Wall clock time and date at job start Tue Mar 31 2020 14:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38256 * 120.00149 * 2 1 4 4 C 1.38218 * 119.99829 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00007 * 359.75083 * 4 3 2 6 6 C 1.38221 * 119.99768 * 0.50137 * 5 4 3 7 7 C 1.50702 * 119.99572 * 179.76996 * 6 5 4 8 8 H 1.09005 * 109.46862 * 204.73051 * 7 6 5 9 9 O 1.42894 * 109.47260 * 324.72804 * 7 6 5 10 10 C 1.52995 * 109.47299 * 84.73167 * 7 6 5 11 11 N 1.46494 * 109.47394 * 179.97438 * 10 7 6 12 12 C 1.34776 * 120.00009 * 179.97438 * 11 10 7 13 13 O 1.21609 * 120.00181 * 0.02562 * 12 11 10 14 14 C 1.47435 * 119.99851 * 180.02562 * 12 11 10 15 15 C 1.39235 * 120.28378 * 356.68142 * 14 12 11 16 16 C 1.38223 * 120.09183 * 180.28231 * 15 14 12 17 17 C 1.38824 * 120.67578 * 359.69536 * 16 15 14 18 18 C 1.37601 * 120.57302 * 0.02562 * 17 16 15 19 19 C 1.40712 * 119.87956 * 0.02562 * 18 17 16 20 20 C 1.40891 * 120.32906 * 179.97438 * 19 18 17 21 21 H 1.07992 * 120.00234 * 145.79747 * 20 19 18 22 22 C 1.40273 * 119.99571 * 325.79352 * 20 19 18 23 23 N 1.30635 * 120.00253 * 340.74281 * 22 20 19 24 24 Si 1.86798 * 119.99912 * 160.74547 * 22 20 19 25 25 H 1.48507 * 109.47415 * 179.97438 * 24 22 20 26 26 H 1.48498 * 109.47275 * 299.99863 * 24 22 20 27 27 H 1.48501 * 109.47305 * 59.99898 * 24 22 20 28 28 C 1.38216 * 119.99486 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46667 * 270.02330 * 1 2 3 30 30 H 1.09003 * 109.46742 * 30.01504 * 1 2 3 31 31 H 1.08990 * 109.47538 * 150.01992 * 1 2 3 32 32 H 1.07992 * 120.00014 * 0.02562 * 3 2 1 33 33 H 1.07999 * 119.99774 * 180.02562 * 4 3 2 34 34 H 1.07997 * 119.99812 * 180.27560 * 5 4 3 35 35 H 0.96703 * 114.00105 * 59.99829 * 9 7 6 36 36 H 1.09004 * 109.47250 * 59.99582 * 10 7 6 37 37 H 1.09005 * 109.47069 * 299.99758 * 10 7 6 38 38 H 0.96994 * 119.99831 * 359.97438 * 11 10 7 39 39 H 1.08001 * 119.94893 * 359.97438 * 15 14 12 40 40 H 1.07988 * 119.65914 * 179.72052 * 16 15 14 41 41 H 1.08002 * 119.71756 * 180.02562 * 17 16 15 42 42 H 1.07997 * 120.06577 * 180.02562 * 18 17 16 43 43 H 0.97003 * 120.00071 * 354.83739 * 23 22 20 44 44 H 1.07998 * 120.00107 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0063 6 6 3.5806 -1.1971 0.0010 7 6 4.3341 -2.5022 0.0020 8 1 3.7093 -3.2828 -0.4321 9 8 5.5282 -2.3634 -0.7703 10 6 4.6973 -2.8803 1.4393 11 7 5.4293 -4.1493 1.4404 12 6 5.8542 -4.6812 2.6036 13 8 5.6295 -4.1079 3.6523 14 6 6.5913 -5.9580 2.6046 15 6 6.7918 -6.6539 1.4154 16 6 7.4784 -7.8535 1.4217 17 6 7.9806 -8.3759 2.6059 18 6 7.8034 -7.7084 3.7960 19 6 7.1071 -6.4858 3.8171 20 6 6.9196 -5.7947 5.0305 21 1 6.9158 -4.7148 5.0418 22 6 6.7378 -6.5093 6.2238 23 7 6.3686 -7.7618 6.1853 24 14 7.0237 -5.6700 7.8679 25 1 6.7657 -6.6342 8.9675 26 1 8.4290 -5.1962 7.9441 27 1 6.1032 -4.5122 7.9993 28 6 2.1980 -1.1971 0.0005 29 1 -0.3632 0.0004 1.0277 30 1 -0.3633 0.8899 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6584 2.1326 0.0004 33 1 4.1205 2.1325 0.0010 34 1 5.3517 -0.0001 0.0112 35 1 6.1330 -1.6845 -0.4410 36 1 3.7864 -2.9862 2.0285 37 1 5.3222 -2.0997 1.8735 38 1 5.6081 -4.6067 0.6040 39 1 6.4060 -6.2582 0.4875 40 1 7.6260 -8.3897 0.4961 41 1 8.5151 -9.3143 2.5929 42 1 8.1979 -8.1221 4.7123 43 1 6.1476 -8.1765 5.3367 44 1 1.6579 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001445918814.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:48 Heat of formation + Delta-G solvation = -76.098760 kcal Electronic energy + Delta-G solvation = -26290.706636 eV Core-core repulsion = 22556.883842 eV Total energy + Delta-G solvation = -3733.822793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.10727 -40.51295 -38.92902 -38.09812 -35.96479 -35.09573 -33.65150 -32.73395 -31.87915 -31.23262 -29.11847 -27.78202 -27.08496 -25.05000 -23.70250 -23.14916 -22.70693 -21.66575 -21.01785 -19.98883 -18.53513 -18.15899 -17.16595 -17.09853 -16.65137 -16.41711 -16.07572 -15.92393 -15.65395 -15.55724 -15.35865 -15.02080 -14.72369 -14.51640 -14.37590 -14.04357 -13.93782 -13.82887 -13.39313 -13.13217 -13.01533 -12.91475 -12.70914 -12.60425 -12.50385 -12.17988 -12.02610 -11.95754 -11.88389 -11.51213 -11.23205 -10.96685 -10.39620 -10.06329 -9.78349 -9.61714 -9.56784 -9.49975 -9.11084 -6.46961 0.31497 0.39141 0.42707 0.90207 1.45930 1.61407 1.76203 2.23283 2.30258 2.31984 2.73553 2.76875 3.35373 3.55620 3.60387 3.78700 3.84246 3.99816 4.10308 4.20172 4.22053 4.27322 4.43601 4.46840 4.48513 4.60521 4.67451 4.80761 4.82786 4.84295 4.87743 4.95432 5.08682 5.13380 5.26679 5.42272 5.49154 5.52339 5.56140 5.64359 5.64806 5.70747 5.88694 5.95886 6.05687 6.19349 6.32885 6.57611 6.67713 6.84633 6.91169 7.57750 8.03747 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.002920 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.837146 B = 9587.328250 C =10791.291681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.127 4.127 4 C -0.120 4.120 5 C -0.128 4.128 6 C -0.122 4.122 7 C 0.156 3.844 8 H 0.120 0.880 9 O -0.557 6.557 10 C 0.103 3.897 11 N -0.722 5.722 12 C 0.557 3.443 13 O -0.580 6.580 14 C -0.283 4.283 15 C -0.041 4.041 16 C -0.244 4.244 17 C -0.072 4.072 18 C -0.226 4.226 19 C 0.095 3.905 20 C -0.511 4.511 21 H 0.080 0.920 22 C -0.003 4.003 23 N -0.817 5.817 24 Si 1.116 2.884 25 H -0.264 1.264 26 H -0.259 1.259 27 H -0.272 1.272 28 C -0.124 4.124 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.134 0.866 35 H 0.387 0.613 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.408 0.592 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.125 0.875 42 H 0.090 0.910 43 H 0.283 0.717 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.392 13.968 -14.091 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.138 4.138 5 C -0.146 4.146 6 C -0.123 4.123 7 C 0.097 3.903 8 H 0.138 0.862 9 O -0.364 6.364 10 C -0.022 4.022 11 N -0.376 5.376 12 C 0.350 3.650 13 O -0.462 6.462 14 C -0.288 4.288 15 C -0.060 4.060 16 C -0.263 4.263 17 C -0.090 4.090 18 C -0.245 4.245 19 C 0.091 3.909 20 C -0.539 4.539 21 H 0.098 0.902 22 C -0.218 4.218 23 N -0.441 5.441 24 Si 0.933 3.067 25 H -0.188 1.188 26 H -0.183 1.183 27 H -0.197 1.197 28 C -0.142 4.142 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.152 0.848 35 H 0.237 0.763 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.245 0.755 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.143 0.857 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.838 13.599 -12.082 19.808 hybrid contribution 0.311 0.246 -1.433 1.487 sum -7.526 13.846 -13.515 20.760 Atomic orbital electron populations 1.20844 0.89519 1.03761 1.02954 1.20251 0.97500 0.92951 0.98889 1.21406 0.94551 0.98319 1.00193 1.21421 0.94713 0.98493 0.99178 1.21136 1.00750 0.92130 1.00546 1.20377 0.94690 0.95274 1.01916 1.20840 0.86122 0.94661 0.88720 0.86222 1.86585 1.31615 1.62639 1.55596 1.21906 0.96415 0.85979 0.97862 1.45638 1.59075 1.24180 1.08740 1.18448 0.78296 0.85124 0.83099 1.90660 1.59123 1.63690 1.32687 1.19782 1.12880 1.00291 0.95802 1.21154 0.95056 0.94170 0.95611 1.20813 1.08684 0.98899 0.97917 1.21165 0.97004 0.98337 0.92509 1.21213 1.06258 0.99372 0.97654 1.17908 0.88359 0.91561 0.93038 1.21096 1.42171 0.97245 0.93356 0.90158 1.28476 0.90788 0.94614 1.07932 1.70501 1.28680 1.12822 1.32119 0.83027 0.78644 0.75193 0.69850 1.18791 1.18313 1.19723 1.21110 0.93326 0.98840 1.00964 0.90750 0.90140 0.90963 0.83981 0.83826 0.84831 0.76317 0.92351 0.92454 0.75467 0.84919 0.84576 0.85686 0.89200 0.90511 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 71.24 0.71 -0.72 16 2 C -0.10 -1.69 5.88 -19.86 -0.12 -1.81 16 3 C -0.13 -2.06 9.70 22.27 0.22 -1.84 16 4 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 5 C -0.13 -2.40 9.33 22.27 0.21 -2.19 16 6 C -0.12 -2.53 5.00 -19.86 -0.10 -2.63 16 7 C 0.16 3.42 3.30 29.85 0.10 3.51 16 8 H 0.12 2.44 8.05 -2.38 -0.02 2.42 16 9 O -0.56 -11.86 12.88 -148.98 -1.92 -13.78 16 10 C 0.10 3.03 5.32 86.38 0.46 3.49 16 11 N -0.72 -25.05 5.40 -466.37 -2.52 -27.57 16 12 C 0.56 26.37 7.73 86.67 0.67 27.04 16 13 O -0.58 -32.23 13.56 -4.06 -0.06 -32.29 16 14 C -0.28 -13.89 5.92 -19.70 -0.12 -14.01 16 15 C -0.04 -1.65 9.53 22.51 0.21 -1.44 16 16 C -0.24 -9.40 10.03 22.41 0.22 -9.17 16 17 C -0.07 -3.05 10.01 22.26 0.22 -2.83 16 18 C -0.23 -11.54 7.87 22.72 0.18 -11.37 16 19 C 0.10 5.29 5.17 -21.11 -0.11 5.18 16 20 C -0.51 -29.90 7.65 23.41 0.18 -29.72 16 21 H 0.08 4.97 5.92 -2.91 -0.02 4.95 16 22 C 0.00 -0.16 5.04 85.37 0.43 0.27 16 23 N -0.82 -46.17 12.57 21.88 0.28 -45.89 16 24 Si 1.12 47.59 29.98 68.60 2.06 49.65 16 25 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 26 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 C -0.12 -2.48 9.34 22.27 0.21 -2.27 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 0.76 8.09 -2.39 -0.02 0.75 16 31 H 0.07 0.82 8.08 -2.39 -0.02 0.81 16 32 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 34 H 0.13 2.02 6.62 -2.91 -0.02 2.00 16 35 H 0.39 6.31 7.40 -74.06 -0.55 5.77 16 36 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.41 12.07 6.39 -92.71 -0.59 11.48 16 39 H 0.13 4.16 6.41 -2.91 -0.02 4.14 16 40 H 0.14 4.16 8.06 -2.92 -0.02 4.13 16 41 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 42 H 0.09 4.80 6.94 -2.91 -0.02 4.78 16 43 H 0.28 16.44 6.55 -92.71 -0.61 15.83 16 44 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -72.48 367.76 1.71 -70.77 By element: Atomic # 1 Polarization: 41.33 SS G_CDS: 0.06 Total: 41.39 kcal Atomic # 6 Polarization: -46.08 SS G_CDS: 3.80 Total: -42.27 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -2.24 Total: -73.46 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -1.97 Total: -46.07 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.06 Total: 49.65 kcal Total: -72.48 1.71 -70.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001445918814.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.328 kcal (2) G-P(sol) polarization free energy of solvation -72.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds