Wall clock time and date at job start Tue Mar 31 2020 14:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35899 * 116.99471 * 2 1 4 4 C 1.38743 * 120.05930 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94702 * 180.02562 * 4 3 2 6 6 C 1.38293 * 120.05193 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94298 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.46932 * 259.99511 * 7 6 5 9 9 C 1.34774 * 120.00234 * 179.97438 * 8 7 6 10 10 O 1.21618 * 119.99610 * 359.97438 * 9 8 7 11 11 C 1.47428 * 120.00477 * 180.02562 * 9 8 7 12 12 C 1.39232 * 120.28208 * 357.04743 * 11 9 8 13 13 C 1.38215 * 120.09251 * 180.27997 * 12 11 9 14 14 C 1.38828 * 120.67982 * 359.72196 * 13 12 11 15 15 C 1.37601 * 120.56733 * 359.97438 * 14 13 12 16 16 C 1.40710 * 119.87923 * 0.02562 * 15 14 13 17 17 C 1.40893 * 120.32564 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00188 * 145.85296 * 17 16 15 19 19 C 1.40270 * 120.00050 * 325.85202 * 17 16 15 20 20 N 1.30633 * 120.00337 * 340.94070 * 19 17 16 21 21 Si 1.86803 * 120.00071 * 160.94406 * 19 17 16 22 22 H 1.48504 * 109.46841 * 269.99758 * 21 19 17 23 23 H 1.48499 * 109.46952 * 29.99859 * 21 19 17 24 24 H 1.48502 * 109.47138 * 150.00196 * 21 19 17 25 25 C 1.38242 * 120.10859 * 0.24541 * 6 5 4 26 26 C 1.50701 * 119.96782 * 179.70903 * 25 6 5 27 27 C 1.38165 * 120.06116 * 359.45817 * 25 6 5 28 28 H 1.09005 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46752 * 299.99198 * 1 2 3 30 30 H 1.08994 * 109.47582 * 59.99639 * 1 2 3 31 31 H 1.08004 * 120.03015 * 0.03695 * 4 3 2 32 32 H 1.07997 * 119.97748 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47118 * 139.99478 * 7 6 5 34 34 H 1.09003 * 109.46911 * 19.99172 * 7 6 5 35 35 H 0.97004 * 120.00040 * 0.02562 * 8 7 6 36 36 H 1.07999 * 119.94924 * 359.97438 * 12 11 9 37 37 H 1.07997 * 119.66332 * 179.73917 * 13 12 11 38 38 H 1.07994 * 119.72068 * 180.02562 * 14 13 12 39 39 H 1.07997 * 120.06010 * 180.02562 * 15 14 13 40 40 H 0.97002 * 119.99441 * 354.76148 * 20 19 17 41 41 H 1.08995 * 109.47274 * 89.99953 * 26 25 6 42 42 H 1.09003 * 109.47332 * 210.00513 * 26 25 6 43 43 H 1.09008 * 109.47068 * 330.00002 * 26 25 6 44 44 H 1.07993 * 120.03062 * 180.24568 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 3.9860 5.0186 -0.0028 8 7 4.4199 5.3444 -1.3636 9 6 5.0588 6.5057 -1.6073 10 8 5.2747 7.2835 -0.6976 11 6 5.4950 6.8339 -2.9769 12 6 5.3049 5.9219 -4.0117 13 6 5.7206 6.2313 -5.2930 14 6 6.3249 7.4508 -5.5667 15 6 6.5207 8.3749 -4.5661 16 6 6.1067 8.0846 -3.2530 17 6 6.3021 9.0241 -2.2214 18 1 5.5799 9.1071 -1.4226 19 6 7.4345 9.8518 -2.2318 20 7 8.4754 9.5256 -2.9505 21 14 7.4542 11.4206 -1.2178 22 1 6.9316 12.5448 -2.0352 23 1 6.6003 11.2437 -0.0158 24 1 8.8463 11.7202 -0.7965 25 6 4.0559 2.5172 -0.0078 26 6 5.5607 2.5983 -0.0162 27 6 3.4311 1.2848 -0.0011 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 0.2127 2.3203 0.0016 32 1 1.3339 4.5114 0.0000 33 1 4.8530 4.9852 0.6569 34 1 3.2908 5.7808 0.3492 35 1 4.2467 4.7245 -2.0893 36 1 4.8364 4.9696 -3.8118 37 1 5.5735 5.5171 -6.0897 38 1 6.6433 7.6766 -6.5736 39 1 6.9913 9.3212 -4.7882 40 1 8.4958 8.6750 -3.4164 41 1 5.9293 2.6162 1.0094 42 1 5.9685 1.7301 -0.5338 43 1 5.8727 3.5075 -0.5303 44 1 4.0206 0.3800 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433788598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:45 Heat of formation + Delta-G solvation = -39.466255 kcal Electronic energy + Delta-G solvation = -26485.765679 eV Core-core repulsion = 22753.531390 eV Total energy + Delta-G solvation = -3732.234289 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.47129 -39.08936 -38.08999 -36.86344 -34.30707 -33.72214 -32.63339 -31.10691 -29.87500 -29.31635 -28.14055 -26.73768 -25.69971 -24.79961 -22.47307 -22.08871 -21.00293 -20.60235 -19.48634 -18.10743 -17.92715 -16.70495 -16.61483 -16.00651 -15.45063 -15.05060 -14.69480 -14.63901 -14.17628 -14.12782 -13.91205 -13.78694 -13.53555 -13.44282 -13.35812 -12.60473 -12.41946 -12.36719 -12.16772 -12.10491 -12.07929 -11.66027 -11.32321 -11.14357 -11.05952 -10.95653 -10.87551 -10.73762 -10.36647 -10.15233 -9.61206 -9.07388 -8.92838 -8.62675 -8.38560 -8.18931 -7.78011 -7.59792 -7.13198 -4.45349 1.16086 1.22450 2.24966 2.74175 3.01161 3.20669 3.31700 3.42488 3.47111 4.04828 4.07986 4.18130 4.57941 4.65125 4.65967 4.79067 4.81707 4.83834 5.07071 5.14551 5.20920 5.27312 5.46894 5.59286 5.63095 5.71412 5.81055 5.87870 5.91582 6.03082 6.09232 6.16400 6.20704 6.26900 6.51743 6.56368 6.62730 6.72648 6.99773 7.10359 7.17495 7.28935 7.50366 7.61969 7.73294 7.89987 8.10384 8.22529 8.38950 8.74244 8.87353 9.36725 10.05316 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.002847 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.804308 B = 9832.774901 C =10583.262620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.130 3.870 4 C -0.217 4.217 5 C -0.058 4.058 6 C -0.137 4.137 7 C 0.170 3.830 8 N -0.744 5.744 9 C 0.563 3.437 10 O -0.537 6.537 11 C -0.264 4.264 12 C -0.043 4.043 13 C -0.259 4.259 14 C -0.076 4.076 15 C -0.201 4.201 16 C 0.121 3.879 17 C -0.466 4.466 18 H 0.106 0.894 19 C 0.031 3.969 20 N -0.795 5.795 21 Si 1.073 2.927 22 H -0.275 1.275 23 H -0.273 1.273 24 H -0.277 1.277 25 C -0.026 4.026 26 C -0.125 4.125 27 C -0.156 4.156 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.392 0.608 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.298 0.702 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.426 -14.492 4.868 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.085 3.915 4 C -0.235 4.235 5 C -0.076 4.076 6 C -0.138 4.138 7 C 0.046 3.954 8 N -0.399 5.399 9 C 0.357 3.643 10 O -0.415 6.415 11 C -0.269 4.269 12 C -0.062 4.062 13 C -0.279 4.279 14 C -0.095 4.095 15 C -0.220 4.220 16 C 0.116 3.884 17 C -0.493 4.493 18 H 0.124 0.876 19 C -0.191 4.191 20 N -0.418 5.418 21 Si 0.896 3.104 22 H -0.201 1.201 23 H -0.197 1.197 24 H -0.202 1.202 25 C -0.026 4.026 26 C -0.182 4.182 27 C -0.175 4.175 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.226 0.774 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.214 -12.776 5.889 17.384 hybrid contribution -1.400 -1.806 -0.924 2.464 sum -11.614 -14.581 4.965 19.291 Atomic orbital electron populations 1.23047 0.78444 1.03821 1.01434 1.86060 1.21358 1.27100 1.88760 1.19014 0.92287 0.84050 0.96117 1.21174 0.99916 0.92251 1.10194 1.20899 0.93797 0.97184 0.95750 1.19821 0.93504 0.94798 1.05631 1.19913 0.98296 0.91431 0.85748 1.46106 1.62410 1.22456 1.08936 1.18396 0.76735 0.79758 0.89402 1.90684 1.55803 1.48449 1.46604 1.19383 1.19188 0.97114 0.91225 1.20720 0.96154 0.96158 0.93140 1.20240 1.12564 0.99043 0.96043 1.20743 0.97292 0.94084 0.97339 1.21256 1.08457 0.99506 0.92820 1.17514 0.88852 0.89678 0.92362 1.21211 1.07555 1.12402 1.08108 0.87621 1.27265 0.92073 1.03225 0.96527 1.70364 1.28353 1.23620 1.19466 0.83525 0.77124 0.73468 0.76289 1.20088 1.19734 1.20167 1.19639 0.96288 0.91430 0.95262 1.20952 0.90376 1.03902 1.02940 1.20264 0.91224 0.98080 1.07905 0.88333 0.92651 0.92597 0.85522 0.85463 0.91199 0.91556 0.77351 0.89161 0.88943 0.88911 0.87540 0.88775 0.90641 0.91266 0.90022 0.85205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.36 10.50 -19.42 -0.20 -3.57 16 3 C 0.13 1.50 6.69 -39.22 -0.26 1.23 16 4 C -0.22 -2.31 9.04 -39.44 -0.36 -2.67 16 5 C -0.06 -0.67 9.66 -39.60 -0.38 -1.05 16 6 C -0.14 -1.77 5.25 -104.60 -0.55 -2.32 16 7 C 0.17 2.60 4.92 -5.20 -0.03 2.58 16 8 N -0.74 -13.11 4.81 -62.56 -0.30 -13.42 16 9 C 0.56 12.90 7.73 -12.52 -0.10 12.80 16 10 O -0.54 -14.06 13.55 5.26 0.07 -13.99 16 11 C -0.26 -6.39 5.92 -104.37 -0.62 -7.00 16 12 C -0.04 -0.90 9.53 -39.22 -0.37 -1.28 16 13 C -0.26 -5.45 10.03 -39.37 -0.39 -5.84 16 14 C -0.08 -1.68 10.01 -39.60 -0.40 -2.07 16 15 C -0.20 -5.01 7.86 -38.88 -0.31 -5.32 16 16 C 0.12 3.20 5.18 -106.54 -0.55 2.65 16 17 C -0.47 -12.77 7.66 -37.81 -0.29 -13.06 16 18 H 0.11 3.03 5.91 -52.49 -0.31 2.72 16 19 C 0.03 0.80 5.04 -17.30 -0.09 0.71 16 20 N -0.79 -21.29 12.57 55.56 0.70 -20.59 16 21 Si 1.07 22.60 29.98 -169.99 -5.10 17.50 16 22 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 25 C -0.03 -0.31 5.88 -104.65 -0.62 -0.93 16 26 C -0.13 -1.44 9.26 36.01 0.33 -1.11 16 27 C -0.16 -1.82 9.64 -39.43 -0.38 -2.20 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 30 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.13 1.05 6.30 -52.48 -0.33 0.72 16 32 H 0.13 1.33 8.03 -52.49 -0.42 0.91 16 33 H 0.07 1.12 7.29 -51.93 -0.38 0.74 16 34 H 0.07 1.04 8.00 -51.93 -0.42 0.63 16 35 H 0.39 6.25 6.50 -40.82 -0.27 5.98 16 36 H 0.09 1.60 6.41 -52.49 -0.34 1.26 16 37 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 39 H 0.11 2.71 6.93 -52.49 -0.36 2.34 16 40 H 0.30 8.17 6.54 -40.82 -0.27 7.91 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 43 H 0.08 1.10 6.32 -51.92 -0.33 0.77 16 44 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -30.64 363.94 -9.25 -39.89 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -5.54 Total: 12.39 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -4.36 Total: -23.71 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.40 Total: -34.00 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.13 Total: -17.55 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.10 Total: 17.50 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.64 -9.25 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433788598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.420 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds