Wall clock time and date at job start Tue Mar 31 2020 14:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86794 * 120.00089 * 2 1 4 4 H 1.48498 * 109.47375 * 240.00208 * 3 2 1 5 5 H 1.48506 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47169 * 119.99897 * 3 2 1 7 7 C 1.38651 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00133 * 180.02562 * 7 2 1 9 9 O 1.34835 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.35753 * 116.99726 * 185.05751 * 9 7 2 11 11 C 1.38954 * 120.02841 * 174.18789 * 10 9 7 12 12 C 1.38136 * 120.07632 * 179.72007 * 11 10 9 13 13 C 1.38193 * 120.14271 * 0.55413 * 12 11 10 14 14 C 1.38961 * 120.05777 * 359.72357 * 13 12 11 15 15 N 1.39677 * 120.03711 * 180.02562 * 14 13 12 16 16 C 1.46507 * 119.99706 * 359.97015 * 15 14 13 17 17 C 1.50700 * 109.46880 * 180.02562 * 16 15 14 18 18 C 1.38283 * 120.01199 * 89.99953 * 17 16 15 19 19 C 1.37966 * 119.96379 * 180.02562 * 18 17 16 20 20 C 1.39148 * 120.20978 * 359.92314 * 19 18 17 21 21 C 1.38365 * 119.69875 * 359.96747 * 20 19 18 22 22 C 1.38112 * 120.00407 * 269.72766 * 17 16 15 23 23 C 1.50776 * 121.40745 * 180.27024 * 21 20 19 24 24 C 1.53072 * 109.67577 * 342.18357 * 23 21 20 25 25 C 1.53411 * 108.29774 * 48.20981 * 24 23 21 26 26 O 1.35846 * 118.49535 * 179.78371 * 20 19 18 27 27 C 1.38721 * 120.03182 * 354.46269 * 10 9 7 28 28 H 0.97001 * 120.00127 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.96385 * 359.97438 * 11 10 9 30 30 H 1.08003 * 119.92247 * 180.25060 * 12 11 10 31 31 H 1.07992 * 119.96526 * 179.74241 * 13 12 11 32 32 H 0.96995 * 119.99952 * 179.97438 * 15 14 13 33 33 H 1.08996 * 109.47168 * 300.00172 * 16 15 14 34 34 H 1.08996 * 109.47143 * 60.00849 * 16 15 14 35 35 H 1.08003 * 120.01796 * 0.10153 * 18 17 16 36 36 H 1.07994 * 119.89528 * 179.97438 * 19 18 17 37 37 H 1.07995 * 119.84289 * 0.03084 * 22 17 16 38 38 H 1.08998 * 109.43512 * 222.11714 * 23 21 20 39 39 H 1.09003 * 109.43830 * 102.24488 * 23 21 20 40 40 H 1.09000 * 109.70004 * 288.50718 * 24 23 21 41 41 H 1.09002 * 109.72828 * 167.93124 * 24 23 21 42 42 H 1.08998 * 109.67998 * 175.56361 * 25 24 23 43 43 H 1.08996 * 109.70745 * 55.02121 * 25 24 23 44 44 H 1.07997 * 120.06923 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3346 -2.3684 -0.0016 10 6 2.0699 -3.5047 0.1046 11 6 1.4353 -4.7343 0.2316 12 6 2.1824 -5.8916 0.3339 13 6 3.5629 -5.8298 0.3218 14 6 4.2036 -4.6026 0.2008 15 7 5.5989 -4.5406 0.1881 16 6 6.3878 -5.7698 0.3030 17 6 7.8555 -5.4302 0.2637 18 6 8.5345 -5.1595 1.4376 19 6 9.8780 -4.8482 1.4005 20 6 10.5538 -4.8070 0.1849 21 6 9.8724 -5.0805 -0.9879 22 6 8.5242 -5.3947 -0.9442 23 6 10.5678 -5.0528 -2.3254 24 6 11.8851 -4.2824 -2.2056 25 6 12.6394 -4.8063 -0.9768 26 8 11.8753 -4.4923 0.1883 27 6 3.4555 -3.4387 0.0921 28 1 -0.4850 0.8400 -0.0004 29 1 0.3565 -4.7856 0.2462 30 1 1.6865 -6.8464 0.4284 31 1 4.1442 -6.7360 0.4061 32 1 6.0456 -3.6838 0.1033 33 1 6.1547 -6.2643 1.2459 34 1 6.1463 -6.4353 -0.5258 35 1 8.0135 -5.1930 2.3831 36 1 10.4071 -4.6366 2.3179 37 1 7.9926 -5.6103 -1.8592 38 1 9.9263 -4.5627 -3.0577 39 1 10.7727 -6.0734 -2.6490 40 1 11.6791 -3.2189 -2.0844 41 1 12.4865 -4.4404 -3.1008 42 1 13.6169 -4.3281 -0.9146 43 1 12.7633 -5.8864 -1.0544 44 1 3.9509 -2.4837 -0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334219028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:11 Heat of formation + Delta-G solvation = -38.089732 kcal Electronic energy + Delta-G solvation = -25793.667003 eV Core-core repulsion = 22061.492405 eV Total energy + Delta-G solvation = -3732.174598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.68399 -40.74212 -39.24369 -38.33062 -35.96688 -35.23697 -34.20318 -32.48642 -31.44384 -30.63150 -29.55440 -27.32152 -27.05193 -26.04422 -24.17231 -23.51522 -23.16905 -22.11395 -20.57277 -19.69205 -19.02924 -18.75839 -17.72501 -17.38046 -16.75542 -16.53787 -16.27936 -15.85378 -15.79577 -15.52727 -15.41264 -15.32742 -15.03093 -14.68703 -14.46453 -14.41503 -14.15587 -14.07098 -13.99953 -13.48616 -13.28743 -12.96791 -12.59722 -12.50362 -12.46013 -12.35040 -12.18024 -12.02339 -11.86698 -11.71552 -11.38437 -11.28074 -10.94085 -10.59651 -9.79223 -9.13947 -9.08321 -8.44461 -8.21566 -6.12649 0.26418 0.32259 0.78686 0.94398 1.33783 1.45532 1.50143 2.18956 2.30964 2.46465 2.90540 2.95551 3.28778 3.61140 3.61643 3.68683 3.76927 3.85053 3.95125 4.19127 4.23359 4.27081 4.41059 4.43600 4.44220 4.60639 4.62480 4.63976 4.68880 4.71168 4.77245 4.91424 5.00430 5.06779 5.08140 5.14536 5.15471 5.17293 5.22674 5.40752 5.48525 5.61071 5.76914 5.77517 5.82889 6.05475 6.13471 6.45191 6.61649 6.84910 7.00850 7.84567 8.78995 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012702 B = 0.002628 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.905972 B =10651.229826 C =12137.291080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.017 2.983 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.410 4.410 8 H 0.097 0.903 9 O -0.232 6.232 10 C 0.151 3.849 11 C -0.261 4.261 12 C -0.026 4.026 13 C -0.263 4.263 14 C 0.257 3.743 15 N -0.741 5.741 16 C 0.177 3.823 17 C -0.139 4.139 18 C -0.072 4.072 19 C -0.163 4.163 20 C 0.123 3.877 21 C -0.171 4.171 22 C -0.070 4.070 23 C -0.081 4.081 24 C -0.157 4.157 25 C 0.052 3.948 26 O -0.334 6.334 27 C -0.317 4.317 28 H 0.272 0.728 29 H 0.106 0.894 30 H 0.153 0.847 31 H 0.144 0.856 32 H 0.396 0.604 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.073 0.927 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.171 -13.447 -2.512 30.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.836 3.164 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.487 4.487 8 H 0.115 0.885 9 O -0.139 6.139 10 C 0.100 3.900 11 C -0.282 4.282 12 C -0.044 4.044 13 C -0.286 4.286 14 C 0.153 3.847 15 N -0.371 5.371 16 C 0.054 3.946 17 C -0.140 4.140 18 C -0.090 4.090 19 C -0.181 4.181 20 C 0.077 3.923 21 C -0.171 4.171 22 C -0.089 4.089 23 C -0.118 4.118 24 C -0.194 4.194 25 C -0.022 4.022 26 O -0.249 6.249 27 C -0.341 4.341 28 H 0.081 0.919 29 H 0.124 0.876 30 H 0.171 0.829 31 H 0.162 0.838 32 H 0.230 0.770 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.129 0.871 42 H 0.145 0.855 43 H 0.092 0.908 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 26.974 -13.393 -2.375 30.210 hybrid contribution -0.036 1.338 -0.161 1.348 sum 26.938 -12.055 -2.535 29.621 Atomic orbital electron populations 1.70182 1.07950 1.28740 1.49160 1.26557 0.96846 1.02633 0.96029 0.84683 0.77425 0.74506 0.79800 1.18255 1.19447 1.18356 1.21729 0.92339 0.81581 1.53024 0.88521 1.83947 1.35894 1.12624 1.81406 1.19653 0.90842 0.87754 0.91756 1.20273 0.99614 0.90741 1.17604 1.20842 0.93372 0.96821 0.93382 1.20565 0.94508 0.95886 1.17618 1.17544 0.83745 0.92827 0.90597 1.44758 1.01361 1.09163 1.81829 1.20150 0.85580 0.86540 1.02323 1.19745 0.95250 1.05283 0.93675 1.21038 0.93144 0.96194 0.98654 1.20786 0.95003 1.05768 0.96580 1.18930 0.83700 0.95964 0.93674 1.20085 0.95131 1.06598 0.95325 1.21026 0.93041 0.96840 0.97966 1.20566 0.96326 1.02209 0.92661 1.22241 0.96901 1.00330 0.99976 1.23277 0.94678 1.01478 0.82769 1.85975 1.18003 1.78541 1.42355 1.20501 0.93105 0.98186 1.22294 0.91897 0.87582 0.82930 0.83801 0.76969 0.90791 0.90835 0.84204 0.84396 0.84721 0.89586 0.89043 0.91587 0.87120 0.85478 0.90849 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.07 13.67 21.61 0.30 -57.78 16 2 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 3 Si 1.02 44.23 29.55 68.60 2.03 46.26 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 7 C -0.41 -24.81 9.49 67.92 0.64 -24.17 16 8 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 9 O -0.23 -14.57 9.76 -22.82 -0.22 -14.79 16 10 C 0.15 7.92 6.64 22.56 0.15 8.07 16 11 C -0.26 -11.73 9.99 22.42 0.22 -11.51 16 12 C -0.03 -0.89 10.03 22.23 0.22 -0.66 16 13 C -0.26 -8.50 9.31 22.43 0.21 -8.29 16 14 C 0.26 9.30 6.65 38.20 0.25 9.56 16 15 N -0.74 -20.96 5.72 -343.18 -1.96 -22.93 16 16 C 0.18 3.72 5.04 85.63 0.43 4.15 16 17 C -0.14 -2.76 5.25 -19.88 -0.10 -2.87 16 18 C -0.07 -1.40 9.70 22.22 0.22 -1.18 16 19 C -0.16 -3.26 9.94 22.42 0.22 -3.04 16 20 C 0.12 2.51 6.47 22.52 0.15 2.65 16 21 C -0.17 -3.15 5.75 -19.75 -0.11 -3.26 16 22 C -0.07 -1.33 9.32 22.30 0.21 -1.12 16 23 C -0.08 -1.03 5.86 29.90 0.18 -0.85 16 24 C -0.16 -1.60 6.19 30.76 0.19 -1.41 16 25 C 0.05 0.58 7.03 72.12 0.51 1.08 16 26 O -0.33 -6.38 10.27 -91.82 -0.94 -7.32 16 27 C -0.32 -14.56 9.01 22.52 0.20 -14.35 16 28 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 29 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 30 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 31 H 0.14 3.56 6.72 -2.91 -0.02 3.54 16 32 H 0.40 11.26 8.47 -92.71 -0.79 10.48 16 33 H 0.07 1.45 7.89 -2.39 -0.02 1.43 16 34 H 0.07 1.43 7.89 -2.39 -0.02 1.41 16 35 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 36 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 38 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.11 5.23 5.63 -2.91 -0.02 5.22 16 Total: -1.00 -75.84 366.71 3.68 -72.15 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.24 Total: 32.52 kcal Atomic # 6 Polarization: -52.37 SS G_CDS: 4.25 Total: -48.12 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -1.67 Total: -80.71 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -1.17 Total: -22.11 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -75.84 3.68 -72.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334219028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.065 kcal (2) G-P(sol) polarization free energy of solvation -75.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds