Wall clock time and date at job start Tue Mar 31 2020 14:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86799 * 120.00088 * 2 1 4 4 H 1.48497 * 109.47125 * 270.00054 * 3 2 1 5 5 H 1.48499 * 109.47318 * 30.00276 * 3 2 1 6 6 H 1.48508 * 109.46981 * 149.99925 * 3 2 1 7 7 C 1.38649 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00282 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00132 * 180.02562 * 7 2 1 10 10 C 1.35755 * 117.00401 * 185.07417 * 9 7 2 11 11 C 1.38898 * 120.06801 * 354.71625 * 10 9 7 12 12 C 1.38074 * 119.93114 * 180.27713 * 11 10 9 13 13 C 1.38323 * 120.07147 * 359.76120 * 12 11 10 14 14 C 1.38282 * 120.13555 * 359.96141 * 13 12 11 15 15 C 1.50700 * 119.96741 * 180.02562 * 14 13 12 16 16 N 1.46897 * 109.46899 * 270.02195 * 15 14 13 17 17 C 1.46904 * 110.99825 * 179.97438 * 16 15 14 18 18 H 1.08994 * 110.26957 * 34.30125 * 17 16 15 19 19 C 1.54353 * 110.30374 * 156.37436 * 17 16 15 20 20 C 1.54350 * 102.37563 * 92.59185 * 19 17 16 21 21 C 1.51374 * 105.16893 * 26.33434 * 20 19 17 22 22 C 1.38548 * 130.36045 * 162.83386 * 21 20 19 23 23 C 1.38132 * 120.33515 * 179.97438 * 22 21 20 24 24 C 1.38159 * 119.99774 * 0.02562 * 23 22 21 25 25 C 1.38603 * 119.87083 * 359.97438 * 24 23 22 26 26 O 1.35904 * 119.95154 * 179.97438 * 25 24 23 27 27 C 1.38366 * 109.79605 * 342.83686 * 21 20 19 28 28 C 1.38122 * 120.07058 * 0.03847 * 14 13 12 29 29 H 0.97001 * 119.99831 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.03525 * 359.97438 * 11 10 9 31 31 H 1.08005 * 119.96812 * 179.74379 * 12 11 10 32 32 H 1.07994 * 119.93561 * 179.97438 * 13 12 11 33 33 H 1.08999 * 109.46929 * 30.01856 * 15 14 13 34 34 H 1.08993 * 109.47387 * 150.02097 * 15 14 13 35 35 H 1.00901 * 110.99957 * 303.94857 * 16 15 14 36 36 H 1.08992 * 110.82876 * 210.81297 * 19 17 16 37 37 H 1.09004 * 110.82127 * 334.17682 * 19 17 16 38 38 H 1.08994 * 110.29993 * 145.25937 * 20 19 17 39 39 H 1.09004 * 110.30178 * 267.31291 * 20 19 17 40 40 H 1.07998 * 119.82985 * 359.97438 * 22 21 20 41 41 H 1.07996 * 119.99924 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.06261 * 180.02562 * 24 23 22 43 43 H 0.96702 * 114.00167 * 89.99629 * 26 25 24 44 44 H 1.08000 * 120.03869 * 179.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0014 9 8 3.3571 -1.2009 0.0000 10 6 3.9734 -2.4056 -0.1076 11 6 3.2229 -3.5743 -0.1013 12 6 3.8531 -4.7984 -0.2051 13 6 5.2301 -4.8615 -0.3202 14 6 5.9797 -3.6995 -0.3325 15 6 7.4796 -3.7726 -0.4587 16 7 8.0801 -3.8552 0.8794 17 6 9.5449 -3.9287 0.7955 18 1 9.9049 -3.3379 -0.0467 19 6 10.1823 -3.4310 2.1102 20 6 10.3422 -4.7378 2.9158 21 6 10.4495 -5.8332 1.8765 22 6 10.9115 -7.1345 1.9889 23 6 10.9168 -7.9704 0.8892 24 6 10.4602 -7.5098 -0.3307 25 6 9.9970 -6.2088 -0.4479 26 8 9.5479 -5.7538 -1.6473 27 6 9.9914 -5.3681 0.6565 28 6 5.3551 -2.4719 -0.2291 29 1 -0.4850 0.8401 -0.0004 30 1 2.1478 -3.5259 -0.0104 31 1 3.2704 -5.7078 -0.1961 32 1 5.7209 -5.8201 -0.4008 33 1 7.7531 -4.6565 -1.0349 34 1 7.8454 -2.8803 -0.9666 35 1 7.7890 -3.0791 1.4549 36 1 11.1523 -2.9714 1.9209 37 1 9.5189 -2.7347 2.6232 38 1 11.2479 -4.7006 3.5210 39 1 9.4706 -4.9002 3.5500 40 1 11.2695 -7.4971 2.9411 41 1 11.2777 -8.9839 0.9831 42 1 10.4634 -8.1626 -1.1911 43 1 8.6022 -5.8944 -1.7922 44 1 5.9411 -1.5647 -0.2383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324541321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:06 Heat of formation + Delta-G solvation = -32.740457 kcal Electronic energy + Delta-G solvation = -26467.169683 eV Core-core repulsion = 22735.227047 eV Total energy + Delta-G solvation = -3731.942636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.47060 -40.87509 -38.76437 -38.33165 -37.14060 -34.86137 -34.43146 -32.04394 -31.04111 -30.51254 -29.84479 -27.58738 -27.11183 -25.42154 -23.58595 -23.24458 -22.26047 -21.89555 -21.41258 -19.67486 -19.18056 -18.67060 -17.19943 -16.88353 -16.81179 -16.73321 -16.41974 -16.07715 -15.82928 -15.79236 -15.64572 -15.20782 -14.73015 -14.57998 -14.41026 -14.25164 -14.11948 -13.82940 -13.32842 -13.16365 -13.02422 -12.97915 -12.61190 -12.50445 -12.46483 -12.23235 -12.12626 -11.97363 -11.93803 -11.78657 -11.40056 -11.28569 -10.91589 -9.82355 -9.53967 -9.45243 -9.34914 -9.07484 -8.50316 -6.23201 0.33291 0.39433 0.51312 0.69477 1.30675 1.34812 1.50984 2.27322 2.64572 2.76093 3.03079 3.05279 3.29428 3.39999 3.57826 3.63193 3.92824 4.06752 4.08280 4.14300 4.23687 4.29782 4.36223 4.42123 4.55412 4.58053 4.63018 4.66019 4.69590 4.80219 4.87777 4.94283 4.96969 5.10864 5.16686 5.23122 5.25174 5.39118 5.48723 5.53865 5.66143 5.68903 5.74659 5.76206 5.90733 5.95831 5.99746 6.24471 6.38737 6.77841 6.84148 7.58614 8.61443 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020974 B = 0.002644 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.672183 B =10586.491387 C =11186.888564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.399 4.399 8 H 0.080 0.920 9 O -0.246 6.246 10 C 0.121 3.879 11 C -0.237 4.237 12 C -0.076 4.076 13 C -0.160 4.160 14 C -0.038 4.038 15 C 0.113 3.887 16 N -0.674 5.674 17 C 0.128 3.872 18 H 0.048 0.952 19 C -0.120 4.120 20 C -0.074 4.074 21 C -0.080 4.080 22 C -0.128 4.128 23 C -0.102 4.102 24 C -0.162 4.162 25 C 0.106 3.894 26 O -0.510 6.510 27 C -0.123 4.123 28 C -0.183 4.183 29 H 0.284 0.716 30 H 0.107 0.893 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.090 0.910 34 H 0.041 0.959 35 H 0.348 0.652 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.142 0.858 41 H 0.152 0.848 42 H 0.139 0.861 43 H 0.397 0.603 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.079 -13.721 3.230 28.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.098 0.902 9 O -0.153 6.153 10 C 0.072 3.928 11 C -0.256 4.256 12 C -0.094 4.094 13 C -0.179 4.179 14 C -0.039 4.039 15 C -0.016 4.016 16 N -0.306 5.306 17 C 0.019 3.981 18 H 0.066 0.934 19 C -0.158 4.158 20 C -0.111 4.111 21 C -0.081 4.081 22 C -0.146 4.146 23 C -0.120 4.120 24 C -0.180 4.180 25 C 0.061 3.939 26 O -0.324 6.324 27 C -0.125 4.125 28 C -0.202 4.202 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.108 0.892 34 H 0.059 0.941 35 H 0.168 0.832 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.160 0.840 41 H 0.169 0.831 42 H 0.157 0.843 43 H 0.256 0.744 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 25.476 -13.871 3.216 29.185 hybrid contribution -1.138 1.385 -0.453 1.849 sum 24.338 -12.486 2.764 27.493 Atomic orbital electron populations 1.69732 1.06919 1.29579 1.50293 1.25278 0.95874 1.02152 0.95576 0.85213 0.78809 0.77421 0.79233 1.19155 1.19217 1.18655 1.20698 0.78135 0.96084 1.52575 0.90211 1.83509 1.21175 1.27418 1.83232 1.19575 0.93020 0.85093 0.95074 1.21327 1.00189 0.93397 1.10728 1.21117 0.95392 0.96267 0.96661 1.20920 0.92869 0.98251 1.05873 1.19537 0.95485 0.91471 0.97360 1.20891 0.88240 1.01552 0.90880 1.60483 1.06539 1.50826 1.12781 1.20863 0.87330 0.91590 0.98306 0.93423 1.22529 1.01746 0.97552 0.93927 1.21022 1.03232 0.90803 0.96037 1.20852 0.97027 0.95250 0.94922 1.20959 1.01055 0.92532 1.00090 1.21239 0.98492 1.00695 0.91599 1.21524 1.02537 0.94501 0.99443 1.18295 0.99496 0.91890 0.84171 1.84814 1.30585 1.83179 1.33778 1.20884 1.01129 0.96976 0.93491 1.20275 0.90527 0.98890 1.10544 0.90589 0.87545 0.84347 0.84040 0.89196 0.94064 0.83201 0.89352 0.89251 0.88984 0.89804 0.84015 0.83050 0.84270 0.74359 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.48 13.96 21.61 0.30 -55.18 16 2 C 0.01 0.55 5.49 84.83 0.47 1.01 16 3 Si 0.97 45.51 28.62 68.60 1.96 47.47 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.40 -23.59 9.95 67.92 0.68 -22.92 16 8 H 0.08 4.96 5.44 -2.91 -0.02 4.94 16 9 O -0.25 -13.35 8.59 -22.77 -0.20 -13.55 16 10 C 0.12 5.65 6.65 22.58 0.15 5.80 16 11 C -0.24 -10.42 9.17 22.39 0.21 -10.21 16 12 C -0.08 -2.61 10.04 22.25 0.22 -2.39 16 13 C -0.16 -4.74 9.70 22.30 0.22 -4.52 16 14 C -0.04 -1.15 5.39 -19.88 -0.11 -1.25 16 15 C 0.11 2.63 5.64 85.56 0.48 3.11 16 16 N -0.67 -14.72 6.32 -496.00 -3.14 -17.85 16 17 C 0.13 2.51 3.13 44.83 0.14 2.65 16 18 H 0.05 1.01 7.84 -2.39 -0.02 0.99 16 19 C -0.12 -1.79 6.74 31.51 0.21 -1.58 16 20 C -0.07 -1.08 6.77 30.52 0.21 -0.88 16 21 C -0.08 -1.46 6.14 -19.55 -0.12 -1.58 16 22 C -0.13 -2.00 10.04 22.32 0.22 -1.77 16 23 C -0.10 -1.51 10.04 22.23 0.22 -1.29 16 24 C -0.16 -2.84 9.98 22.34 0.22 -2.62 16 25 C 0.11 2.22 6.62 22.49 0.15 2.36 16 26 O -0.51 -10.35 12.53 -92.47 -1.16 -11.51 16 27 C -0.12 -2.57 5.68 -19.49 -0.11 -2.68 16 28 C -0.18 -6.88 9.65 22.39 0.22 -6.67 16 29 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.11 5.17 5.64 -2.91 -0.02 5.15 16 31 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 32 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 33 H 0.09 1.82 4.66 -2.39 -0.01 1.81 16 34 H 0.04 0.97 8.02 -2.39 -0.02 0.95 16 35 H 0.35 7.64 8.06 -89.69 -0.72 6.92 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.22 7.57 -2.38 -0.02 1.20 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 43 H 0.40 5.83 6.99 -74.06 -0.52 5.32 16 44 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -69.39 363.44 1.26 -68.13 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -0.19 Total: 27.91 kcal Atomic # 6 Polarization: -49.10 SS G_CDS: 3.68 Total: -45.42 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -2.83 Total: -73.04 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -1.35 Total: -25.05 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.96 Total: 47.47 kcal Total: -69.39 1.26 -68.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324541321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.386 kcal (2) G-P(sol) polarization free energy of solvation -69.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds