Wall clock time and date at job start Tue Mar 31 2020 14:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86794 * 120.00089 * 2 1 4 4 H 1.48498 * 109.47375 * 240.00208 * 3 2 1 5 5 H 1.48506 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47169 * 119.99897 * 3 2 1 7 7 C 1.38651 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00133 * 180.02562 * 7 2 1 9 9 O 1.34835 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.35753 * 116.99726 * 185.05751 * 9 7 2 11 11 C 1.38954 * 120.02841 * 174.18789 * 10 9 7 12 12 C 1.38136 * 120.07632 * 179.72007 * 11 10 9 13 13 C 1.38193 * 120.14271 * 0.55413 * 12 11 10 14 14 C 1.38961 * 120.05777 * 359.72357 * 13 12 11 15 15 N 1.39677 * 120.03711 * 180.02562 * 14 13 12 16 16 C 1.46507 * 119.99706 * 359.97015 * 15 14 13 17 17 C 1.50700 * 109.46880 * 180.02562 * 16 15 14 18 18 C 1.38283 * 120.01199 * 89.99953 * 17 16 15 19 19 C 1.37966 * 119.96379 * 180.02562 * 18 17 16 20 20 C 1.39148 * 120.20978 * 359.92314 * 19 18 17 21 21 C 1.38365 * 119.69875 * 359.96747 * 20 19 18 22 22 C 1.38112 * 120.00407 * 269.72766 * 17 16 15 23 23 C 1.50776 * 121.40745 * 180.27024 * 21 20 19 24 24 C 1.53072 * 109.67577 * 342.18357 * 23 21 20 25 25 C 1.53411 * 108.29774 * 48.20981 * 24 23 21 26 26 O 1.35846 * 118.49535 * 179.78371 * 20 19 18 27 27 C 1.38721 * 120.03182 * 354.46269 * 10 9 7 28 28 H 0.97001 * 120.00127 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.96385 * 359.97438 * 11 10 9 30 30 H 1.08003 * 119.92247 * 180.25060 * 12 11 10 31 31 H 1.07992 * 119.96526 * 179.74241 * 13 12 11 32 32 H 0.96995 * 119.99952 * 179.97438 * 15 14 13 33 33 H 1.08996 * 109.47168 * 300.00172 * 16 15 14 34 34 H 1.08996 * 109.47143 * 60.00849 * 16 15 14 35 35 H 1.08003 * 120.01796 * 0.10153 * 18 17 16 36 36 H 1.07994 * 119.89528 * 179.97438 * 19 18 17 37 37 H 1.07995 * 119.84289 * 0.03084 * 22 17 16 38 38 H 1.08998 * 109.43512 * 222.11714 * 23 21 20 39 39 H 1.09003 * 109.43830 * 102.24488 * 23 21 20 40 40 H 1.09000 * 109.70004 * 288.50718 * 24 23 21 41 41 H 1.09002 * 109.72828 * 167.93124 * 24 23 21 42 42 H 1.08998 * 109.67998 * 175.56361 * 25 24 23 43 43 H 1.08996 * 109.70745 * 55.02121 * 25 24 23 44 44 H 1.07997 * 120.06923 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3684 -0.0016 10 6 2.0699 -3.5047 0.1046 11 6 1.4353 -4.7343 0.2316 12 6 2.1824 -5.8916 0.3339 13 6 3.5629 -5.8298 0.3218 14 6 4.2036 -4.6026 0.2008 15 7 5.5989 -4.5406 0.1881 16 6 6.3878 -5.7698 0.3030 17 6 7.8555 -5.4302 0.2637 18 6 8.5345 -5.1595 1.4376 19 6 9.8780 -4.8482 1.4005 20 6 10.5538 -4.8070 0.1849 21 6 9.8724 -5.0805 -0.9879 22 6 8.5242 -5.3947 -0.9442 23 6 10.5678 -5.0528 -2.3254 24 6 11.8851 -4.2824 -2.2056 25 6 12.6394 -4.8063 -0.9768 26 8 11.8753 -4.4923 0.1883 27 6 3.4555 -3.4387 0.0921 28 1 -0.4850 0.8400 -0.0004 29 1 0.3565 -4.7856 0.2462 30 1 1.6865 -6.8464 0.4284 31 1 4.1442 -6.7360 0.4061 32 1 6.0456 -3.6838 0.1033 33 1 6.1547 -6.2643 1.2459 34 1 6.1463 -6.4353 -0.5258 35 1 8.0135 -5.1930 2.3831 36 1 10.4071 -4.6366 2.3179 37 1 7.9926 -5.6103 -1.8592 38 1 9.9263 -4.5627 -3.0577 39 1 10.7727 -6.0734 -2.6490 40 1 11.6791 -3.2189 -2.0844 41 1 12.4865 -4.4404 -3.1008 42 1 13.6169 -4.3281 -0.9146 43 1 12.7633 -5.8864 -1.0544 44 1 3.9509 -2.4837 -0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334219028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:12 Heat of formation + Delta-G solvation = -19.008137 kcal Electronic energy + Delta-G solvation = -25792.839563 eV Core-core repulsion = 22061.492405 eV Total energy + Delta-G solvation = -3731.347158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.97019 -39.06596 -38.22219 -36.79863 -34.75070 -34.47238 -32.17821 -31.41453 -30.72481 -29.07269 -28.09239 -26.32710 -25.22812 -25.13129 -23.44100 -22.54603 -21.64682 -20.58285 -19.78329 -18.05115 -17.82763 -17.38838 -16.96959 -16.17099 -15.63962 -15.07958 -14.90049 -14.76123 -14.67941 -14.37722 -14.18220 -14.06980 -13.77422 -13.52346 -13.46311 -13.43549 -13.05945 -12.86696 -12.61216 -12.25409 -11.74850 -11.66982 -11.58815 -11.36514 -11.26643 -11.09307 -10.89313 -10.75994 -10.72008 -10.55399 -10.36404 -9.37230 -9.33430 -9.02401 -8.71564 -8.35191 -7.30171 -6.72689 -6.36975 -3.96137 1.06804 1.11957 2.42938 2.61977 2.96348 3.17088 3.18958 3.20860 3.37505 4.02651 4.09025 4.23165 4.29499 4.37704 4.55487 4.66694 4.74517 4.78163 4.95026 5.03683 5.12653 5.18109 5.19735 5.24253 5.41088 5.43004 5.48721 5.60005 5.63135 5.68075 5.75494 5.84648 5.99374 6.04645 6.16012 6.32274 6.41108 6.44187 6.52642 6.68690 6.70613 7.08876 7.15670 7.19686 7.43484 7.53851 7.71848 8.06936 8.09516 8.26060 9.09200 9.82111 10.81394 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012702 B = 0.002628 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.905972 B =10651.229826 C =12137.291080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.388 4.388 8 H 0.090 0.910 9 O -0.179 6.179 10 C 0.189 3.811 11 C -0.236 4.236 12 C -0.040 4.040 13 C -0.280 4.280 14 C 0.249 3.751 15 N -0.751 5.751 16 C 0.177 3.823 17 C -0.131 4.131 18 C -0.068 4.068 19 C -0.151 4.151 20 C 0.133 3.867 21 C -0.164 4.164 22 C -0.065 4.065 23 C -0.078 4.078 24 C -0.161 4.161 25 C 0.061 3.939 26 O -0.317 6.317 27 C -0.302 4.302 28 H 0.269 0.731 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.395 0.605 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.945 -11.642 -2.147 26.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.107 0.893 9 O -0.082 6.082 10 C 0.134 3.866 11 C -0.257 4.257 12 C -0.059 4.059 13 C -0.303 4.303 14 C 0.148 3.852 15 N -0.383 5.383 16 C 0.053 3.947 17 C -0.131 4.131 18 C -0.086 4.086 19 C -0.169 4.169 20 C 0.088 3.912 21 C -0.165 4.165 22 C -0.083 4.083 23 C -0.115 4.115 24 C -0.198 4.198 25 C -0.014 4.014 26 O -0.231 6.231 27 C -0.325 4.325 28 H 0.079 0.921 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.121 0.879 32 H 0.229 0.771 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.082 0.918 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 23.674 -11.527 -2.008 26.408 hybrid contribution 0.723 1.105 -0.280 1.350 sum 24.398 -10.422 -2.288 26.629 Atomic orbital electron populations 1.70032 1.05894 1.27578 1.46576 1.25255 0.95805 0.98716 0.96762 0.85820 0.78699 0.80028 0.79088 1.19623 1.20332 1.19590 1.21248 0.91700 0.80918 1.52635 0.89268 1.83987 1.34217 1.11451 1.78524 1.19071 0.89504 0.87847 0.90133 1.20041 0.99340 0.90360 1.15952 1.20376 0.93009 0.96494 0.96050 1.20067 0.94441 0.95047 1.20756 1.17469 0.82138 0.93562 0.92004 1.44588 1.02650 1.07615 1.83421 1.19975 0.85419 0.87974 1.01347 1.19827 0.95860 1.04199 0.93235 1.20910 0.93033 0.96367 0.98314 1.20586 0.94746 1.05569 0.96023 1.18713 0.83122 0.96036 0.93292 1.19781 0.95074 1.07334 0.94287 1.20858 0.92689 0.96976 0.97797 1.20469 0.95880 1.01101 0.94062 1.22243 0.97153 1.01399 0.99030 1.22964 0.94252 1.00498 0.83702 1.85998 1.18184 1.78457 1.40494 1.20498 0.93712 0.97186 1.21152 0.92104 0.86949 0.87229 0.87860 0.77080 0.91917 0.92039 0.85077 0.85149 0.85565 0.89845 0.90469 0.90320 0.89693 0.87564 0.91817 0.85869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.90 13.67 55.48 0.76 -25.14 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 21.01 29.55 -169.99 -5.02 15.98 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.39 -11.14 9.49 30.89 0.29 -10.84 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 9 O -0.18 -5.25 9.76 0.03 0.00 -5.25 16 10 C 0.19 4.75 6.64 -39.14 -0.26 4.49 16 11 C -0.24 -5.23 9.99 -39.35 -0.39 -5.62 16 12 C -0.04 -0.75 10.03 -39.64 -0.40 -1.15 16 13 C -0.28 -5.05 9.31 -39.33 -0.37 -5.41 16 14 C 0.25 4.74 6.65 -83.81 -0.56 4.19 16 15 N -0.75 -11.48 5.72 -59.82 -0.34 -11.82 16 16 C 0.18 2.16 5.04 -5.19 -0.03 2.14 16 17 C -0.13 -1.45 5.25 -104.65 -0.55 -2.00 16 18 C -0.07 -0.72 9.70 -39.66 -0.38 -1.10 16 19 C -0.15 -1.60 9.94 -39.34 -0.39 -1.99 16 20 C 0.13 1.46 6.47 -39.20 -0.25 1.21 16 21 C -0.16 -1.66 5.75 -104.44 -0.60 -2.26 16 22 C -0.06 -0.68 9.32 -39.53 -0.37 -1.05 16 23 C -0.08 -0.59 5.86 -27.81 -0.16 -0.75 16 24 C -0.16 -1.01 6.19 -26.48 -0.16 -1.18 16 25 C 0.06 0.41 7.03 37.37 0.26 0.67 16 26 O -0.32 -3.26 10.27 -19.26 -0.20 -3.46 16 27 C -0.30 -6.80 9.01 -39.20 -0.35 -7.15 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.11 2.41 8.06 -52.48 -0.42 1.99 16 30 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 31 H 0.10 1.59 6.72 -52.49 -0.35 1.23 16 32 H 0.40 5.91 8.47 -40.82 -0.35 5.56 16 33 H 0.06 0.75 7.89 -51.93 -0.41 0.34 16 34 H 0.06 0.73 7.89 -51.93 -0.41 0.32 16 35 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.12 2.81 5.63 -52.49 -0.30 2.51 16 LS Contribution 366.71 15.07 5.53 5.53 Total: -1.00 -32.60 366.71 -9.92 -42.52 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.87 Total: 8.50 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -4.77 Total: -26.86 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.42 Total: -36.96 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.20 Total: -8.71 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.60 -9.92 -42.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334219028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.509 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds