Wall clock time and date at job start Tue Mar 31 2020 14:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38279 * 119.92842 * 2 1 4 4 C 1.38111 * 120.07127 * 179.97438 * 3 2 1 5 5 C 1.38892 * 119.92688 * 0.02562 * 4 3 2 6 6 N 1.39840 * 120.06991 * 180.02562 * 5 4 3 7 7 C 1.46498 * 120.00098 * 187.27817 * 6 5 4 8 8 C 1.50704 * 109.46797 * 275.57027 * 7 6 5 9 9 H 1.08000 * 119.99973 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99969 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00257 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00029 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46785 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.46916 * 119.99756 * 12 10 8 15 15 H 1.48491 * 109.47400 * 240.00004 * 12 10 8 16 16 C 1.34779 * 120.00370 * 7.26911 * 6 5 4 17 17 O 1.21568 * 119.99700 * 5.78968 * 16 6 5 18 18 C 1.47826 * 120.00459 * 185.78874 * 16 6 5 19 19 C 1.39540 * 120.11612 * 305.98018 * 18 16 6 20 20 C 1.38455 * 119.79398 * 180.02562 * 19 18 16 21 21 O 1.35904 * 119.98626 * 179.97438 * 20 19 18 22 22 C 1.38861 * 120.02836 * 359.97438 * 20 19 18 23 23 C 1.38247 * 120.24131 * 359.77115 * 22 20 19 24 24 C 1.38004 * 120.20660 * 0.50649 * 23 22 20 25 25 C 1.50702 * 120.01623 * 179.74610 * 24 23 22 26 26 C 1.38886 * 119.85408 * 0.27072 * 5 4 3 27 27 C 1.38108 * 119.92704 * 359.42892 * 26 5 4 28 28 H 1.09002 * 109.47020 * 90.00178 * 1 2 3 29 29 H 1.08999 * 109.47389 * 210.00309 * 1 2 3 30 30 H 1.08997 * 109.47053 * 330.00450 * 1 2 3 31 31 H 1.08002 * 119.96755 * 359.97079 * 3 2 1 32 32 H 1.08000 * 120.03279 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47573 * 35.56636 * 7 6 5 34 34 H 1.09001 * 109.47713 * 155.57137 * 7 6 5 35 35 H 0.96993 * 120.00633 * 180.02562 * 11 10 8 36 36 H 1.08003 * 120.10826 * 0.02562 * 19 18 16 37 37 H 0.96700 * 113.99761 * 90.00726 * 21 20 19 38 38 H 1.07992 * 119.87653 * 180.02562 * 22 20 19 39 39 H 1.08001 * 119.89902 * 180.25741 * 23 22 20 40 40 H 1.08994 * 109.47276 * 264.24704 * 25 24 23 41 41 H 1.09002 * 109.46984 * 144.24442 * 25 24 23 42 42 H 1.09001 * 109.47295 * 24.25172 * 25 24 23 43 43 H 1.08000 * 120.03080 * 179.72669 * 26 5 4 44 44 H 1.08000 * 119.96148 * 180.29622 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2018 0.0005 5 6 4.2740 -0.0002 0.0005 6 7 5.6724 -0.0002 0.0016 7 6 6.4050 -1.2586 -0.1591 8 6 6.5357 -1.9382 1.1796 9 1 6.1154 -1.4785 2.0619 10 6 7.1918 -3.1469 1.2780 11 7 7.7031 -3.7070 0.2036 12 14 7.3544 -3.9890 2.9376 13 1 6.6980 -3.1595 3.9799 14 1 6.7015 -5.3216 2.8824 15 1 8.7921 -4.1554 3.2695 16 6 6.3462 1.1576 0.1503 17 8 5.7429 2.1857 0.3886 18 6 7.8189 1.1772 0.0238 19 6 8.5996 0.3163 0.7962 20 6 9.9784 0.3407 0.6727 21 8 10.7425 -0.4957 1.4235 22 6 10.5809 1.2194 -0.2178 23 6 9.8085 2.0692 -0.9875 24 6 8.4337 2.0572 -0.8683 25 6 7.5962 2.9894 -1.7053 26 6 3.5780 -1.2020 -0.0057 27 6 2.1969 -1.1985 0.0001 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6552 2.1327 -0.0005 32 1 4.1163 2.1382 0.0010 33 1 5.8633 -1.9093 -0.8455 34 1 7.3973 -1.0527 -0.5604 35 1 8.1643 -4.5574 0.2727 36 1 8.1298 -0.3670 1.4882 37 1 10.9176 -1.3499 1.0055 38 1 11.6565 1.2361 -0.3125 39 1 10.2827 2.7475 -1.6814 40 1 7.3662 3.8864 -1.1303 41 1 6.6688 2.4907 -1.9870 42 1 8.1477 3.2654 -2.6040 43 1 4.1162 -2.1383 -0.0102 44 1 1.6551 -2.1328 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542615282.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:09 Heat of formation + Delta-G solvation = -34.005993 kcal Electronic energy + Delta-G solvation = -27847.322491 eV Core-core repulsion = 24115.324977 eV Total energy + Delta-G solvation = -3731.997514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.11241 -40.51045 -39.35174 -37.66431 -37.16152 -34.79341 -33.23619 -32.72593 -31.79471 -31.73823 -29.48919 -27.80849 -26.98166 -25.38388 -24.65907 -23.39005 -22.87779 -22.06759 -20.87329 -19.07947 -18.83009 -18.35922 -17.72834 -17.10097 -16.72691 -16.51437 -16.38117 -16.00102 -15.64583 -15.37441 -15.17299 -14.65914 -14.54103 -14.47863 -14.43235 -14.37138 -14.09292 -13.66830 -13.35143 -13.25711 -12.97134 -12.92168 -12.81971 -12.71734 -12.59187 -12.49057 -12.39516 -12.20438 -11.92399 -11.87440 -11.53189 -10.79161 -10.68183 -10.41391 -9.84640 -9.78814 -9.41889 -8.69214 -8.25705 -6.41721 -0.08759 0.31343 0.44823 0.55883 1.34295 1.38959 1.47599 1.63708 2.00857 2.34670 2.64471 2.98224 3.01158 3.26777 3.50488 3.90673 3.99473 4.07621 4.11090 4.20784 4.28272 4.41285 4.48250 4.51119 4.61619 4.70101 4.73420 4.79583 4.89192 4.91940 4.94141 5.00815 5.06950 5.13371 5.19441 5.23927 5.27545 5.43084 5.45791 5.54439 5.56308 5.61416 5.73889 5.81346 5.84092 5.90520 6.28632 6.37375 6.67286 6.81084 7.03744 7.27679 8.77523 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009666 B = 0.005816 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.930369 B = 4813.527935 C = 7241.033671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.120 4.120 3 C -0.106 4.106 4 C -0.183 4.183 5 C 0.130 3.870 6 N -0.535 5.535 7 C 0.247 3.753 8 C -0.539 4.539 9 H 0.042 0.958 10 C 0.041 3.959 11 N -0.905 5.905 12 Si 0.945 3.055 13 H -0.281 1.281 14 H -0.275 1.275 15 H -0.269 1.269 16 C 0.558 3.442 17 O -0.548 6.548 18 C -0.135 4.135 19 C -0.109 4.109 20 C 0.080 3.920 21 O -0.507 6.507 22 C -0.114 4.114 23 C -0.107 4.107 24 C -0.060 4.060 25 C -0.106 4.106 26 C -0.155 4.155 27 C -0.105 4.105 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.145 0.855 32 H 0.161 0.839 33 H 0.023 0.977 34 H 0.044 0.956 35 H 0.272 0.728 36 H 0.130 0.870 37 H 0.403 0.597 38 H 0.162 0.838 39 H 0.173 0.827 40 H 0.079 0.921 41 H 0.042 0.958 42 H 0.101 0.899 43 H 0.117 0.883 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.481 7.808 -4.989 9.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.121 4.121 3 C -0.124 4.124 4 C -0.203 4.203 5 C 0.035 3.965 6 N -0.253 5.253 7 C 0.127 3.873 8 C -0.577 4.577 9 H 0.061 0.939 10 C -0.161 4.161 11 N -0.543 5.543 12 Si 0.771 3.229 13 H -0.206 1.206 14 H -0.201 1.201 15 H -0.194 1.194 16 C 0.350 3.650 17 O -0.430 6.430 18 C -0.138 4.138 19 C -0.128 4.128 20 C 0.036 3.964 21 O -0.319 6.319 22 C -0.133 4.133 23 C -0.125 4.125 24 C -0.061 4.061 25 C -0.162 4.162 26 C -0.176 4.176 27 C -0.123 4.123 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.163 0.837 32 H 0.178 0.822 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.148 0.852 37 H 0.261 0.739 38 H 0.179 0.821 39 H 0.191 0.809 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.119 0.881 43 H 0.135 0.865 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.607 8.593 -4.546 9.853 hybrid contribution 0.264 -1.672 0.847 1.893 sum -1.343 6.921 -3.698 7.961 Atomic orbital electron populations 1.20741 0.88552 1.03479 1.03026 1.20254 0.97850 0.92379 1.01586 1.21226 0.92801 0.98710 0.99669 1.22457 0.95693 0.98696 1.03447 1.18342 0.82344 0.95407 1.00411 1.45897 1.04807 1.09548 1.65092 1.19385 0.91898 0.78936 0.97053 1.21303 1.37082 1.05903 0.93432 0.93947 1.25394 0.94377 0.96853 0.99486 1.69985 1.36518 1.18465 1.29325 0.85700 0.78465 0.78462 0.80293 1.20633 1.20092 1.19446 1.18774 0.88149 0.82397 0.75705 1.90387 1.68877 1.33988 1.49702 1.19535 0.91492 1.00780 1.02023 1.22101 0.94397 0.97061 0.99263 1.18481 0.88373 0.95233 0.94349 1.84715 1.70472 1.30529 1.46193 1.21842 1.02028 0.95576 0.93819 1.21184 0.91227 0.99768 1.00280 1.20204 0.95459 0.95041 0.95418 1.20790 0.98246 0.97807 0.99398 1.21092 0.95428 0.96533 1.04505 1.21069 0.92301 0.98990 0.99937 0.90241 0.90868 0.90614 0.83743 0.82246 0.95908 0.93845 0.91897 0.85217 0.73878 0.82078 0.80944 0.90287 0.93905 0.88058 0.86510 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 10.01 71.24 0.71 -1.33 16 2 C -0.12 -3.55 5.88 -19.84 -0.12 -3.67 16 3 C -0.11 -3.41 9.69 22.25 0.22 -3.19 16 4 C -0.18 -7.33 8.98 22.40 0.20 -7.13 16 5 C 0.13 5.73 6.46 38.18 0.25 5.98 16 6 N -0.53 -24.93 2.69 -638.54 -1.72 -26.65 16 7 C 0.25 12.23 4.03 85.63 0.35 12.58 16 8 C -0.54 -28.16 6.45 25.60 0.17 -28.00 16 9 H 0.04 2.37 7.81 -2.91 -0.02 2.34 16 10 C 0.04 2.11 5.46 84.66 0.46 2.57 16 11 N -0.90 -47.34 13.29 21.45 0.28 -47.06 16 12 Si 0.95 41.61 29.54 68.60 2.03 43.64 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 14 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 16 C 0.56 25.02 6.06 86.78 0.53 25.55 16 17 O -0.55 -24.92 12.64 -3.93 -0.05 -24.97 16 18 C -0.14 -5.48 4.76 -20.10 -0.10 -5.58 16 19 C -0.11 -4.58 7.59 22.64 0.17 -4.41 16 20 C 0.08 2.82 6.70 22.47 0.15 2.97 16 21 O -0.51 -17.05 13.50 -92.47 -1.25 -18.30 16 22 C -0.11 -3.11 9.98 22.42 0.22 -2.89 16 23 C -0.11 -2.72 9.66 22.22 0.21 -2.51 16 24 C -0.06 -1.94 5.91 -19.60 -0.12 -2.06 16 25 C -0.11 -2.90 8.98 71.24 0.64 -2.26 16 26 C -0.16 -6.45 9.02 22.39 0.20 -6.25 16 27 C -0.10 -3.50 9.69 22.25 0.22 -3.28 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 30 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 31 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 32 H 0.16 6.72 4.70 -47.73 -0.22 6.50 16 33 H 0.02 1.20 6.86 -2.39 -0.02 1.19 16 34 H 0.04 2.22 5.60 -2.39 -0.01 2.21 16 35 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 36 H 0.13 6.29 5.38 -2.91 -0.02 6.28 16 37 H 0.40 10.96 9.06 -74.06 -0.67 10.29 16 38 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 39 H 0.17 2.83 8.06 -2.91 -0.02 2.80 16 40 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.04 1.35 7.17 -2.39 -0.02 1.34 16 42 H 0.10 1.97 8.05 -2.39 -0.02 1.95 16 43 H 0.12 5.32 6.14 -2.91 -0.02 5.30 16 44 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -64.30 362.05 3.82 -60.47 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: 0.16 Total: 35.77 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 4.37 Total: -22.91 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -1.43 Total: -73.70 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -1.30 Total: -43.27 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -64.30 3.82 -60.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542615282.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.468 kcal (2) G-P(sol) polarization free energy of solvation -64.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds