Wall clock time and date at job start Tue Mar 31 2020 13:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38144 * 120.02486 * 2 1 4 4 C 1.38262 * 120.05236 * 179.70579 * 3 2 1 5 5 C 1.38260 * 120.11532 * 0.29176 * 4 3 2 6 6 C 1.38146 * 120.05438 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.02799 * 180.02562 * 6 5 4 8 8 C 1.38729 * 119.94282 * 0.02562 * 6 5 4 9 9 O 1.35901 * 120.05483 * 180.02562 * 8 6 5 10 10 C 1.42900 * 117.00259 * 89.99700 * 9 8 6 11 11 C 1.50693 * 109.47465 * 179.97438 * 10 9 8 12 12 O 1.21289 * 119.99859 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00380 * 180.02562 * 11 10 9 14 14 C 1.39240 * 120.00040 * 175.71258 * 13 11 10 15 15 C 1.39483 * 119.82991 * 215.01306 * 14 13 11 16 16 C 1.36369 * 120.16980 * 179.75969 * 15 14 13 17 17 C 1.40871 * 119.82596 * 0.51349 * 16 15 14 18 18 C 1.41156 * 120.16391 * 179.72158 * 17 16 15 19 19 H 1.07997 * 119.99741 * 214.79825 * 18 17 16 20 20 C 1.39905 * 119.99953 * 34.80167 * 18 17 16 21 21 N 1.30863 * 120.00419 * 355.55721 * 20 18 17 22 22 Si 1.86803 * 119.99953 * 175.56127 * 20 18 17 23 23 H 1.48503 * 109.47326 * 59.99422 * 22 20 18 24 24 H 1.48499 * 109.47271 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47018 * 300.00032 * 22 20 18 26 26 C 1.40863 * 119.67490 * 359.73791 * 17 16 15 27 27 C 1.36379 * 119.82505 * 0.02562 * 26 17 16 28 28 H 1.08995 * 109.47238 * 90.00791 * 1 2 3 29 29 H 1.09011 * 109.46913 * 210.00400 * 1 2 3 30 30 H 1.08998 * 109.47469 * 330.00155 * 1 2 3 31 31 H 1.08000 * 119.97088 * 359.96936 * 3 2 1 32 32 H 1.08005 * 119.94138 * 180.26897 * 4 3 2 33 33 H 1.07997 * 119.97324 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.46578 * 90.00223 * 7 6 5 35 35 H 1.08996 * 109.46915 * 210.00054 * 7 6 5 36 36 H 1.08996 * 109.46972 * 330.00528 * 7 6 5 37 37 H 1.09003 * 109.47119 * 300.00319 * 10 9 8 38 38 H 1.09002 * 109.47310 * 60.00037 * 10 9 8 39 39 H 0.96997 * 119.99823 * 355.70410 * 13 11 10 40 40 H 1.08004 * 119.91755 * 0.02562 * 15 14 13 41 41 H 1.08005 * 120.08932 * 180.25074 * 16 15 14 42 42 H 0.96993 * 120.00653 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.08997 * 179.97438 * 26 17 16 44 44 H 1.08006 * 119.91548 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1961 0.0000 4 6 3.5809 1.1967 0.0061 5 6 4.2752 0.0011 0.0062 6 6 3.5886 -1.1976 0.0007 7 6 4.3460 -2.5005 0.0013 8 6 2.2013 -1.2010 -0.0055 9 8 1.5236 -2.3790 -0.0104 10 6 1.1944 -2.9435 1.2604 11 6 0.4497 -4.2377 1.0576 12 8 0.2235 -4.6377 -0.0649 13 7 0.0350 -4.9508 2.1234 14 6 -0.7299 -6.0994 1.9376 15 6 -1.7283 -6.4241 2.8559 16 6 -2.4848 -7.5447 2.6781 17 6 -2.2485 -8.3810 1.5694 18 6 -3.0234 -9.5458 1.3817 19 1 -2.5735 -10.4309 0.9567 20 6 -4.3742 -9.5537 1.7460 21 7 -4.8977 -8.5119 2.3403 22 14 -5.4304 -11.0513 1.3843 23 1 -4.8646 -12.2357 2.0788 24 1 -6.8140 -10.8094 1.8665 25 1 -5.4522 -11.2997 -0.0797 26 6 -1.2349 -8.0493 0.6492 27 6 -0.4898 -6.9227 0.8377 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5140 30 1 -0.3634 0.8900 0.5138 31 1 1.6582 2.1313 -0.0005 32 1 4.1195 2.1329 0.0105 33 1 5.3551 0.0043 0.0114 34 1 4.5239 -2.8167 1.0292 35 1 3.7614 -3.2608 -0.5167 36 1 5.3003 -2.3663 -0.5079 37 1 2.1095 -3.1343 1.8212 38 1 0.5666 -2.2467 1.8159 39 1 0.2695 -4.6640 3.0198 40 1 -1.9057 -5.7841 3.7076 41 1 -3.2603 -7.7927 3.3878 42 1 -5.8341 -8.5174 2.5932 43 1 -1.0477 -8.6859 -0.2029 44 1 0.2881 -6.6673 0.1333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008126317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:39 Heat of formation + Delta-G solvation = -30.412065 kcal Electronic energy + Delta-G solvation = -26023.247909 eV Core-core repulsion = 22291.406239 eV Total energy + Delta-G solvation = -3731.841670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.55240 -39.54415 -37.62684 -36.86158 -34.44009 -33.80954 -32.96425 -31.42786 -29.76132 -29.45414 -28.23961 -26.85889 -26.74447 -24.69077 -22.11677 -21.63083 -21.11069 -20.84928 -19.75160 -17.96784 -17.41142 -17.15063 -16.78046 -16.10913 -15.61449 -15.19301 -15.08453 -14.96897 -14.19885 -13.98428 -13.78738 -13.58109 -13.30989 -13.20993 -12.92354 -12.88453 -12.79634 -12.60461 -12.13569 -12.11063 -11.78006 -11.72228 -11.54427 -11.40033 -11.37490 -11.13596 -11.00825 -10.73547 -10.06231 -10.01955 -9.50340 -9.44960 -9.12506 -8.88959 -8.83409 -8.73497 -7.56058 -6.88671 -6.62591 -4.35292 0.93254 1.07763 2.50954 2.90768 3.01166 3.07938 3.09413 3.11949 3.32101 3.49698 3.97458 4.11726 4.53792 4.57987 4.68734 4.70868 4.91304 4.99785 5.01457 5.05431 5.17751 5.27234 5.35754 5.42747 5.51527 5.56763 5.59929 5.64367 5.91443 6.06404 6.17265 6.19588 6.21523 6.35035 6.43258 6.51592 6.71963 6.89373 7.05423 7.18398 7.27320 7.37660 7.62591 7.71957 7.85854 8.05116 8.21915 8.30498 8.60433 8.70309 8.91832 8.98428 10.28470 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.030643 B = 0.002175 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.532480 B =12868.921627 C =13245.921371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.117 4.117 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.095 4.095 7 C -0.117 4.117 8 C 0.091 3.909 9 O -0.303 6.303 10 C 0.051 3.949 11 C 0.499 3.501 12 O -0.507 6.507 13 N -0.649 5.649 14 C 0.003 3.997 15 C -0.119 4.119 16 C -0.142 4.142 17 C 0.100 3.900 18 C -0.460 4.460 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.812 5.812 22 Si 0.916 3.084 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.205 4.205 27 C -0.085 4.085 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.396 0.604 40 H 0.091 0.909 41 H 0.133 0.867 42 H 0.278 0.722 43 H 0.097 0.903 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.558 17.163 1.460 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.135 4.135 4 C -0.136 4.136 5 C -0.136 4.136 6 C -0.095 4.095 7 C -0.174 4.174 8 C 0.047 3.953 9 O -0.219 6.219 10 C -0.027 4.027 11 C 0.284 3.716 12 O -0.381 6.381 13 N -0.294 5.294 14 C -0.089 4.089 15 C -0.139 4.139 16 C -0.162 4.162 17 C 0.098 3.902 18 C -0.491 4.491 19 H 0.094 0.906 20 C -0.146 4.146 21 N -0.439 5.439 22 Si 0.741 3.259 23 H -0.191 1.191 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.225 4.225 27 C -0.104 4.104 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.229 0.771 40 H 0.110 0.890 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 13.095 16.865 0.569 21.360 hybrid contribution -0.419 -0.161 0.449 0.635 sum 12.677 16.705 1.018 20.995 Atomic orbital electron populations 1.20742 0.90442 1.02735 1.03096 1.20294 0.96923 0.92450 0.99829 1.20930 0.94185 0.97081 1.01338 1.21140 0.94228 0.98036 1.00170 1.20931 0.99808 0.91450 1.01381 1.20276 0.92973 0.96350 0.99944 1.20762 0.99770 0.94401 1.02455 1.18418 0.89422 0.85014 1.02425 1.86130 1.74456 1.34489 1.26820 1.22420 0.99860 0.94379 0.86080 1.20021 0.80965 0.84908 0.85710 1.90734 1.54585 1.69419 1.23377 1.42820 1.52747 1.25616 1.08186 1.17222 0.99459 0.89824 1.02381 1.20306 0.95788 0.99086 0.98769 1.21193 1.00278 0.95734 0.98983 1.17733 0.90291 0.92873 0.89311 1.19472 0.94241 0.98792 1.36602 0.90609 1.25884 0.98824 0.97001 0.92865 1.69742 1.14459 1.28701 1.30972 0.86241 0.78438 0.81419 0.79795 1.19051 1.20436 1.19074 1.20814 1.02648 0.98627 1.00453 1.20409 0.99569 0.93790 0.96681 0.90577 0.91231 0.91495 0.85676 0.85830 0.85700 0.91260 0.90335 0.91335 0.90306 0.90160 0.77068 0.89037 0.84980 0.91067 0.88529 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.79 36.01 0.35 -0.82 16 2 C -0.09 -1.05 5.89 -104.47 -0.62 -1.67 16 3 C -0.12 -1.07 9.70 -39.61 -0.38 -1.46 16 4 C -0.12 -0.98 10.04 -39.56 -0.40 -1.38 16 5 C -0.12 -1.06 9.70 -39.61 -0.38 -1.44 16 6 C -0.09 -1.04 5.89 -104.47 -0.62 -1.65 16 7 C -0.12 -1.15 9.79 36.01 0.35 -0.80 16 8 C 0.09 1.15 5.67 -39.22 -0.22 0.92 16 9 O -0.30 -4.49 7.86 -39.34 -0.31 -4.80 16 10 C 0.05 0.65 6.17 36.00 0.22 0.87 16 11 C 0.50 8.74 7.74 -10.99 -0.09 8.66 16 12 O -0.51 -11.35 13.92 -14.36 -0.20 -11.55 16 13 N -0.65 -11.10 5.30 -9.74 -0.05 -11.15 16 14 C 0.00 0.07 6.31 -83.57 -0.53 -0.46 16 15 C -0.12 -2.69 9.90 -39.79 -0.39 -3.08 16 16 C -0.14 -3.63 8.62 -39.26 -0.34 -3.96 16 17 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 18 C -0.46 -12.28 9.02 -37.85 -0.34 -12.62 16 19 H 0.08 1.94 7.85 -52.49 -0.41 1.52 16 20 C 0.07 1.76 5.42 -17.34 -0.09 1.66 16 21 N -0.81 -21.08 10.60 55.55 0.59 -20.49 16 22 Si 0.92 19.02 29.56 -169.99 -5.03 14.00 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 C -0.21 -5.23 9.74 -39.26 -0.38 -5.61 16 27 C -0.08 -2.04 8.61 -39.79 -0.34 -2.38 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.80 6.30 -51.92 -0.33 0.47 16 30 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 33 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.93 7.53 -51.93 -0.39 0.54 16 36 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.86 7.23 -51.93 -0.38 0.48 16 39 H 0.40 5.07 8.82 -40.82 -0.36 4.71 16 40 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 41 H 0.13 3.48 6.13 -52.48 -0.32 3.16 16 42 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 43 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 44 H 0.11 2.57 6.22 -52.48 -0.33 2.25 16 LS Contribution 371.37 15.07 5.60 5.60 Total: -1.00 -31.80 371.37 -10.06 -41.86 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.87 Total: 9.66 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -4.79 Total: -23.12 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.54 Total: -31.64 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.51 Total: -16.36 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.80 -10.06 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008126317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.449 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds