Wall clock time and date at job start Tue Mar 31 2020 13:49:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30628 * 1
3 3 Si 1.86802 * 119.99885 * 2 1
4 4 H 1.48497 * 109.46888 * 90.00294 * 3 2 1
5 5 H 1.48499 * 109.46819 * 210.00008 * 3 2 1
6 6 H 1.48498 * 109.47235 * 329.99936 * 3 2 1
7 7 C 1.40270 * 119.99792 * 180.02562 * 2 1 3
8 8 H 1.08007 * 119.99967 * 160.94593 * 7 2 1
9 9 C 1.40893 * 120.00340 * 340.93931 * 7 2 1
10 10 C 1.40710 * 120.32484 * 325.85599 * 9 7 2
11 11 C 1.37601 * 119.87923 * 179.97438 * 10 9 7
12 12 C 1.38828 * 120.56733 * 0.02562 * 11 10 9
13 13 C 1.38215 * 120.67982 * 359.97438 * 12 11 10
14 14 C 1.39232 * 120.09251 * 359.72196 * 13 12 11
15 15 C 1.47428 * 120.28208 * 180.27997 * 14 13 12
16 16 O 1.21618 * 119.99913 * 177.04861 * 15 14 13
17 17 N 1.34774 * 120.00477 * 357.04743 * 15 14 13
18 18 C 1.46497 * 120.00234 * 180.02562 * 17 15 14
19 19 C 1.53000 * 109.47087 * 179.97438 * 18 17 15
20 20 C 1.50695 * 109.47392 * 179.97438 * 19 18 17
21 21 C 1.38230 * 120.00292 * 269.73366 * 20 19 18
22 22 C 1.38241 * 120.00227 * 179.76702 * 21 20 19
23 23 C 1.38237 * 119.99744 * 0.49801 * 22 21 20
24 24 C 1.50699 * 119.99921 * 179.72662 * 23 22 21
25 25 O 1.42897 * 109.47381 * 270.02524 * 24 23 22
26 26 C 1.38233 * 120.00092 * 359.75091 * 23 22 21
27 27 C 1.38237 * 119.99814 * 89.99869 * 20 19 18
28 28 H 0.96993 * 120.00143 * 174.75649 * 1 2 3
29 29 H 1.07999 * 120.06103 * 359.97438 * 10 9 7
30 30 H 1.07994 * 119.71198 * 179.97438 * 11 10 9
31 31 H 1.07997 * 119.65686 * 179.97438 * 12 11 10
32 32 H 1.08001 * 119.95802 * 179.97438 * 13 12 11
33 33 H 0.97004 * 119.99726 * 359.97438 * 17 15 14
34 34 H 1.08997 * 109.47246 * 299.99875 * 18 17 15
35 35 H 1.09003 * 109.47046 * 60.00341 * 18 17 15
36 36 H 1.09000 * 109.47609 * 300.00348 * 19 18 17
37 37 H 1.09002 * 109.47398 * 60.00025 * 19 18 17
38 38 H 1.07996 * 120.00054 * 359.97438 * 21 20 19
39 39 H 1.07999 * 120.00147 * 180.23086 * 22 21 20
40 40 H 1.08997 * 109.47201 * 30.02570 * 24 23 22
41 41 H 1.08998 * 109.46814 * 150.02297 * 24 23 22
42 42 H 0.96696 * 113.99831 * 180.02562 * 25 24 23
43 43 H 1.07997 * 120.00232 * 179.97438 * 26 23 22
44 44 H 1.08003 * 120.00414 * 0.02562 * 27 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3063 0.0000 0.0000
3 14 2.2403 1.6178 0.0000
4 1 2.4878 2.0464 1.4001
5 1 3.5378 1.4402 -0.7000
6 1 1.4377 2.6527 -0.7000
7 6 2.0076 -1.2148 -0.0005
8 1 3.0433 -1.2403 -0.3059
9 6 1.3611 -2.4017 0.3974
10 6 0.3812 -2.3729 1.4068
11 6 -0.2448 -3.5375 1.7879
12 6 0.0820 -4.7446 1.1851
13 6 1.0409 -4.7997 0.1912
14 6 1.6873 -3.6373 -0.2204
15 6 2.7064 -3.6904 -1.2844
16 8 3.2291 -2.6650 -1.6775
17 7 3.0589 -4.8751 -1.8216
18 6 4.0719 -4.9278 -2.8785
19 6 4.2847 -6.3805 -3.3090
20 6 5.3263 -6.4348 -4.3966
21 6 4.9464 -6.3457 -5.7227
22 6 5.9024 -6.3906 -6.7202
23 6 7.2374 -6.5350 -6.3920
24 6 8.2790 -6.5901 -7.4797
25 8 8.4771 -7.9472 -7.8812
26 6 7.6170 -6.6292 -5.0662
27 6 6.6614 -6.5791 -4.0684
28 1 -0.4850 -0.8365 -0.0768
29 1 0.1209 -1.4384 1.8816
30 1 -0.9962 -3.5123 2.5632
31 1 -0.4183 -5.6498 1.4959
32 1 1.2864 -5.7452 -0.2695
33 1 2.6422 -5.6930 -1.5079
34 1 3.7362 -4.3407 -3.7333
35 1 5.0102 -4.5194 -2.5031
36 1 4.6206 -6.9674 -2.4541
37 1 3.3465 -6.7894 -3.6843
38 1 3.9029 -6.2376 -5.9793
39 1 5.6058 -6.3172 -7.7561
40 1 7.9429 -6.0036 -8.3347
41 1 9.2175 -6.1814 -7.1051
42 1 9.1362 -8.0583 -8.5800
43 1 8.6599 -6.7425 -4.8097
44 1 6.9579 -6.6535 -3.0326
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001417692154.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:49:51
Heat of formation + Delta-G solvation = -78.082339 kcal
Electronic energy + Delta-G solvation = -25603.047936 eV
Core-core repulsion = 21869.139128 eV
Total energy + Delta-G solvation = -3733.908808 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.146 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-40.90692 -40.44758 -38.84359 -37.73489 -36.37361 -35.73785 -33.85882 -31.95590
-31.89068 -31.26716 -30.05538 -27.31767 -26.46659 -24.43478 -23.71168 -23.45464
-22.66261 -21.71554 -21.10991 -19.94335 -18.37436 -18.15784 -17.30380 -16.94501
-16.86267 -16.52207 -16.17143 -16.03542 -15.81049 -15.66299 -15.41978 -14.92880
-14.57821 -14.50161 -14.39133 -14.18051 -14.08335 -13.75586 -13.62033 -13.13775
-12.92492 -12.71013 -12.65370 -12.48877 -12.44707 -12.06741 -11.94348 -11.90108
-11.87156 -11.45217 -10.99465 -10.96581 -10.38007 -10.03570 -9.86485 -9.63952
-9.60799 -9.49398 -9.10299 -6.46639 0.24773 0.39892 0.45498 0.90527
1.45198 1.61440 1.76177 2.24933 2.30242 2.37892 2.71505 2.74144
3.56044 3.56390 3.80739 3.88814 4.02092 4.07032 4.07398 4.17482
4.25561 4.29454 4.36759 4.45021 4.49959 4.55607 4.56806 4.70210
4.77587 4.88145 4.89491 4.99088 5.10708 5.14232 5.14350 5.41435
5.43142 5.57143 5.60795 5.65042 5.65617 5.71416 5.89697 5.96812
6.03535 6.20462 6.33892 6.69038 6.85606 6.89034 6.92720 7.60397
8.04179
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.016053 B = 0.002407 C = 0.002160
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1743.781303 B =11628.803252 C =12957.903633
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.818 5.818
2 C -0.004 4.004
3 Si 1.117 2.883
4 H -0.254 1.254
5 H -0.276 1.276
6 H -0.267 1.267
7 C -0.511 4.511
8 H 0.079 0.921
9 C 0.094 3.906
10 C -0.226 4.226
11 C -0.072 4.072
12 C -0.244 4.244
13 C -0.041 4.041
14 C -0.284 4.284
15 C 0.556 3.444
16 O -0.581 6.581
17 N -0.727 5.727
18 C 0.135 3.865
19 C -0.078 4.078
20 C -0.084 4.084
21 C -0.127 4.127
22 C -0.109 4.109
23 C -0.113 4.113
24 C 0.118 3.882
25 O -0.589 6.589
26 C -0.109 4.109
27 C -0.127 4.127
28 H 0.283 0.717
29 H 0.089 0.911
30 H 0.125 0.875
31 H 0.138 0.862
32 H 0.138 0.862
33 H 0.408 0.592
34 H 0.045 0.955
35 H 0.048 0.952
36 H 0.095 0.905
37 H 0.094 0.906
38 H 0.134 0.866
39 H 0.136 0.864
40 H 0.068 0.932
41 H 0.069 0.931
42 H 0.399 0.601
43 H 0.137 0.863
44 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.033 -15.076 -11.262 22.336
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.442 5.442
2 C -0.219 4.219
3 Si 0.935 3.065
4 H -0.179 1.179
5 H -0.201 1.201
6 H -0.191 1.191
7 C -0.539 4.539
8 H 0.097 0.903
9 C 0.090 3.910
10 C -0.245 4.245
11 C -0.091 4.091
12 C -0.262 4.262
13 C -0.059 4.059
14 C -0.289 4.289
15 C 0.349 3.651
16 O -0.463 6.463
17 N -0.382 5.382
18 C 0.011 3.989
19 C -0.115 4.115
20 C -0.084 4.084
21 C -0.145 4.145
22 C -0.127 4.127
23 C -0.113 4.113
24 C 0.041 3.959
25 O -0.399 6.399
26 C -0.127 4.127
27 C -0.145 4.145
28 H 0.095 0.905
29 H 0.107 0.893
30 H 0.143 0.857
31 H 0.156 0.844
32 H 0.156 0.844
33 H 0.246 0.754
34 H 0.064 0.936
35 H 0.066 0.934
36 H 0.114 0.886
37 H 0.112 0.888
38 H 0.152 0.848
39 H 0.154 0.846
40 H 0.086 0.914
41 H 0.087 0.913
42 H 0.250 0.750
43 H 0.155 0.845
44 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges 11.715 -12.827 -11.061 20.594
hybrid contribution 0.206 -1.620 -0.294 1.660
sum 11.921 -14.447 -11.355 21.903
Atomic orbital electron populations
1.70466 1.08563 1.33109 1.32054 1.28466 0.95884 1.07384 0.90177
0.82991 0.74435 0.69951 0.79123 1.17883 1.20087 1.19135 1.21117
1.00989 0.93616 1.38135 0.90290 1.17924 0.90448 0.93013 0.89594
1.21207 1.04155 0.97858 1.01273 1.21170 0.97243 0.92637 0.98014
1.20829 1.04410 0.97667 1.03339 1.21173 0.93784 0.95948 0.95044
1.19810 1.08353 0.95978 1.04733 1.18463 0.81849 0.82999 0.81754
1.90666 1.56637 1.35068 1.63945 1.45749 1.43390 1.08644 1.40379
1.21146 0.90834 0.97407 0.89516 1.20706 0.98804 0.94350 0.97648
1.19851 0.94535 0.99597 0.94436 1.21305 1.00475 1.00390 0.92368
1.21285 0.92414 0.98944 1.00104 1.19998 0.94845 1.01691 0.94810
1.21018 0.96410 0.83567 0.94951 1.86509 1.65712 1.26635 1.61023
1.21289 1.00364 0.98798 0.92248 1.21311 0.92456 1.00373 1.00311
0.90482 0.89296 0.85739 0.84435 0.84436 0.75440 0.93629 0.93407
0.88618 0.88766 0.84839 0.84573 0.91379 0.91321 0.75015 0.84489
0.84699
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -46.23 12.57 21.88 0.27 -45.96 16
2 C 0.00 -0.22 5.04 85.37 0.43 0.21 16
3 Si 1.12 47.98 29.98 68.60 2.06 50.04 16
4 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16
5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16
6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16
7 C -0.51 -30.00 7.66 23.41 0.18 -29.82 16
8 H 0.08 4.94 5.91 -2.91 -0.02 4.93 16
9 C 0.09 5.21 5.18 -21.11 -0.11 5.10 16
10 C -0.23 -11.48 7.86 22.72 0.18 -11.30 16
11 C -0.07 -3.03 10.01 22.26 0.22 -2.81 16
12 C -0.24 -9.12 10.03 22.41 0.22 -8.90 16
13 C -0.04 -1.58 9.53 22.50 0.21 -1.37 16
14 C -0.28 -13.81 5.92 -19.70 -0.12 -13.93 16
15 C 0.56 26.25 7.73 86.66 0.67 26.92 16
16 O -0.58 -32.69 13.55 -4.09 -0.06 -32.74 16
17 N -0.73 -24.64 5.51 -466.37 -2.57 -27.20 16
18 C 0.13 4.00 5.66 86.38 0.49 4.49 16
19 C -0.08 -1.57 5.46 29.85 0.16 -1.41 16
20 C -0.08 -1.79 5.13 -19.87 -0.10 -1.90 16
21 C -0.13 -2.67 9.70 22.27 0.22 -2.45 16
22 C -0.11 -2.17 9.70 22.27 0.22 -1.95 16
23 C -0.11 -2.20 5.51 -19.87 -0.11 -2.31 16
24 C 0.12 1.62 7.17 71.24 0.51 2.13 16
25 O -0.59 -8.73 13.64 -148.98 -2.03 -10.76 16
26 C -0.11 -2.13 9.70 22.27 0.22 -1.92 16
27 C -0.13 -2.61 9.70 22.27 0.22 -2.40 16
28 H 0.28 16.45 6.54 -92.71 -0.61 15.84 16
29 H 0.09 4.75 6.93 -2.91 -0.02 4.73 16
30 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16
31 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16
32 H 0.14 3.97 6.41 -2.91 -0.02 3.95 16
33 H 0.41 10.83 6.51 -92.71 -0.60 10.22 16
34 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16
35 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16
36 H 0.10 1.64 8.09 -2.39 -0.02 1.62 16
37 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16
38 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16
39 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16
40 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16
41 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16
42 H 0.40 1.79 9.12 -74.06 -0.68 1.12 16
43 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16
44 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16
Total: -1.00 -76.17 371.65 1.31 -74.86
By element:
Atomic # 1 Polarization: 35.44 SS G_CDS: -0.08 Total: 35.37 kcal
Atomic # 6 Polarization: -47.31 SS G_CDS: 3.71 Total: -43.60 kcal
Atomic # 7 Polarization: -70.87 SS G_CDS: -2.29 Total: -73.16 kcal
Atomic # 8 Polarization: -41.41 SS G_CDS: -2.09 Total: -43.50 kcal
Atomic # 14 Polarization: 47.98 SS G_CDS: 2.06 Total: 50.04 kcal
Total: -76.17 1.31 -74.86 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001417692154.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.220 kcal
(2) G-P(sol) polarization free energy of solvation -76.171 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.391 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.863 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.082 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds