Wall clock time and date at job start Tue Mar 31 2020 14:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00149 * 2 1 4 4 C 1.38218 * 119.99829 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00007 * 359.75083 * 4 3 2 6 6 C 1.38221 * 119.99768 * 0.50137 * 5 4 3 7 7 C 1.50702 * 119.99572 * 179.76996 * 6 5 4 8 8 H 1.09005 * 109.46862 * 204.73051 * 7 6 5 9 9 O 1.42894 * 109.47260 * 324.72804 * 7 6 5 10 10 C 1.52995 * 109.47299 * 84.73167 * 7 6 5 11 11 N 1.46494 * 109.47394 * 179.97438 * 10 7 6 12 12 C 1.34776 * 120.00009 * 179.97438 * 11 10 7 13 13 O 1.21609 * 120.00181 * 0.02562 * 12 11 10 14 14 C 1.47435 * 119.99851 * 180.02562 * 12 11 10 15 15 C 1.39235 * 120.28378 * 356.68142 * 14 12 11 16 16 C 1.38223 * 120.09183 * 180.28231 * 15 14 12 17 17 C 1.38824 * 120.67578 * 359.69536 * 16 15 14 18 18 C 1.37601 * 120.57302 * 0.02562 * 17 16 15 19 19 C 1.40712 * 119.87956 * 0.02562 * 18 17 16 20 20 C 1.40891 * 120.32906 * 179.97438 * 19 18 17 21 21 H 1.07992 * 120.00234 * 145.79747 * 20 19 18 22 22 C 1.40273 * 119.99571 * 325.79352 * 20 19 18 23 23 N 1.30635 * 120.00253 * 340.74281 * 22 20 19 24 24 Si 1.86798 * 119.99912 * 160.74547 * 22 20 19 25 25 H 1.48507 * 109.47415 * 179.97438 * 24 22 20 26 26 H 1.48498 * 109.47275 * 299.99863 * 24 22 20 27 27 H 1.48501 * 109.47305 * 59.99898 * 24 22 20 28 28 C 1.38216 * 119.99486 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46667 * 270.02330 * 1 2 3 30 30 H 1.09003 * 109.46742 * 30.01504 * 1 2 3 31 31 H 1.08990 * 109.47538 * 150.01992 * 1 2 3 32 32 H 1.07992 * 120.00014 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.99774 * 180.02562 * 4 3 2 34 34 H 1.07997 * 119.99812 * 180.27560 * 5 4 3 35 35 H 0.96703 * 114.00105 * 59.99829 * 9 7 6 36 36 H 1.09004 * 109.47250 * 59.99582 * 10 7 6 37 37 H 1.09005 * 109.47069 * 299.99758 * 10 7 6 38 38 H 0.96994 * 119.99831 * 359.97438 * 11 10 7 39 39 H 1.08001 * 119.94893 * 359.97438 * 15 14 12 40 40 H 1.07988 * 119.65914 * 179.72052 * 16 15 14 41 41 H 1.08002 * 119.71756 * 180.02562 * 17 16 15 42 42 H 1.07997 * 120.06577 * 180.02562 * 18 17 16 43 43 H 0.97003 * 120.00071 * 354.83739 * 23 22 20 44 44 H 1.07998 * 120.00107 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0063 6 6 3.5806 -1.1971 0.0010 7 6 4.3341 -2.5022 0.0020 8 1 3.7093 -3.2828 -0.4321 9 8 5.5282 -2.3634 -0.7703 10 6 4.6973 -2.8803 1.4393 11 7 5.4293 -4.1493 1.4404 12 6 5.8542 -4.6812 2.6036 13 8 5.6295 -4.1079 3.6523 14 6 6.5913 -5.9580 2.6046 15 6 6.7918 -6.6539 1.4154 16 6 7.4784 -7.8535 1.4217 17 6 7.9806 -8.3759 2.6059 18 6 7.8034 -7.7084 3.7960 19 6 7.1071 -6.4858 3.8171 20 6 6.9196 -5.7947 5.0305 21 1 6.9158 -4.7148 5.0418 22 6 6.7378 -6.5093 6.2238 23 7 6.3686 -7.7618 6.1853 24 14 7.0237 -5.6700 7.8679 25 1 6.7657 -6.6342 8.9675 26 1 8.4290 -5.1962 7.9441 27 1 6.1032 -4.5122 7.9993 28 6 2.1980 -1.1971 0.0005 29 1 -0.3632 0.0004 1.0277 30 1 -0.3633 0.8899 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6584 2.1326 0.0004 33 1 4.1205 2.1325 0.0010 34 1 5.3517 -0.0001 0.0112 35 1 6.1330 -1.6845 -0.4410 36 1 3.7864 -2.9862 2.0285 37 1 5.3222 -2.0997 1.8735 38 1 5.6081 -4.6067 0.6040 39 1 6.4060 -6.2582 0.4875 40 1 7.6260 -8.3897 0.4961 41 1 8.5151 -9.3143 2.5929 42 1 8.1979 -8.1221 4.7123 43 1 6.1476 -8.1765 5.3367 44 1 1.6579 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001445918814.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:49 Heat of formation + Delta-G solvation = -56.382805 kcal Electronic energy + Delta-G solvation = -26289.851688 eV Core-core repulsion = 22556.883842 eV Total energy + Delta-G solvation = -3732.967845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.08885 -38.97829 -37.52540 -36.69914 -34.15015 -33.49555 -32.94638 -31.82838 -30.16295 -29.39920 -27.88063 -27.14267 -25.24439 -23.77775 -22.42021 -22.04234 -20.89440 -20.70946 -19.41826 -18.14524 -17.53701 -16.66920 -16.21639 -16.06848 -15.05112 -14.92845 -14.85810 -14.61141 -14.19315 -14.08286 -13.88426 -13.80035 -13.65333 -13.41496 -13.30951 -12.65582 -12.51142 -12.40489 -12.21175 -12.12086 -11.89373 -11.65663 -11.38193 -11.13600 -11.11583 -10.90352 -10.73704 -10.37007 -10.32869 -10.14976 -9.60904 -9.07226 -9.03965 -8.85163 -8.51555 -8.41609 -7.78016 -7.59709 -7.14057 -4.45595 1.06980 1.15180 2.24917 2.74881 3.20592 3.31424 3.41162 3.43591 3.82540 4.04201 4.06779 4.25803 4.51508 4.56349 4.64798 4.65811 4.85233 4.87528 5.01358 5.09881 5.22740 5.33136 5.40241 5.47345 5.53555 5.77386 5.78166 5.81304 5.90120 5.92325 6.07983 6.19246 6.21642 6.31702 6.35633 6.51218 6.72913 6.75280 6.99580 7.06617 7.28865 7.40554 7.50666 7.61390 7.73502 7.89516 8.10031 8.21979 8.37841 8.74028 8.86564 9.35263 10.04851 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.002920 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.837146 B = 9587.328250 C =10791.291681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.122 4.122 4 C -0.113 4.113 5 C -0.115 4.115 6 C -0.106 4.106 7 C 0.138 3.862 8 H 0.113 0.887 9 O -0.550 6.550 10 C 0.101 3.899 11 N -0.744 5.744 12 C 0.563 3.437 13 O -0.539 6.539 14 C -0.265 4.265 15 C -0.042 4.042 16 C -0.259 4.259 17 C -0.076 4.076 18 C -0.201 4.201 19 C 0.121 3.879 20 C -0.467 4.467 21 H 0.105 0.895 22 C 0.031 3.969 23 N -0.794 5.794 24 Si 1.070 2.930 25 H -0.275 1.275 26 H -0.274 1.274 27 H -0.273 1.273 28 C -0.108 4.108 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.376 0.624 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.396 0.604 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.298 0.702 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 13.336 -11.552 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.131 4.131 5 C -0.133 4.133 6 C -0.107 4.107 7 C 0.078 3.922 8 H 0.130 0.870 9 O -0.356 6.356 10 C -0.024 4.024 11 N -0.400 5.400 12 C 0.357 3.643 13 O -0.417 6.417 14 C -0.270 4.270 15 C -0.061 4.061 16 C -0.279 4.279 17 C -0.094 4.094 18 C -0.221 4.221 19 C 0.116 3.884 20 C -0.494 4.494 21 H 0.123 0.877 22 C -0.190 4.190 23 N -0.417 5.417 24 Si 0.894 3.106 25 H -0.199 1.199 26 H -0.200 1.200 27 H -0.198 1.198 28 C -0.126 4.126 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.224 0.776 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.231 0.769 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.112 0.888 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.627 12.964 -9.474 17.776 hybrid contribution 0.257 0.409 -1.908 1.968 sum -7.370 13.373 -11.382 19.044 Atomic orbital electron populations 1.20805 0.91066 1.02781 1.02533 1.19919 0.96172 0.93066 0.99362 1.21052 0.94300 0.97506 1.01109 1.21095 0.94313 0.97890 0.99803 1.20869 0.99846 0.92010 1.00561 1.20405 0.94392 0.95469 1.00425 1.21067 0.85956 0.93832 0.91325 0.86973 1.86612 1.31378 1.61998 1.55658 1.21758 0.97568 0.87761 0.95287 1.45901 1.60475 1.23620 1.09975 1.18398 0.78312 0.85272 0.82302 1.90680 1.57577 1.62658 1.30791 1.19376 1.13006 0.99415 0.95180 1.20742 0.95772 0.94358 0.95263 1.20250 1.11340 0.99458 0.96828 1.20749 0.97883 0.97604 0.93204 1.21250 1.04989 0.98967 0.96848 1.17507 0.88112 0.90567 0.92187 1.21167 1.38211 0.98312 0.91689 0.87749 1.27265 0.92045 0.94601 1.05138 1.70390 1.25945 1.12051 1.33336 0.83561 0.77949 0.75950 0.73190 1.19932 1.19953 1.19828 1.20891 0.93239 0.97959 1.00557 0.90986 0.91563 0.91429 0.86106 0.85890 0.86103 0.77587 0.91166 0.91788 0.76888 0.88994 0.88867 0.88872 0.87536 0.88810 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.09 -0.81 5.88 -104.62 -0.62 -1.43 16 3 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 4 C -0.11 -1.04 10.05 -39.58 -0.40 -1.44 16 5 C -0.11 -1.16 9.33 -39.58 -0.37 -1.52 16 6 C -0.11 -1.16 5.00 -104.62 -0.52 -1.69 16 7 C 0.14 1.60 3.30 -27.88 -0.09 1.51 16 8 H 0.11 1.25 8.05 -51.93 -0.42 0.83 16 9 O -0.55 -6.43 12.88 -35.23 -0.45 -6.89 16 10 C 0.10 1.51 5.32 -4.05 -0.02 1.49 16 11 N -0.74 -13.23 5.40 -61.38 -0.33 -13.56 16 12 C 0.56 13.13 7.73 -12.52 -0.10 13.03 16 13 O -0.54 -14.33 13.56 5.27 0.07 -14.26 16 14 C -0.26 -6.49 5.92 -104.36 -0.62 -7.11 16 15 C -0.04 -0.91 9.53 -39.22 -0.37 -1.28 16 16 C -0.26 -5.49 10.03 -39.37 -0.39 -5.89 16 17 C -0.08 -1.68 10.01 -39.60 -0.40 -2.08 16 18 C -0.20 -5.05 7.87 -38.88 -0.31 -5.36 16 19 C 0.12 3.24 5.17 -106.54 -0.55 2.69 16 20 C -0.47 -12.93 7.65 -37.81 -0.29 -13.22 16 21 H 0.10 3.02 5.92 -52.49 -0.31 2.71 16 22 C 0.03 0.81 5.04 -17.30 -0.09 0.73 16 23 N -0.79 -21.41 12.57 55.56 0.70 -20.71 16 24 Si 1.07 22.67 29.98 -169.99 -5.10 17.58 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 27 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 28 C -0.11 -1.13 9.34 -39.58 -0.37 -1.50 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 31 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 1.00 6.62 -52.49 -0.35 0.65 16 35 H 0.38 3.42 7.40 45.56 0.34 3.75 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.40 6.33 6.39 -40.82 -0.26 6.07 16 39 H 0.09 1.65 6.41 -52.49 -0.34 1.31 16 40 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.11 2.72 6.94 -52.49 -0.36 2.36 16 43 H 0.30 8.22 6.55 -40.82 -0.27 7.95 16 44 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 367.76 15.07 5.54 5.54 Total: -1.00 -31.69 367.76 -10.08 -41.77 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -4.99 Total: 15.55 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -5.53 Total: -25.02 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.37 Total: -34.27 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.38 Total: -21.14 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.10 Total: 17.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.69 -10.08 -41.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001445918814.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.614 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds