Wall clock time and date at job start Tue Mar 31 2020 13:49:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86800 * 120.00034 * 2 1
4 4 H 1.48501 * 109.47174 * 264.66685 * 3 2 1
5 5 H 1.48498 * 109.46748 * 24.67010 * 3 2 1
6 6 H 1.48498 * 109.46658 * 144.66854 * 3 2 1
7 7 C 1.37878 * 119.99890 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00213 * 4.98305 * 7 2 1
9 9 C 1.50703 * 120.00092 * 184.98420 * 7 2 1
10 10 H 1.09002 * 109.46680 * 25.09395 * 9 7 2
11 11 C 1.50691 * 109.47089 * 145.09568 * 9 7 2
12 12 O 1.21284 * 119.99776 * 120.00167 * 11 9 7
13 13 N 1.34777 * 120.00237 * 300.00071 * 11 9 7
14 14 C 1.46500 * 120.00066 * 180.02562 * 13 11 9
15 15 C 1.52999 * 109.47398 * 179.97438 * 14 13 11
16 16 H 1.08996 * 109.47244 * 305.00195 * 15 14 13
17 17 O 1.42911 * 109.46756 * 65.00262 * 15 14 13
18 18 C 1.50695 * 109.47382 * 184.99577 * 15 14 13
19 19 C 1.38232 * 120.00529 * 279.72852 * 18 15 14
20 20 C 1.38240 * 119.99799 * 179.78562 * 19 18 15
21 21 C 1.38228 * 120.00372 * 0.44559 * 20 19 18
22 22 C 1.38237 * 119.99571 * 359.80949 * 21 20 19
23 23 C 1.38228 * 120.00548 * 359.97438 * 22 21 20
24 24 C 1.50696 * 109.47076 * 265.09896 * 9 7 2
25 25 C 1.38237 * 119.99972 * 305.02138 * 24 9 7
26 26 C 1.38235 * 119.99921 * 179.81077 * 25 24 9
27 27 C 1.38236 * 120.00103 * 0.39634 * 26 25 24
28 28 C 1.38236 * 119.99862 * 359.85500 * 27 26 25
29 29 C 1.38232 * 120.00157 * 125.29374 * 24 9 7
30 30 H 0.97002 * 120.00277 * 359.97438 * 1 2 3
31 31 H 0.96992 * 119.99925 * 0.02562 * 13 11 9
32 32 H 1.09002 * 109.47517 * 300.00145 * 14 13 11
33 33 H 1.09005 * 109.47064 * 59.99952 * 14 13 11
34 34 H 0.96698 * 114.00170 * 60.00105 * 17 15 14
35 35 H 1.08000 * 119.99841 * 359.97438 * 19 18 15
36 36 H 1.08003 * 119.99667 * 180.27886 * 20 19 18
37 37 H 1.08001 * 120.00263 * 179.83095 * 21 20 19
38 38 H 1.08005 * 119.99811 * 179.97438 * 22 21 20
39 39 H 1.07998 * 120.00597 * 179.97438 * 23 22 21
40 40 H 1.08000 * 120.00328 * 359.97438 * 25 24 9
41 41 H 1.08007 * 119.99552 * 180.22502 * 26 25 24
42 42 H 1.07995 * 119.99756 * 179.83432 * 27 26 25
43 43 H 1.07992 * 119.99997 * 179.97438 * 28 27 26
44 44 H 1.08000 * 119.99894 * 359.97438 * 29 24 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.6093 1.9814 -1.3940
5 1 1.3948 2.6825 0.5844
6 1 3.4858 1.4752 0.8097
7 6 2.0045 -1.1941 -0.0005
8 1 1.4676 -2.1276 -0.0822
9 6 3.5072 -1.1966 0.1129
10 1 3.8352 -0.2866 0.6152
11 6 3.9488 -2.3972 0.9094
12 8 4.6845 -3.2206 0.4076
13 7 3.5262 -2.5560 2.1793
14 6 3.9560 -3.7229 2.9538
15 6 3.3395 -3.6617 4.3528
16 1 3.5949 -2.7112 4.8211
17 8 1.9186 -3.7770 4.2526
18 6 3.8775 -4.7943 5.1888
19 6 3.3486 -6.0643 5.0547
20 6 3.8452 -7.1041 5.8185
21 6 4.8644 -6.8719 6.7229
22 6 5.3898 -5.6007 6.8607
23 6 4.8963 -4.5619 6.0939
24 6 4.1148 -1.2566 -1.2649
25 6 3.7601 -2.2721 -2.1331
26 6 4.3145 -2.3250 -3.3983
27 6 5.2298 -1.3670 -3.7924
28 6 5.5885 -0.3544 -2.9223
29 6 5.0312 -0.2994 -1.6585
30 1 -0.4850 0.8400 0.0004
31 1 2.9376 -1.8977 2.5804
32 1 3.6284 -4.6332 2.4515
33 1 5.0429 -3.7243 3.0359
34 1 1.6186 -4.6006 3.8443
35 1 2.5494 -6.2449 4.3510
36 1 3.4350 -8.0973 5.7104
37 1 5.2505 -7.6836 7.3215
38 1 6.1859 -5.4191 7.5677
39 1 5.3065 -3.5687 6.2018
40 1 3.0478 -3.0228 -1.8240
41 1 4.0345 -3.1163 -4.0779
42 1 5.6649 -1.4098 -4.7799
43 1 6.3039 0.3937 -3.2300
44 1 5.3113 0.4917 -0.9787
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001362480098.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:49:31
Heat of formation + Delta-G solvation = -41.693284 kcal
Electronic energy + Delta-G solvation = -26627.547051 eV
Core-core repulsion = 22895.216191 eV
Total energy + Delta-G solvation = -3732.330860 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.146 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-39.93437 -39.21587 -37.95310 -36.93008 -33.73265 -33.59821 -31.77988 -31.47071
-31.05417 -30.11646 -28.53963 -27.18232 -24.06388 -23.16858 -22.75003 -21.83995
-21.19908 -20.93095 -19.26698 -17.76192 -17.12738 -16.67296 -16.09279 -16.00318
-15.97050 -15.15003 -14.87026 -14.66015 -14.47387 -14.23396 -13.93350 -13.61793
-13.53879 -13.41211 -13.01249 -12.84122 -12.67319 -12.52228 -12.23728 -11.97360
-11.90239 -11.77626 -11.35011 -11.12916 -11.10398 -10.97924 -10.45439 -10.27738
-10.14865 -9.89851 -9.51833 -9.12325 -9.02400 -8.92214 -8.66350 -8.43484
-8.11950 -7.79407 -6.27950 -4.31926 1.10880 1.20035 2.16956 2.23383
3.16300 3.24581 3.28896 3.50912 3.59539 3.87841 4.23968 4.41379
4.57182 4.64121 4.70257 4.77320 4.91311 4.95091 5.03385 5.13080
5.30215 5.38890 5.56545 5.61364 5.72194 5.73435 5.77705 5.80153
5.92817 5.97250 6.15532 6.24285 6.30083 6.31179 6.34445 6.39909
6.48330 6.76107 6.77410 6.86945 7.08430 7.18594 7.26833 7.30348
7.57499 7.61091 7.81665 8.21531 8.30978 8.72125 9.11725 9.29963
10.83075
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.014072 B = 0.003313 C = 0.002942
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1989.233477 B = 8448.653682 C = 9514.738559
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.882 5.882
2 C 0.086 3.914
3 Si 0.866 3.134
4 H -0.267 1.267
5 H -0.285 1.285
6 H -0.262 1.262
7 C -0.510 4.510
8 H 0.082 0.918
9 C 0.019 3.981
10 H 0.073 0.927
11 C 0.535 3.465
12 O -0.564 6.564
13 N -0.723 5.723
14 C 0.098 3.902
15 C 0.137 3.863
16 H 0.113 0.887
17 O -0.544 6.544
18 C -0.110 4.110
19 C -0.109 4.109
20 C -0.118 4.118
21 C -0.122 4.122
22 C -0.120 4.120
23 C -0.108 4.108
24 C -0.027 4.027
25 C -0.073 4.073
26 C -0.129 4.129
27 C -0.144 4.144
28 C -0.129 4.129
29 C -0.138 4.138
30 H 0.269 0.731
31 H 0.410 0.590
32 H 0.065 0.935
33 H 0.069 0.931
34 H 0.375 0.625
35 H 0.122 0.878
36 H 0.123 0.877
37 H 0.121 0.879
38 H 0.122 0.878
39 H 0.124 0.876
40 H 0.116 0.884
41 H 0.111 0.889
42 H 0.108 0.892
43 H 0.109 0.891
44 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.712 -8.201 9.819 15.478
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.517 5.517
2 C -0.119 4.119
3 Si 0.693 3.307
4 H -0.192 1.192
5 H -0.211 1.211
6 H -0.187 1.187
7 C -0.547 4.547
8 H 0.100 0.900
9 C -0.003 4.003
10 H 0.091 0.909
11 C 0.324 3.676
12 O -0.443 6.443
13 N -0.376 5.376
14 C -0.027 4.027
15 C 0.077 3.923
16 H 0.131 0.869
17 O -0.350 6.350
18 C -0.111 4.111
19 C -0.127 4.127
20 C -0.136 4.136
21 C -0.140 4.140
22 C -0.138 4.138
23 C -0.126 4.126
24 C -0.028 4.028
25 C -0.091 4.091
26 C -0.148 4.148
27 C -0.162 4.162
28 C -0.147 4.147
29 C -0.156 4.156
30 H 0.079 0.921
31 H 0.246 0.754
32 H 0.083 0.917
33 H 0.087 0.913
34 H 0.224 0.776
35 H 0.140 0.860
36 H 0.141 0.859
37 H 0.139 0.861
38 H 0.140 0.860
39 H 0.142 0.858
40 H 0.134 0.866
41 H 0.129 0.871
42 H 0.127 0.873
43 H 0.127 0.873
44 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 9.059 -8.081 9.744 15.567
hybrid contribution 0.075 0.643 -0.136 0.662
sum 9.135 -7.438 9.607 15.201
Atomic orbital electron populations
1.69860 1.06169 1.27462 1.48233 1.24967 0.94691 0.98715 0.93514
0.87025 0.80149 0.83888 0.79658 1.19208 1.21113 1.18740 1.20512
0.86164 0.95349 1.52660 0.89993 1.18572 0.98373 0.93907 0.89399
0.90949 1.21148 0.77716 0.87936 0.80765 1.90595 1.37588 1.45899
1.70180 1.45779 1.52216 1.25624 1.13978 1.21845 0.99620 0.90632
0.90644 1.21065 0.81288 0.96838 0.93116 0.86917 1.86683 1.19567
1.44708 1.84050 1.20482 0.97313 0.95411 0.97860 1.20939 0.99906
0.92328 0.99509 1.21127 0.97078 0.98978 0.96378 1.21176 0.97059
0.97044 0.98723 1.21145 1.00026 0.93048 0.99554 1.21036 0.96372
0.99513 0.95673 1.20084 0.92297 0.93248 0.97147 1.20838 0.98009
0.97650 0.92593 1.21033 0.98178 0.98963 0.96579 1.20856 0.99892
0.96357 0.99082 1.20880 1.00685 0.98694 0.94414 1.20974 0.98230
0.99761 0.96608 0.92132 0.75426 0.91672 0.91270 0.77622 0.85962
0.85925 0.86127 0.85970 0.85753 0.86556 0.87140 0.87341 0.87280
0.87428
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.00 13.96 55.43 0.77 -24.22 16
2 C 0.09 2.28 5.47 -17.82 -0.10 2.18 16
3 Si 0.87 20.02 27.18 -169.99 -4.62 15.40 16
4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16
6 H -0.26 -5.63 6.06 56.52 0.34 -5.29 16
7 C -0.51 -13.10 8.06 -34.44 -0.28 -13.38 16
8 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16
9 C 0.02 0.43 1.89 -94.08 -0.18 0.25 16
10 H 0.07 1.62 4.89 -51.93 -0.25 1.37 16
11 C 0.54 11.58 7.04 -10.99 -0.08 11.51 16
12 O -0.56 -13.32 15.37 5.55 0.09 -13.23 16
13 N -0.72 -13.04 5.40 -60.29 -0.33 -13.37 16
14 C 0.10 1.44 5.29 -4.04 -0.02 1.42 16
15 C 0.14 1.67 3.24 -27.89 -0.09 1.58 16
16 H 0.11 1.31 8.00 -51.93 -0.42 0.90 16
17 O -0.54 -7.32 13.13 -35.23 -0.46 -7.78 16
18 C -0.11 -1.22 4.97 -104.62 -0.52 -1.74 16
19 C -0.11 -1.12 9.32 -39.58 -0.37 -1.49 16
20 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16
21 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16
22 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16
23 C -0.11 -1.10 9.67 -39.58 -0.38 -1.48 16
24 C -0.03 -0.60 4.09 -104.63 -0.43 -1.03 16
25 C -0.07 -1.60 8.25 -39.58 -0.33 -1.93 16
26 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16
27 C -0.14 -2.55 10.05 -39.58 -0.40 -2.94 16
28 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16
29 C -0.14 -2.83 9.46 -39.58 -0.37 -3.21 16
30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16
31 H 0.41 7.31 8.36 -40.82 -0.34 6.97 16
32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16
33 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16
34 H 0.38 4.04 7.50 45.56 0.34 4.38 16
35 H 0.12 1.08 6.78 -52.49 -0.36 0.72 16
36 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16
37 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16
38 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16
39 H 0.12 1.07 8.04 -52.49 -0.42 0.65 16
40 H 0.12 2.64 7.93 -52.49 -0.42 2.23 16
41 H 0.11 1.80 8.06 -52.48 -0.42 1.37 16
42 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16
43 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16
44 H 0.11 2.05 7.95 -52.49 -0.42 1.63 16
LS Contribution 372.80 15.07 5.62 5.62
Total: -1.00 -31.72 372.80 -9.74 -41.46
By element:
Atomic # 1 Polarization: 21.72 SS G_CDS: -5.28 Total: 16.44 kcal
Atomic # 6 Polarization: -14.79 SS G_CDS: -5.53 Total: -20.32 kcal
Atomic # 7 Polarization: -38.04 SS G_CDS: 0.45 Total: -37.59 kcal
Atomic # 8 Polarization: -20.64 SS G_CDS: -0.38 Total: -21.02 kcal
Atomic # 14 Polarization: 20.02 SS G_CDS: -4.62 Total: 15.40 kcal
Total LS contribution 5.62 Total: 5.62 kcal
Total: -31.72 -9.74 -41.46 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362480098.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.229 kcal
(2) G-P(sol) polarization free energy of solvation -31.724 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.953 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.464 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.693 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds