Wall clock time and date at job start Tue Mar 31 2020 13:49:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86800 * 120.00034 * 2 1
4 4 H 1.48501 * 109.47174 * 264.66685 * 3 2 1
5 5 H 1.48498 * 109.46748 * 24.67010 * 3 2 1
6 6 H 1.48498 * 109.46658 * 144.66854 * 3 2 1
7 7 C 1.37878 * 119.99890 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00213 * 4.98305 * 7 2 1
9 9 C 1.50703 * 120.00092 * 184.98420 * 7 2 1
10 10 H 1.09002 * 109.46680 * 25.09395 * 9 7 2
11 11 C 1.50691 * 109.47089 * 145.09568 * 9 7 2
12 12 O 1.21284 * 119.99776 * 120.00167 * 11 9 7
13 13 N 1.34777 * 120.00237 * 300.00071 * 11 9 7
14 14 C 1.46500 * 120.00066 * 180.02562 * 13 11 9
15 15 C 1.52999 * 109.47398 * 179.97438 * 14 13 11
16 16 H 1.08996 * 109.47244 * 305.00195 * 15 14 13
17 17 O 1.42911 * 109.46756 * 65.00262 * 15 14 13
18 18 C 1.50695 * 109.47382 * 184.99577 * 15 14 13
19 19 C 1.38232 * 120.00529 * 279.72852 * 18 15 14
20 20 C 1.38240 * 119.99799 * 179.78562 * 19 18 15
21 21 C 1.38228 * 120.00372 * 0.44559 * 20 19 18
22 22 C 1.38237 * 119.99571 * 359.80949 * 21 20 19
23 23 C 1.38228 * 120.00548 * 359.97438 * 22 21 20
24 24 C 1.50696 * 109.47076 * 265.09896 * 9 7 2
25 25 C 1.38237 * 119.99972 * 305.02138 * 24 9 7
26 26 C 1.38235 * 119.99921 * 179.81077 * 25 24 9
27 27 C 1.38236 * 120.00103 * 0.39634 * 26 25 24
28 28 C 1.38236 * 119.99862 * 359.85500 * 27 26 25
29 29 C 1.38232 * 120.00157 * 125.29374 * 24 9 7
30 30 H 0.97002 * 120.00277 * 359.97438 * 1 2 3
31 31 H 0.96992 * 119.99925 * 0.02562 * 13 11 9
32 32 H 1.09002 * 109.47517 * 300.00145 * 14 13 11
33 33 H 1.09005 * 109.47064 * 59.99952 * 14 13 11
34 34 H 0.96698 * 114.00170 * 60.00105 * 17 15 14
35 35 H 1.08000 * 119.99841 * 359.97438 * 19 18 15
36 36 H 1.08003 * 119.99667 * 180.27886 * 20 19 18
37 37 H 1.08001 * 120.00263 * 179.83095 * 21 20 19
38 38 H 1.08005 * 119.99811 * 179.97438 * 22 21 20
39 39 H 1.07998 * 120.00597 * 179.97438 * 23 22 21
40 40 H 1.08000 * 120.00328 * 359.97438 * 25 24 9
41 41 H 1.08007 * 119.99552 * 180.22502 * 26 25 24
42 42 H 1.07995 * 119.99756 * 179.83432 * 27 26 25
43 43 H 1.07992 * 119.99997 * 179.97438 * 28 27 26
44 44 H 1.08000 * 119.99894 * 359.97438 * 29 24 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.6093 1.9814 -1.3940
5 1 1.3948 2.6825 0.5844
6 1 3.4858 1.4752 0.8097
7 6 2.0045 -1.1941 -0.0005
8 1 1.4676 -2.1276 -0.0822
9 6 3.5072 -1.1966 0.1129
10 1 3.8352 -0.2866 0.6152
11 6 3.9488 -2.3972 0.9094
12 8 4.6845 -3.2206 0.4076
13 7 3.5262 -2.5560 2.1793
14 6 3.9560 -3.7229 2.9538
15 6 3.3395 -3.6617 4.3528
16 1 3.5949 -2.7112 4.8211
17 8 1.9186 -3.7770 4.2526
18 6 3.8775 -4.7943 5.1888
19 6 3.3486 -6.0643 5.0547
20 6 3.8452 -7.1041 5.8185
21 6 4.8644 -6.8719 6.7229
22 6 5.3898 -5.6007 6.8607
23 6 4.8963 -4.5619 6.0939
24 6 4.1148 -1.2566 -1.2649
25 6 3.7601 -2.2721 -2.1331
26 6 4.3145 -2.3250 -3.3983
27 6 5.2298 -1.3670 -3.7924
28 6 5.5885 -0.3544 -2.9223
29 6 5.0312 -0.2994 -1.6585
30 1 -0.4850 0.8400 0.0004
31 1 2.9376 -1.8977 2.5804
32 1 3.6284 -4.6332 2.4515
33 1 5.0429 -3.7243 3.0359
34 1 1.6186 -4.6006 3.8443
35 1 2.5494 -6.2449 4.3510
36 1 3.4350 -8.0973 5.7104
37 1 5.2505 -7.6836 7.3215
38 1 6.1859 -5.4191 7.5677
39 1 5.3065 -3.5687 6.2018
40 1 3.0478 -3.0228 -1.8240
41 1 4.0345 -3.1163 -4.0779
42 1 5.6649 -1.4098 -4.7799
43 1 6.3039 0.3937 -3.2300
44 1 5.3113 0.4917 -0.9787
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001362480098.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:49:30
Heat of formation + Delta-G solvation = -62.126232 kcal
Electronic energy + Delta-G solvation = -26628.433090 eV
Core-core repulsion = 22895.216191 eV
Total energy + Delta-G solvation = -3733.216899 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.146 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.13819 -40.50146 -39.41317 -38.01430 -35.52774 -35.15274 -33.35230 -32.65130
-31.77396 -31.62990 -29.94997 -28.60540 -25.66198 -24.50912 -23.50732 -23.36613
-22.45770 -22.10490 -20.87593 -19.11299 -18.71011 -18.11885 -17.65164 -17.07261
-17.01564 -16.44506 -16.32633 -15.94764 -15.82162 -15.54556 -15.28846 -14.89670
-14.79238 -14.61444 -14.28323 -14.24094 -14.13135 -13.81649 -13.67870 -13.47768
-13.31795 -12.95818 -12.72436 -12.70296 -12.19764 -12.03329 -11.96627 -11.89699
-11.63752 -11.41117 -11.23183 -10.90094 -10.54021 -9.99262 -9.84193 -9.72042
-9.64585 -9.36949 -8.33605 -6.41464 0.34682 0.47485 0.64097 0.70540
1.32297 1.39783 1.43982 1.84827 2.30419 2.39372 2.83080 2.97539
3.15539 3.42902 3.64199 3.81951 3.89670 4.09316 4.12808 4.17583
4.21847 4.27296 4.29619 4.37149 4.39271 4.53643 4.59336 4.60494
4.71142 4.82010 4.87251 4.90465 5.01841 5.13005 5.19906 5.31893
5.39692 5.52070 5.58580 5.59686 5.60990 5.69629 5.73781 5.94816
6.07186 6.20670 6.30439 6.60268 6.61489 6.68616 7.23353 7.43270
8.80964
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.014072 B = 0.003313 C = 0.002942
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1989.233477 B = 8448.653682 C = 9514.738559
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C 0.037 3.963
3 Si 0.921 3.079
4 H -0.268 1.268
5 H -0.283 1.283
6 H -0.234 1.234
7 C -0.499 4.499
8 H 0.037 0.963
9 C 0.022 3.978
10 H 0.080 0.920
11 C 0.531 3.469
12 O -0.587 6.587
13 N -0.714 5.714
14 C 0.100 3.900
15 C 0.149 3.851
16 H 0.120 0.880
17 O -0.562 6.562
18 C -0.126 4.126
19 C -0.124 4.124
20 C -0.126 4.126
21 C -0.124 4.124
22 C -0.125 4.125
23 C -0.119 4.119
24 C -0.056 4.056
25 C -0.104 4.104
26 C -0.134 4.134
27 C -0.137 4.137
28 C -0.125 4.125
29 C -0.154 4.154
30 H 0.270 0.730
31 H 0.411 0.589
32 H 0.056 0.944
33 H 0.072 0.928
34 H 0.384 0.616
35 H 0.128 0.872
36 H 0.142 0.858
37 H 0.146 0.854
38 H 0.145 0.855
39 H 0.136 0.864
40 H 0.088 0.912
41 H 0.134 0.866
42 H 0.151 0.849
43 H 0.149 0.851
44 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.393 -7.594 9.957 16.930
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.163 4.163
3 Si 0.745 3.255
4 H -0.193 1.193
5 H -0.209 1.209
6 H -0.158 1.158
7 C -0.537 4.537
8 H 0.056 0.944
9 C 0.000 4.000
10 H 0.097 0.903
11 C 0.320 3.680
12 O -0.468 6.468
13 N -0.365 5.365
14 C -0.024 4.024
15 C 0.090 3.910
16 H 0.137 0.863
17 O -0.369 6.369
18 C -0.127 4.127
19 C -0.142 4.142
20 C -0.144 4.144
21 C -0.142 4.142
22 C -0.143 4.143
23 C -0.137 4.137
24 C -0.057 4.057
25 C -0.122 4.122
26 C -0.151 4.151
27 C -0.155 4.155
28 C -0.142 4.142
29 C -0.172 4.172
30 H 0.079 0.921
31 H 0.247 0.753
32 H 0.075 0.925
33 H 0.090 0.910
34 H 0.234 0.766
35 H 0.146 0.854
36 H 0.159 0.841
37 H 0.163 0.837
38 H 0.163 0.837
39 H 0.154 0.846
40 H 0.107 0.893
41 H 0.152 0.848
42 H 0.168 0.832
43 H 0.166 0.834
44 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 11.749 -7.497 9.914 17.104
hybrid contribution -0.738 0.298 -0.210 0.823
sum 11.011 -7.199 9.704 16.347
Atomic orbital electron populations
1.69992 1.07960 1.28381 1.50407 1.25687 0.95273 1.02130 0.93222
0.86123 0.80008 0.79444 0.79916 1.19323 1.20869 1.15754 1.20428
0.87897 0.93579 1.51757 0.94438 1.18497 0.96170 0.94694 0.90607
0.90281 1.21013 0.77795 0.87527 0.81700 1.90565 1.38911 1.46454
1.70918 1.45757 1.51192 1.26399 1.13169 1.21992 0.99884 0.88789
0.91703 1.20948 0.80526 0.97993 0.91564 0.86273 1.86647 1.20408
1.45641 1.84198 1.20391 0.98459 0.95178 0.98699 1.21154 1.00379
0.92546 1.00135 1.21430 0.97243 0.99565 0.96167 1.21556 0.96454
0.97768 0.98382 1.21477 1.00400 0.92859 0.99566 1.21279 0.96178
1.00629 0.95645 1.20106 0.94196 0.94703 0.96708 1.20823 0.99061
0.97826 0.94529 1.21361 0.98019 1.00142 0.95624 1.21350 0.98448
0.94961 1.00701 1.21369 1.00324 0.99306 0.93242 1.21249 0.98142
0.99563 0.98218 0.92086 0.75315 0.92524 0.91003 0.76586 0.85430
0.84062 0.83658 0.83677 0.84623 0.89341 0.84773 0.83180 0.83353
0.86070
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.70 13.96 21.45 0.30 -54.40 16
2 C 0.04 2.03 5.47 84.66 0.46 2.49 16
3 Si 0.92 41.06 27.18 68.60 1.86 42.93 16
4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16
5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16
6 H -0.23 -9.26 6.06 99.48 0.60 -8.65 16
7 C -0.50 -26.83 8.06 25.60 0.21 -26.62 16
8 H 0.04 2.29 8.06 -2.91 -0.02 2.27 16
9 C 0.02 1.01 1.89 -13.04 -0.02 0.98 16
10 H 0.08 3.50 4.89 -2.39 -0.01 3.49 16
11 C 0.53 23.71 7.04 87.65 0.62 24.32 16
12 O -0.59 -28.60 15.37 -3.04 -0.05 -28.64 16
13 N -0.71 -26.55 5.40 -463.06 -2.50 -29.05 16
14 C 0.10 3.03 5.29 86.38 0.46 3.49 16
15 C 0.15 3.68 3.24 29.85 0.10 3.78 16
16 H 0.12 2.75 8.00 -2.39 -0.02 2.73 16
17 O -0.56 -15.51 13.13 -148.98 -1.96 -17.47 16
18 C -0.13 -2.77 4.97 -19.87 -0.10 -2.87 16
19 C -0.12 -2.52 9.32 22.27 0.21 -2.31 16
20 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16
21 C -0.12 -1.93 10.05 22.27 0.22 -1.70 16
22 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16
23 C -0.12 -2.29 9.67 22.27 0.22 -2.08 16
24 C -0.06 -2.54 4.09 -19.87 -0.08 -2.63 16
25 C -0.10 -4.69 8.25 22.27 0.18 -4.51 16
26 C -0.13 -4.93 10.05 22.27 0.22 -4.70 16
27 C -0.14 -4.35 10.05 22.27 0.22 -4.13 16
28 C -0.12 -4.09 10.05 22.27 0.22 -3.87 16
29 C -0.15 -6.02 9.46 22.27 0.21 -5.81 16
30 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16
31 H 0.41 15.08 8.36 -92.71 -0.77 14.30 16
32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16
33 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16
34 H 0.38 8.70 7.50 -74.06 -0.56 8.14 16
35 H 0.13 2.30 6.78 -2.91 -0.02 2.28 16
36 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16
37 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16
38 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16
39 H 0.14 2.17 8.04 -2.91 -0.02 2.15 16
40 H 0.09 4.33 7.93 -2.91 -0.02 4.31 16
41 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16
42 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16
43 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16
44 H 0.12 4.29 7.95 -2.91 -0.02 4.27 16
Total: -1.00 -71.10 372.80 1.05 -70.06
By element:
Atomic # 1 Polarization: 46.90 SS G_CDS: -0.41 Total: 46.50 kcal
Atomic # 6 Polarization: -33.71 SS G_CDS: 3.79 Total: -29.92 kcal
Atomic # 7 Polarization: -81.24 SS G_CDS: -2.20 Total: -83.45 kcal
Atomic # 8 Polarization: -44.11 SS G_CDS: -2.00 Total: -46.12 kcal
Atomic # 14 Polarization: 41.06 SS G_CDS: 1.86 Total: 42.93 kcal
Total: -71.10 1.05 -70.06 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362480098.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.931 kcal
(2) G-P(sol) polarization free energy of solvation -71.104 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.173 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.057 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.126 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds