 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 32 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.07 0.86 4.66 -51.93 -0.24 0.61 16 34 H 0.04 0.49 8.02 -51.93 -0.42 0.08 16 35 H 0.35 4.19 8.06 -39.29 -0.32 3.87 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.66 7.57 -51.93 -0.39 0.27 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.39 3.33 6.99 45.56 0.32 3.65 16 44 H 0.11 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -30.75 363.44 -9.92 -40.67 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -4.98 Total: 9.36 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -5.41 Total: -27.25 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.09 Total: -33.42 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.24 Total: -11.54 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.86 Total: 16.69 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.75 -9.92 -40.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324541321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.166 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds