Wall clock time and date at job start Tue Mar 31 2020 13:49:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30628 * 1
3 3 Si 1.86802 * 119.99885 * 2 1
4 4 H 1.48497 * 109.46888 * 90.00294 * 3 2 1
5 5 H 1.48499 * 109.46819 * 210.00008 * 3 2 1
6 6 H 1.48498 * 109.47235 * 329.99936 * 3 2 1
7 7 C 1.40270 * 119.99792 * 180.02562 * 2 1 3
8 8 H 1.08007 * 119.99967 * 160.94593 * 7 2 1
9 9 C 1.40893 * 120.00340 * 340.93931 * 7 2 1
10 10 C 1.40710 * 120.32484 * 325.85599 * 9 7 2
11 11 C 1.37601 * 119.87923 * 179.97438 * 10 9 7
12 12 C 1.38828 * 120.56733 * 0.02562 * 11 10 9
13 13 C 1.38215 * 120.67982 * 359.97438 * 12 11 10
14 14 C 1.39232 * 120.09251 * 359.72196 * 13 12 11
15 15 C 1.47428 * 120.28208 * 180.27997 * 14 13 12
16 16 O 1.21618 * 119.99913 * 177.04861 * 15 14 13
17 17 N 1.34774 * 120.00477 * 357.04743 * 15 14 13
18 18 C 1.46497 * 120.00234 * 180.02562 * 17 15 14
19 19 C 1.53000 * 109.47087 * 179.97438 * 18 17 15
20 20 C 1.50695 * 109.47392 * 179.97438 * 19 18 17
21 21 C 1.38230 * 120.00292 * 269.73366 * 20 19 18
22 22 C 1.38241 * 120.00227 * 179.76702 * 21 20 19
23 23 C 1.38237 * 119.99744 * 0.49801 * 22 21 20
24 24 C 1.50699 * 119.99921 * 179.72662 * 23 22 21
25 25 O 1.42897 * 109.47381 * 270.02524 * 24 23 22
26 26 C 1.38233 * 120.00092 * 359.75091 * 23 22 21
27 27 C 1.38237 * 119.99814 * 89.99869 * 20 19 18
28 28 H 0.96993 * 120.00143 * 174.75649 * 1 2 3
29 29 H 1.07999 * 120.06103 * 359.97438 * 10 9 7
30 30 H 1.07994 * 119.71198 * 179.97438 * 11 10 9
31 31 H 1.07997 * 119.65686 * 179.97438 * 12 11 10
32 32 H 1.08001 * 119.95802 * 179.97438 * 13 12 11
33 33 H 0.97004 * 119.99726 * 359.97438 * 17 15 14
34 34 H 1.08997 * 109.47246 * 299.99875 * 18 17 15
35 35 H 1.09003 * 109.47046 * 60.00341 * 18 17 15
36 36 H 1.09000 * 109.47609 * 300.00348 * 19 18 17
37 37 H 1.09002 * 109.47398 * 60.00025 * 19 18 17
38 38 H 1.07996 * 120.00054 * 359.97438 * 21 20 19
39 39 H 1.07999 * 120.00147 * 180.23086 * 22 21 20
40 40 H 1.08997 * 109.47201 * 30.02570 * 24 23 22
41 41 H 1.08998 * 109.46814 * 150.02297 * 24 23 22
42 42 H 0.96696 * 113.99831 * 180.02562 * 25 24 23
43 43 H 1.07997 * 120.00232 * 179.97438 * 26 23 22
44 44 H 1.08003 * 120.00414 * 0.02562 * 27 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3063 0.0000 0.0000
3 14 2.2403 1.6178 0.0000
4 1 2.4878 2.0464 1.4001
5 1 3.5378 1.4402 -0.7000
6 1 1.4377 2.6527 -0.7000
7 6 2.0076 -1.2148 -0.0005
8 1 3.0433 -1.2403 -0.3059
9 6 1.3611 -2.4017 0.3974
10 6 0.3812 -2.3729 1.4068
11 6 -0.2448 -3.5375 1.7879
12 6 0.0820 -4.7446 1.1851
13 6 1.0409 -4.7997 0.1912
14 6 1.6873 -3.6373 -0.2204
15 6 2.7064 -3.6904 -1.2844
16 8 3.2291 -2.6650 -1.6775
17 7 3.0589 -4.8751 -1.8216
18 6 4.0719 -4.9278 -2.8785
19 6 4.2847 -6.3805 -3.3090
20 6 5.3263 -6.4348 -4.3966
21 6 4.9464 -6.3457 -5.7227
22 6 5.9024 -6.3906 -6.7202
23 6 7.2374 -6.5350 -6.3920
24 6 8.2790 -6.5901 -7.4797
25 8 8.4771 -7.9472 -7.8812
26 6 7.6170 -6.6292 -5.0662
27 6 6.6614 -6.5791 -4.0684
28 1 -0.4850 -0.8365 -0.0768
29 1 0.1209 -1.4384 1.8816
30 1 -0.9962 -3.5123 2.5632
31 1 -0.4183 -5.6498 1.4959
32 1 1.2864 -5.7452 -0.2695
33 1 2.6422 -5.6930 -1.5079
34 1 3.7362 -4.3407 -3.7333
35 1 5.0102 -4.5194 -2.5031
36 1 4.6206 -6.9674 -2.4541
37 1 3.3465 -6.7894 -3.6843
38 1 3.9029 -6.2376 -5.9793
39 1 5.6058 -6.3172 -7.7561
40 1 7.9429 -6.0036 -8.3347
41 1 9.2175 -6.1814 -7.1051
42 1 9.1362 -8.0583 -8.5800
43 1 8.6599 -6.7425 -4.8097
44 1 6.9579 -6.6535 -3.0326
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001417692154.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:49:51
Heat of formation + Delta-G solvation = -56.738995 kcal
Electronic energy + Delta-G solvation = -25602.122419 eV
Core-core repulsion = 21869.139128 eV
Total energy + Delta-G solvation = -3732.983291 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.146 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-39.81872 -38.97599 -37.24519 -36.90014 -34.96461 -33.95396 -32.66056 -31.11376
-30.31756 -29.49543 -28.85443 -25.91859 -25.04339 -23.12510 -22.92914 -21.94893
-20.92394 -20.74611 -19.46330 -18.07352 -17.81579 -16.62200 -16.26244 -16.10047
-15.58101 -15.00968 -14.84077 -14.74052 -14.14845 -14.07316 -14.00748 -13.80405
-13.62803 -13.52774 -13.01597 -12.97797 -12.56518 -12.28960 -12.18621 -11.86612
-11.66833 -11.44093 -11.16595 -11.12261 -11.02162 -10.86689 -10.74624 -10.45491
-10.36903 -10.15949 -9.61505 -9.08272 -9.07597 -8.83741 -8.49708 -8.39598
-7.79160 -7.60766 -7.14031 -4.46090 1.05026 1.25062 2.24123 2.73262
3.20262 3.31282 3.42295 3.42581 3.89666 4.04508 4.07705 4.15489
4.53871 4.64440 4.66603 4.81566 4.83801 4.87680 5.04119 5.13840
5.18056 5.30948 5.45690 5.49655 5.52676 5.83073 5.85212 5.85671
5.95111 6.03223 6.12129 6.20533 6.23883 6.37035 6.48621 6.51526
6.71546 6.80604 6.98826 7.10250 7.21442 7.27949 7.49163 7.61040
7.72081 7.89100 8.09489 8.21756 8.37345 8.73459 8.86594 9.36401
10.04627
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.016053 B = 0.002407 C = 0.002160
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1743.781303 B =11628.803252 C =12957.903633
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.794 5.794
2 C 0.030 3.970
3 Si 1.073 2.927
4 H -0.275 1.275
5 H -0.273 1.273
6 H -0.276 1.276
7 C -0.466 4.466
8 H 0.106 0.894
9 C 0.120 3.880
10 C -0.201 4.201
11 C -0.076 4.076
12 C -0.260 4.260
13 C -0.043 4.043
14 C -0.266 4.266
15 C 0.563 3.437
16 O -0.537 6.537
17 N -0.751 5.751
18 C 0.133 3.867
19 C -0.094 4.094
20 C -0.067 4.067
21 C -0.116 4.116
22 C -0.097 4.097
23 C -0.102 4.102
24 C 0.118 3.882
25 O -0.568 6.568
26 C -0.098 4.098
27 C -0.116 4.116
28 H 0.298 0.702
29 H 0.107 0.893
30 H 0.093 0.907
31 H 0.093 0.907
32 H 0.091 0.909
33 H 0.391 0.609
34 H 0.061 0.939
35 H 0.061 0.939
36 H 0.079 0.921
37 H 0.078 0.922
38 H 0.125 0.875
39 H 0.122 0.878
40 H 0.054 0.946
41 H 0.054 0.946
42 H 0.379 0.621
43 H 0.122 0.878
44 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.855 -12.283 -11.075 20.349
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.418 5.418
2 C -0.191 4.191
3 Si 0.896 3.104
4 H -0.201 1.201
5 H -0.197 1.197
6 H -0.201 1.201
7 C -0.493 4.493
8 H 0.124 0.876
9 C 0.115 3.885
10 C -0.220 4.220
11 C -0.095 4.095
12 C -0.279 4.279
13 C -0.062 4.062
14 C -0.270 4.270
15 C 0.357 3.643
16 O -0.415 6.415
17 N -0.406 5.406
18 C 0.008 3.992
19 C -0.131 4.131
20 C -0.068 4.068
21 C -0.134 4.134
22 C -0.116 4.116
23 C -0.102 4.102
24 C 0.040 3.960
25 O -0.374 6.374
26 C -0.116 4.116
27 C -0.135 4.135
28 H 0.112 0.888
29 H 0.125 0.875
30 H 0.111 0.889
31 H 0.111 0.889
32 H 0.109 0.891
33 H 0.225 0.775
34 H 0.080 0.920
35 H 0.079 0.921
36 H 0.097 0.903
37 H 0.097 0.903
38 H 0.143 0.857
39 H 0.140 0.860
40 H 0.072 0.928
41 H 0.072 0.928
42 H 0.226 0.774
43 H 0.140 0.860
44 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges 11.535 -9.959 -10.869 18.718
hybrid contribution 0.242 -2.158 -0.316 2.194
sum 11.777 -12.117 -11.184 20.263
Atomic orbital electron populations
1.70358 1.08249 1.34344 1.28805 1.27274 0.95705 1.04712 0.91420
0.83522 0.75743 0.73121 0.78004 1.20051 1.19737 1.20148 1.21219
1.01651 0.91869 1.34536 0.87641 1.17517 0.89743 0.92089 0.89106
1.21256 1.02931 0.97118 1.00681 1.20745 0.97641 0.93204 0.97882
1.20242 1.05814 0.96716 1.05148 1.20716 0.94839 0.95346 0.95340
1.19397 1.07824 0.95359 1.04467 1.18375 0.82110 0.82090 0.81733
1.90684 1.55143 1.33010 1.62675 1.46019 1.43807 1.09776 1.40968
1.21062 0.92473 0.94546 0.91092 1.20835 0.97871 0.97444 0.96993
1.19785 0.94279 0.98431 0.94268 1.21082 0.99744 1.00422 0.92188
1.21009 0.92199 0.99003 0.99346 1.19577 0.94113 1.02603 0.93928
1.20977 0.96428 0.83444 0.95105 1.86578 1.64569 1.26406 1.59866
1.21005 0.99533 0.98924 0.92112 1.21080 0.92369 1.00485 0.99517
0.88779 0.87525 0.88879 0.88896 0.89100 0.77457 0.92045 0.92061
0.90281 0.90292 0.85676 0.86033 0.92756 0.92761 0.77428 0.86040
0.85681
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -21.39 12.57 55.56 0.70 -20.69 16
2 C 0.03 0.80 5.04 -17.30 -0.09 0.71 16
3 Si 1.07 22.76 29.98 -169.99 -5.10 17.66 16
4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16
5 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16
6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16
7 C -0.47 -12.90 7.66 -37.81 -0.29 -13.19 16
8 H 0.11 3.06 5.91 -52.48 -0.31 2.75 16
9 C 0.12 3.21 5.18 -106.54 -0.55 2.66 16
10 C -0.20 -5.02 7.86 -38.88 -0.31 -5.32 16
11 C -0.08 -1.68 10.01 -39.60 -0.40 -2.07 16
12 C -0.26 -5.43 10.03 -39.37 -0.39 -5.82 16
13 C -0.04 -0.91 9.53 -39.22 -0.37 -1.29 16
14 C -0.27 -6.48 5.92 -104.37 -0.62 -7.09 16
15 C 0.56 13.13 7.73 -12.52 -0.10 13.03 16
16 O -0.54 -14.40 13.55 5.26 0.07 -14.33 16
17 N -0.75 -13.21 5.51 -61.38 -0.34 -13.55 16
18 C 0.13 2.01 5.66 -4.04 -0.02 1.99 16
19 C -0.09 -1.05 5.46 -27.89 -0.15 -1.20 16
20 C -0.07 -0.76 5.13 -104.63 -0.54 -1.30 16
21 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16
22 C -0.10 -1.02 9.70 -39.58 -0.38 -1.40 16
23 C -0.10 -1.06 5.51 -104.62 -0.58 -1.64 16
24 C 0.12 0.92 7.17 36.01 0.26 1.18 16
25 O -0.57 -4.74 13.64 -35.23 -0.48 -5.22 16
26 C -0.10 -1.02 9.70 -39.58 -0.38 -1.40 16
27 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16
28 H 0.30 8.22 6.54 -40.82 -0.27 7.95 16
29 H 0.11 2.72 6.93 -52.49 -0.36 2.35 16
30 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16
31 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16
32 H 0.09 1.56 6.41 -52.49 -0.34 1.22 16
33 H 0.39 5.83 6.51 -40.82 -0.27 5.56 16
34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
36 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16
37 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16
38 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16
39 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16
40 H 0.05 0.35 8.09 -51.93 -0.42 -0.07 16
41 H 0.05 0.34 8.09 -51.93 -0.42 -0.08 16
42 H 0.38 1.22 9.12 45.56 0.42 1.64 16
43 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16
44 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16
LS Contribution 371.65 15.07 5.60 5.60
Total: -1.00 -32.86 371.65 -10.21 -43.07
By element:
Atomic # 1 Polarization: 17.91 SS G_CDS: -4.99 Total: 12.92 kcal
Atomic # 6 Polarization: -19.79 SS G_CDS: -5.68 Total: -25.47 kcal
Atomic # 7 Polarization: -34.60 SS G_CDS: 0.36 Total: -34.24 kcal
Atomic # 8 Polarization: -19.13 SS G_CDS: -0.41 Total: -19.54 kcal
Atomic # 14 Polarization: 22.76 SS G_CDS: -5.10 Total: 17.66 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -32.86 -10.21 -43.07 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001417692154.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.664 kcal
(2) G-P(sol) polarization free energy of solvation -32.865 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.529 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.739 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds