Wall clock time and date at job start Tue Mar 31 2020 14:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35899 * 116.99471 * 2 1 4 4 C 1.38743 * 120.05930 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94702 * 180.02562 * 4 3 2 6 6 C 1.38293 * 120.05193 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94298 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.46932 * 259.99511 * 7 6 5 9 9 C 1.34774 * 120.00234 * 179.97438 * 8 7 6 10 10 O 1.21618 * 119.99610 * 359.97438 * 9 8 7 11 11 C 1.47428 * 120.00477 * 180.02562 * 9 8 7 12 12 C 1.39232 * 120.28208 * 357.04743 * 11 9 8 13 13 C 1.38215 * 120.09251 * 180.27997 * 12 11 9 14 14 C 1.38828 * 120.67982 * 359.72196 * 13 12 11 15 15 C 1.37601 * 120.56733 * 359.97438 * 14 13 12 16 16 C 1.40710 * 119.87923 * 0.02562 * 15 14 13 17 17 C 1.40893 * 120.32564 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00188 * 145.85296 * 17 16 15 19 19 C 1.40270 * 120.00050 * 325.85202 * 17 16 15 20 20 N 1.30633 * 120.00337 * 340.94070 * 19 17 16 21 21 Si 1.86803 * 120.00071 * 160.94406 * 19 17 16 22 22 H 1.48504 * 109.46841 * 269.99758 * 21 19 17 23 23 H 1.48499 * 109.46952 * 29.99859 * 21 19 17 24 24 H 1.48502 * 109.47138 * 150.00196 * 21 19 17 25 25 C 1.38242 * 120.10859 * 0.24541 * 6 5 4 26 26 C 1.50701 * 119.96782 * 179.70903 * 25 6 5 27 27 C 1.38165 * 120.06116 * 359.45817 * 25 6 5 28 28 H 1.09005 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46752 * 299.99198 * 1 2 3 30 30 H 1.08994 * 109.47582 * 59.99639 * 1 2 3 31 31 H 1.08004 * 120.03015 * 0.03695 * 4 3 2 32 32 H 1.07997 * 119.97748 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47118 * 139.99478 * 7 6 5 34 34 H 1.09003 * 109.46911 * 19.99172 * 7 6 5 35 35 H 0.97004 * 120.00040 * 0.02562 * 8 7 6 36 36 H 1.07999 * 119.94924 * 359.97438 * 12 11 9 37 37 H 1.07997 * 119.66332 * 179.73917 * 13 12 11 38 38 H 1.07994 * 119.72068 * 180.02562 * 14 13 12 39 39 H 1.07997 * 120.06010 * 180.02562 * 15 14 13 40 40 H 0.97002 * 119.99441 * 354.76148 * 20 19 17 41 41 H 1.08995 * 109.47274 * 89.99953 * 26 25 6 42 42 H 1.09003 * 109.47332 * 210.00513 * 26 25 6 43 43 H 1.09008 * 109.47068 * 330.00002 * 26 25 6 44 44 H 1.07993 * 120.03062 * 180.24568 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 3.9860 5.0186 -0.0028 8 7 4.4199 5.3444 -1.3636 9 6 5.0588 6.5057 -1.6073 10 8 5.2747 7.2835 -0.6976 11 6 5.4950 6.8339 -2.9769 12 6 5.3049 5.9219 -4.0117 13 6 5.7206 6.2313 -5.2930 14 6 6.3249 7.4508 -5.5667 15 6 6.5207 8.3749 -4.5661 16 6 6.1067 8.0846 -3.2530 17 6 6.3021 9.0241 -2.2214 18 1 5.5799 9.1071 -1.4226 19 6 7.4345 9.8518 -2.2318 20 7 8.4754 9.5256 -2.9505 21 14 7.4542 11.4206 -1.2178 22 1 6.9316 12.5448 -2.0352 23 1 6.6003 11.2437 -0.0158 24 1 8.8463 11.7202 -0.7965 25 6 4.0559 2.5172 -0.0078 26 6 5.5607 2.5983 -0.0162 27 6 3.4311 1.2848 -0.0011 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 0.2127 2.3203 0.0016 32 1 1.3339 4.5114 0.0000 33 1 4.8530 4.9852 0.6569 34 1 3.2908 5.7808 0.3492 35 1 4.2467 4.7245 -2.0893 36 1 4.8364 4.9696 -3.8118 37 1 5.5735 5.5171 -6.0897 38 1 6.6433 7.6766 -6.5736 39 1 6.9913 9.3212 -4.7882 40 1 8.4958 8.6750 -3.4164 41 1 5.9293 2.6162 1.0094 42 1 5.9685 1.7301 -0.5338 43 1 5.8727 3.5075 -0.5303 44 1 4.0206 0.3800 -0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433788598.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:44 Heat of formation + Delta-G solvation = -56.466768 kcal Electronic energy + Delta-G solvation = -26486.502876 eV Core-core repulsion = 22753.531390 eV Total energy + Delta-G solvation = -3732.971486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.39467 -40.70248 -39.20010 -38.51903 -36.01917 -35.36196 -33.53843 -32.46367 -31.51669 -31.00540 -29.02514 -27.48993 -27.29128 -26.27023 -24.00925 -23.21222 -22.73308 -21.62485 -21.20746 -19.95493 -18.71297 -18.26325 -17.55024 -17.01582 -16.64872 -16.58838 -16.18305 -15.98129 -15.76041 -15.57925 -15.34033 -15.12825 -14.69054 -14.57755 -14.32898 -14.24322 -13.90814 -13.84885 -13.38953 -13.12376 -13.10064 -12.89871 -12.76420 -12.67470 -12.48637 -12.33132 -12.05448 -11.95082 -11.85963 -11.76660 -11.44448 -10.95332 -10.39223 -10.00529 -9.80547 -9.60280 -9.49237 -9.17383 -9.07505 -6.45120 0.25141 0.32364 0.40875 0.90945 1.46896 1.62823 1.77691 2.26395 2.31641 2.32278 2.37667 2.75349 2.86342 3.56973 3.67376 3.76366 3.89085 4.10849 4.21417 4.26736 4.27954 4.34020 4.39977 4.41607 4.44370 4.61167 4.66295 4.72425 4.74337 4.80136 4.85435 4.88647 4.98286 5.11961 5.14781 5.29641 5.34558 5.43688 5.54828 5.63872 5.66794 5.71863 5.73250 5.90432 5.97799 6.21217 6.34202 6.40578 6.69438 6.86326 6.93488 7.61124 8.05646 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018419 B = 0.002847 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.804308 B = 9832.774901 C =10583.262620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.130 3.870 4 C -0.214 4.214 5 C -0.060 4.060 6 C -0.151 4.151 7 C 0.174 3.826 8 N -0.720 5.720 9 C 0.559 3.441 10 O -0.578 6.578 11 C -0.281 4.281 12 C -0.041 4.041 13 C -0.244 4.244 14 C -0.072 4.072 15 C -0.225 4.225 16 C 0.095 3.905 17 C -0.508 4.508 18 H 0.081 0.919 19 C -0.003 4.003 20 N -0.818 5.818 21 Si 1.118 2.882 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.268 1.268 25 C -0.028 4.028 26 C -0.123 4.123 27 C -0.164 4.164 28 H 0.119 0.881 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.152 0.848 32 H 0.137 0.863 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.403 0.597 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.124 0.876 39 H 0.090 0.910 40 H 0.283 0.717 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.329 -17.114 3.922 22.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.084 3.916 4 C -0.232 4.232 5 C -0.078 4.078 6 C -0.151 4.151 7 C 0.051 3.949 8 N -0.374 5.374 9 C 0.352 3.648 10 O -0.460 6.460 11 C -0.285 4.285 12 C -0.060 4.060 13 C -0.263 4.263 14 C -0.090 4.090 15 C -0.245 4.245 16 C 0.091 3.909 17 C -0.536 4.536 18 H 0.099 0.901 19 C -0.219 4.219 20 N -0.442 5.442 21 Si 0.935 3.065 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.192 1.192 25 C -0.029 4.029 26 C -0.179 4.179 27 C -0.183 4.183 28 H 0.138 0.862 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.170 0.830 32 H 0.155 0.845 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.240 0.760 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.142 0.858 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.077 0.923 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.151 -15.456 4.916 20.266 hybrid contribution -1.011 -1.336 -0.723 1.825 sum -13.162 -16.792 4.193 21.744 Atomic orbital electron populations 1.23363 0.76361 1.05645 1.02330 1.86054 1.23539 1.26618 1.88428 1.19178 0.92435 0.84741 0.95237 1.21405 1.01218 0.91422 1.09180 1.21046 0.93286 0.98200 0.95301 1.19592 0.94105 0.93389 1.08046 1.19912 0.97948 0.93018 0.83974 1.45859 1.60431 1.20686 1.10464 1.18420 0.76917 0.80742 0.88729 1.90665 1.57583 1.50144 1.47561 1.19781 1.18683 0.97153 0.92928 1.21115 0.95437 0.96960 0.92477 1.20792 1.09728 0.98851 0.96962 1.21150 0.95993 0.93831 0.98069 1.21213 1.10023 1.00041 0.93190 1.17908 0.89402 0.90599 0.92950 1.21118 1.08516 1.15321 1.08669 0.90095 1.28462 0.91214 1.05426 0.96759 1.70472 1.28834 1.23237 1.21680 0.82989 0.77473 0.70874 0.75148 1.18004 1.19938 1.19228 1.19672 0.96419 0.91508 0.95287 1.20928 0.90329 1.03395 1.03294 1.20411 0.91811 0.98126 1.07938 0.86244 0.91629 0.91735 0.83029 0.84534 0.92222 0.92143 0.76032 0.85193 0.84714 0.85776 0.89222 0.90466 0.90028 0.89628 0.92340 0.84082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -6.07 10.50 -92.42 -0.97 -7.04 16 3 C 0.13 2.63 6.69 22.51 0.15 2.78 16 4 C -0.21 -3.95 9.04 22.36 0.20 -3.75 16 5 C -0.06 -1.28 9.66 22.26 0.22 -1.06 16 6 C -0.15 -3.72 5.25 -19.85 -0.10 -3.82 16 7 C 0.17 5.37 4.92 85.63 0.42 5.80 16 8 N -0.72 -25.18 4.81 -470.10 -2.26 -27.44 16 9 C 0.56 26.21 7.73 86.66 0.67 26.88 16 10 O -0.58 -31.84 13.55 -4.09 -0.06 -31.89 16 11 C -0.28 -13.68 5.92 -19.70 -0.12 -13.79 16 12 C -0.04 -1.64 9.53 22.50 0.21 -1.43 16 13 C -0.24 -9.36 10.03 22.41 0.22 -9.14 16 14 C -0.07 -3.05 10.01 22.26 0.22 -2.82 16 15 C -0.23 -11.47 7.86 22.72 0.18 -11.29 16 16 C 0.10 5.25 5.18 -21.11 -0.11 5.14 16 17 C -0.51 -29.57 7.66 23.41 0.18 -29.39 16 18 H 0.08 4.99 5.91 -2.91 -0.02 4.98 16 19 C 0.00 -0.19 5.04 85.37 0.43 0.25 16 20 N -0.82 -46.01 12.57 21.88 0.27 -45.73 16 21 Si 1.12 47.57 29.98 68.60 2.06 49.63 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 25 C -0.03 -0.65 5.88 -19.88 -0.12 -0.77 16 26 C -0.12 -2.71 9.26 71.24 0.66 -2.05 16 27 C -0.16 -3.48 9.64 22.37 0.22 -3.26 16 28 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 30 H 0.06 0.53 7.66 -2.39 -0.02 0.52 16 31 H 0.15 1.97 6.30 -2.91 -0.02 1.95 16 32 H 0.14 2.60 8.03 -2.91 -0.02 2.58 16 33 H 0.06 1.97 7.29 -2.39 -0.02 1.95 16 34 H 0.06 1.94 8.00 -2.39 -0.02 1.92 16 35 H 0.40 12.15 6.50 -92.71 -0.60 11.54 16 36 H 0.13 4.08 6.41 -2.91 -0.02 4.06 16 37 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 38 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 39 H 0.09 4.78 6.93 -2.91 -0.02 4.76 16 40 H 0.28 16.38 6.54 -92.71 -0.61 15.78 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.08 1.56 8.09 -2.39 -0.02 1.54 16 43 H 0.06 1.56 6.32 -2.38 -0.02 1.54 16 44 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -70.53 363.94 4.29 -66.23 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: 0.60 Total: 36.68 kcal Atomic # 6 Polarization: -45.09 SS G_CDS: 4.65 Total: -40.44 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -1.99 Total: -73.17 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -1.03 Total: -38.93 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.06 Total: 49.63 kcal Total: -70.53 4.29 -66.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433788598.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.765 kcal (2) G-P(sol) polarization free energy of solvation -70.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds