Wall clock time and date at job start Tue Mar 31 2020 14:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38279 * 119.92842 * 2 1 4 4 C 1.38111 * 120.07127 * 179.97438 * 3 2 1 5 5 C 1.38892 * 119.92688 * 0.02562 * 4 3 2 6 6 N 1.39840 * 120.06991 * 180.02562 * 5 4 3 7 7 C 1.46498 * 120.00098 * 187.27817 * 6 5 4 8 8 C 1.50704 * 109.46797 * 275.57027 * 7 6 5 9 9 H 1.08000 * 119.99973 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99969 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00257 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00029 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46785 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.46916 * 119.99756 * 12 10 8 15 15 H 1.48491 * 109.47400 * 240.00004 * 12 10 8 16 16 C 1.34779 * 120.00370 * 7.26911 * 6 5 4 17 17 O 1.21568 * 119.99700 * 5.78968 * 16 6 5 18 18 C 1.47826 * 120.00459 * 185.78874 * 16 6 5 19 19 C 1.39540 * 120.11612 * 305.98018 * 18 16 6 20 20 C 1.38455 * 119.79398 * 180.02562 * 19 18 16 21 21 O 1.35904 * 119.98626 * 179.97438 * 20 19 18 22 22 C 1.38861 * 120.02836 * 359.97438 * 20 19 18 23 23 C 1.38247 * 120.24131 * 359.77115 * 22 20 19 24 24 C 1.38004 * 120.20660 * 0.50649 * 23 22 20 25 25 C 1.50702 * 120.01623 * 179.74610 * 24 23 22 26 26 C 1.38886 * 119.85408 * 0.27072 * 5 4 3 27 27 C 1.38108 * 119.92704 * 359.42892 * 26 5 4 28 28 H 1.09002 * 109.47020 * 90.00178 * 1 2 3 29 29 H 1.08999 * 109.47389 * 210.00309 * 1 2 3 30 30 H 1.08997 * 109.47053 * 330.00450 * 1 2 3 31 31 H 1.08002 * 119.96755 * 359.97079 * 3 2 1 32 32 H 1.08000 * 120.03279 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47573 * 35.56636 * 7 6 5 34 34 H 1.09001 * 109.47713 * 155.57137 * 7 6 5 35 35 H 0.96993 * 120.00633 * 180.02562 * 11 10 8 36 36 H 1.08003 * 120.10826 * 0.02562 * 19 18 16 37 37 H 0.96700 * 113.99761 * 90.00726 * 21 20 19 38 38 H 1.07992 * 119.87653 * 180.02562 * 22 20 19 39 39 H 1.08001 * 119.89902 * 180.25741 * 23 22 20 40 40 H 1.08994 * 109.47276 * 264.24704 * 25 24 23 41 41 H 1.09002 * 109.46984 * 144.24442 * 25 24 23 42 42 H 1.09001 * 109.47295 * 24.25172 * 25 24 23 43 43 H 1.08000 * 120.03080 * 179.72669 * 26 5 4 44 44 H 1.08000 * 119.96148 * 180.29622 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2018 0.0005 5 6 4.2740 -0.0002 0.0005 6 7 5.6724 -0.0002 0.0016 7 6 6.4050 -1.2586 -0.1591 8 6 6.5357 -1.9382 1.1796 9 1 6.1154 -1.4785 2.0619 10 6 7.1918 -3.1469 1.2780 11 7 7.7031 -3.7070 0.2036 12 14 7.3544 -3.9890 2.9376 13 1 6.6980 -3.1595 3.9799 14 1 6.7015 -5.3216 2.8824 15 1 8.7921 -4.1554 3.2695 16 6 6.3462 1.1576 0.1503 17 8 5.7429 2.1857 0.3886 18 6 7.8189 1.1772 0.0238 19 6 8.5996 0.3163 0.7962 20 6 9.9784 0.3407 0.6727 21 8 10.7425 -0.4957 1.4235 22 6 10.5809 1.2194 -0.2178 23 6 9.8085 2.0692 -0.9875 24 6 8.4337 2.0572 -0.8683 25 6 7.5962 2.9894 -1.7053 26 6 3.5780 -1.2020 -0.0057 27 6 2.1969 -1.1985 0.0001 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6552 2.1327 -0.0005 32 1 4.1163 2.1382 0.0010 33 1 5.8633 -1.9093 -0.8455 34 1 7.3973 -1.0527 -0.5604 35 1 8.1643 -4.5574 0.2727 36 1 8.1298 -0.3670 1.4882 37 1 10.9176 -1.3499 1.0055 38 1 11.6565 1.2361 -0.3125 39 1 10.2827 2.7475 -1.6814 40 1 7.3662 3.8864 -1.1303 41 1 6.6688 2.4907 -1.9870 42 1 8.1477 3.2654 -2.6040 43 1 4.1162 -2.1383 -0.0102 44 1 1.6551 -2.1328 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542615282.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:10 Heat of formation + Delta-G solvation = -19.168371 kcal Electronic energy + Delta-G solvation = -27846.679083 eV Core-core repulsion = 24115.324977 eV Total energy + Delta-G solvation = -3731.354106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58548 -39.15983 -37.92281 -36.35164 -35.50350 -32.96708 -31.83172 -31.47556 -30.43505 -30.34270 -27.67340 -26.53531 -25.72312 -23.63727 -23.23573 -21.91759 -21.51613 -20.71043 -19.41696 -17.66331 -16.96849 -16.74091 -16.16273 -15.66376 -15.42926 -15.08261 -14.71627 -14.52109 -14.11865 -13.99928 -13.78054 -13.39404 -13.27271 -13.20989 -12.93154 -12.90010 -12.56193 -12.34006 -11.92201 -11.81932 -11.65666 -11.54619 -11.40661 -11.28919 -11.12222 -11.00284 -10.84751 -10.54607 -10.35969 -10.22817 -10.04346 -9.13821 -8.91078 -8.77466 -8.43914 -8.34290 -8.11636 -7.13574 -6.34610 -4.43615 1.27183 1.63442 1.86345 2.00698 3.13899 3.14000 3.23694 3.29525 3.55774 3.97901 4.20968 4.44226 4.59569 4.94008 4.96274 5.06270 5.27392 5.30906 5.34531 5.43778 5.57806 5.59982 5.67696 5.80295 5.86736 5.91233 5.97406 6.03741 6.11201 6.17600 6.24042 6.26226 6.35629 6.52005 6.56094 6.73829 6.76750 6.83831 6.91555 6.98027 7.03758 7.10664 7.16354 7.29319 7.57970 7.78116 7.81815 8.03788 8.05066 8.57888 8.71328 9.23762 10.70508 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009666 B = 0.005816 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.930369 B = 4813.527935 C = 7241.033671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.130 4.130 3 C -0.108 4.108 4 C -0.171 4.171 5 C 0.165 3.835 6 N -0.528 5.528 7 C 0.224 3.776 8 C -0.541 4.541 9 H 0.065 0.935 10 C 0.073 3.927 11 N -0.884 5.884 12 Si 0.894 3.106 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.279 1.279 16 C 0.564 3.436 17 O -0.534 6.534 18 C -0.110 4.110 19 C -0.082 4.082 20 C 0.092 3.908 21 O -0.498 6.498 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.054 4.054 25 C -0.110 4.110 26 C -0.136 4.136 27 C -0.104 4.104 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.114 0.886 32 H 0.172 0.828 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.267 0.733 36 H 0.166 0.834 37 H 0.392 0.608 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.141 0.859 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.343 6.682 -4.160 7.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.131 4.131 3 C -0.126 4.126 4 C -0.190 4.190 5 C 0.069 3.931 6 N -0.246 5.246 7 C 0.105 3.895 8 C -0.579 4.579 9 H 0.083 0.917 10 C -0.132 4.132 11 N -0.521 5.521 12 Si 0.720 3.280 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.205 1.205 16 C 0.355 3.645 17 O -0.414 6.414 18 C -0.113 4.113 19 C -0.100 4.100 20 C 0.047 3.953 21 O -0.309 6.309 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.055 4.055 25 C -0.167 4.167 26 C -0.157 4.157 27 C -0.123 4.123 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.132 0.868 32 H 0.188 0.812 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.183 0.817 37 H 0.248 0.752 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.158 0.842 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.457 7.476 -3.711 8.472 hybrid contribution 0.284 -1.368 0.607 1.524 sum -1.173 6.107 -3.104 6.950 Atomic orbital electron populations 1.20664 0.92085 1.01923 1.01413 1.19779 0.95427 0.93507 1.04381 1.20859 0.93891 0.96811 1.01064 1.22465 0.94299 0.99801 1.02451 1.18005 0.82538 0.94271 0.98268 1.45926 1.04190 1.09901 1.64577 1.19829 0.92658 0.78625 0.98370 1.21399 1.37205 1.05628 0.93682 0.91662 1.24889 0.94702 0.96565 0.97014 1.69933 1.36008 1.18034 1.28106 0.86486 0.78233 0.79527 0.83708 1.19468 1.20701 1.20462 1.18394 0.87176 0.82785 0.76173 1.90418 1.68252 1.33862 1.48911 1.19472 0.92601 0.98948 1.00259 1.22351 0.92937 0.96323 0.98424 1.18306 0.89191 0.94269 0.93489 1.84759 1.70881 1.29737 1.45498 1.21483 1.00191 0.97286 0.95614 1.20680 0.92442 1.00267 1.00699 1.19827 0.93954 0.95589 0.96094 1.20773 0.99002 0.98653 0.98271 1.21136 0.93980 0.97822 1.02735 1.20740 0.93489 0.97057 1.01006 0.92064 0.92205 0.92281 0.86804 0.81165 0.93853 0.92930 0.92315 0.81695 0.75227 0.85675 0.85573 0.90466 0.91686 0.91789 0.84160 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 10.01 36.01 0.36 -0.88 16 2 C -0.13 -2.05 5.88 -104.59 -0.62 -2.66 16 3 C -0.11 -1.79 9.69 -39.61 -0.38 -2.18 16 4 C -0.17 -3.30 8.98 -39.39 -0.35 -3.65 16 5 C 0.16 3.43 6.46 -83.72 -0.54 2.89 16 6 N -0.53 -11.41 2.69 -115.80 -0.31 -11.72 16 7 C 0.22 5.14 4.03 -5.19 -0.02 5.12 16 8 C -0.54 -13.22 6.45 -34.44 -0.22 -13.44 16 9 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 10 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.88 -22.40 13.29 55.43 0.74 -21.66 16 12 Si 0.89 19.69 29.54 -169.99 -5.02 14.67 16 13 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 16 C 0.56 11.86 6.06 -12.34 -0.07 11.78 16 17 O -0.53 -11.49 12.64 5.31 0.07 -11.43 16 18 C -0.11 -2.13 4.76 -104.99 -0.50 -2.63 16 19 C -0.08 -1.63 7.59 -39.02 -0.30 -1.92 16 20 C 0.09 1.62 6.70 -39.27 -0.26 1.35 16 21 O -0.50 -8.36 13.50 -19.44 -0.26 -8.62 16 22 C -0.13 -1.89 9.98 -39.35 -0.39 -2.29 16 23 C -0.12 -1.76 9.66 -39.66 -0.38 -2.14 16 24 C -0.05 -0.89 5.91 -104.21 -0.62 -1.50 16 25 C -0.11 -1.58 8.98 36.01 0.32 -1.25 16 26 C -0.14 -2.69 9.02 -39.39 -0.36 -3.05 16 27 C -0.10 -1.77 9.69 -39.61 -0.38 -2.15 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 32 H 0.17 3.43 4.70 -55.32 -0.26 3.17 16 33 H 0.04 1.05 6.86 -51.93 -0.36 0.69 16 34 H 0.05 1.24 5.60 -51.93 -0.29 0.95 16 35 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 36 H 0.17 3.67 5.38 -52.48 -0.28 3.39 16 37 H 0.39 5.28 9.06 45.56 0.41 5.70 16 38 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.02 7.17 -51.93 -0.37 0.64 16 42 H 0.06 0.73 8.05 -51.93 -0.42 0.31 16 43 H 0.14 2.95 6.14 -52.49 -0.32 2.62 16 44 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 362.05 15.07 5.46 5.46 Total: -1.00 -27.68 362.05 -8.96 -36.64 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -4.81 Total: 13.58 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -4.81 Total: -16.92 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.43 Total: -33.38 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.20 Total: -20.05 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.68 -8.96 -36.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542615282.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.472 kcal (2) G-P(sol) polarization free energy of solvation -27.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds