Wall clock time and date at job start Tue Mar 31 2020 13:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38144 * 120.02486 * 2 1 4 4 C 1.38262 * 120.05236 * 179.70579 * 3 2 1 5 5 C 1.38260 * 120.11532 * 0.29176 * 4 3 2 6 6 C 1.38146 * 120.05438 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.02799 * 180.02562 * 6 5 4 8 8 C 1.38729 * 119.94282 * 0.02562 * 6 5 4 9 9 O 1.35901 * 120.05483 * 180.02562 * 8 6 5 10 10 C 1.42900 * 117.00259 * 89.99700 * 9 8 6 11 11 C 1.50693 * 109.47465 * 179.97438 * 10 9 8 12 12 O 1.21289 * 119.99859 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00380 * 180.02562 * 11 10 9 14 14 C 1.39240 * 120.00040 * 175.71258 * 13 11 10 15 15 C 1.39483 * 119.82991 * 215.01306 * 14 13 11 16 16 C 1.36369 * 120.16980 * 179.75969 * 15 14 13 17 17 C 1.40871 * 119.82596 * 0.51349 * 16 15 14 18 18 C 1.41156 * 120.16391 * 179.72158 * 17 16 15 19 19 H 1.07997 * 119.99741 * 214.79825 * 18 17 16 20 20 C 1.39905 * 119.99953 * 34.80167 * 18 17 16 21 21 N 1.30863 * 120.00419 * 355.55721 * 20 18 17 22 22 Si 1.86803 * 119.99953 * 175.56127 * 20 18 17 23 23 H 1.48503 * 109.47326 * 59.99422 * 22 20 18 24 24 H 1.48499 * 109.47271 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47018 * 300.00032 * 22 20 18 26 26 C 1.40863 * 119.67490 * 359.73791 * 17 16 15 27 27 C 1.36379 * 119.82505 * 0.02562 * 26 17 16 28 28 H 1.08995 * 109.47238 * 90.00791 * 1 2 3 29 29 H 1.09011 * 109.46913 * 210.00400 * 1 2 3 30 30 H 1.08998 * 109.47469 * 330.00155 * 1 2 3 31 31 H 1.08000 * 119.97088 * 359.96936 * 3 2 1 32 32 H 1.08005 * 119.94138 * 180.26897 * 4 3 2 33 33 H 1.07997 * 119.97324 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.46578 * 90.00223 * 7 6 5 35 35 H 1.08996 * 109.46915 * 210.00054 * 7 6 5 36 36 H 1.08996 * 109.46972 * 330.00528 * 7 6 5 37 37 H 1.09003 * 109.47119 * 300.00319 * 10 9 8 38 38 H 1.09002 * 109.47310 * 60.00037 * 10 9 8 39 39 H 0.96997 * 119.99823 * 355.70410 * 13 11 10 40 40 H 1.08004 * 119.91755 * 0.02562 * 15 14 13 41 41 H 1.08005 * 120.08932 * 180.25074 * 16 15 14 42 42 H 0.96993 * 120.00653 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.08997 * 179.97438 * 26 17 16 44 44 H 1.08006 * 119.91548 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1961 0.0000 4 6 3.5809 1.1967 0.0061 5 6 4.2752 0.0011 0.0062 6 6 3.5886 -1.1976 0.0007 7 6 4.3460 -2.5005 0.0013 8 6 2.2013 -1.2010 -0.0055 9 8 1.5236 -2.3790 -0.0104 10 6 1.1944 -2.9435 1.2604 11 6 0.4497 -4.2377 1.0576 12 8 0.2235 -4.6377 -0.0649 13 7 0.0350 -4.9508 2.1234 14 6 -0.7299 -6.0994 1.9376 15 6 -1.7283 -6.4241 2.8559 16 6 -2.4848 -7.5447 2.6781 17 6 -2.2485 -8.3810 1.5694 18 6 -3.0234 -9.5458 1.3817 19 1 -2.5735 -10.4309 0.9567 20 6 -4.3742 -9.5537 1.7460 21 7 -4.8977 -8.5119 2.3403 22 14 -5.4304 -11.0513 1.3843 23 1 -4.8646 -12.2357 2.0788 24 1 -6.8140 -10.8094 1.8665 25 1 -5.4522 -11.2997 -0.0797 26 6 -1.2349 -8.0493 0.6492 27 6 -0.4898 -6.9227 0.8377 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5140 30 1 -0.3634 0.8900 0.5138 31 1 1.6582 2.1313 -0.0005 32 1 4.1195 2.1329 0.0105 33 1 5.3551 0.0043 0.0114 34 1 4.5239 -2.8167 1.0292 35 1 3.7614 -3.2608 -0.5167 36 1 5.3003 -2.3663 -0.5079 37 1 2.1095 -3.1343 1.8212 38 1 0.5666 -2.2467 1.8159 39 1 0.2695 -4.6640 3.0198 40 1 -1.9057 -5.7841 3.7076 41 1 -3.2603 -7.7927 3.3878 42 1 -5.8341 -8.5174 2.5932 43 1 -1.0477 -8.6859 -0.2029 44 1 0.2881 -6.6673 0.1333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008126317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:38 Heat of formation + Delta-G solvation = -46.915306 kcal Electronic energy + Delta-G solvation = -26023.963543 eV Core-core repulsion = 22291.406239 eV Total energy + Delta-G solvation = -3732.557304 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.58447 -40.88469 -39.15366 -38.06510 -36.17525 -34.76323 -34.54495 -32.22256 -31.53961 -31.15824 -29.58893 -27.73117 -27.55747 -26.43081 -23.53259 -22.87557 -22.53894 -21.84980 -21.36073 -19.30223 -18.89608 -18.65756 -17.68946 -17.62149 -16.99978 -16.45112 -16.34796 -16.01701 -15.70799 -15.12266 -14.95836 -14.84815 -14.49424 -14.36953 -14.07615 -13.98171 -13.88990 -13.84505 -13.62105 -13.59725 -13.25175 -12.89536 -12.86668 -12.77848 -12.50388 -12.47147 -12.29509 -12.13204 -11.79287 -11.41184 -11.23439 -10.95195 -10.82720 -10.61294 -9.54693 -9.50321 -9.48651 -8.76408 -8.51613 -6.34529 0.17342 0.36390 0.75800 1.11902 1.39277 1.44137 1.51019 1.66436 1.85891 2.23720 2.63254 2.79035 3.07991 3.62847 3.73433 3.80456 3.87463 4.03644 4.09182 4.11305 4.38222 4.38588 4.45561 4.50655 4.54117 4.60640 4.70529 4.74295 4.85357 4.91496 4.91753 5.10804 5.12731 5.16210 5.30817 5.31174 5.40766 5.50970 5.51608 5.61017 5.67881 5.82377 5.88496 6.00103 6.11742 6.37219 6.47997 6.65630 6.67971 6.95347 6.97821 7.31220 8.41052 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.030643 B = 0.002175 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.532480 B =12868.921627 C =13245.921371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.111 4.111 3 C -0.118 4.118 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.109 4.109 7 C -0.115 4.115 8 C 0.062 3.938 9 O -0.332 6.332 10 C 0.061 3.939 11 C 0.499 3.501 12 O -0.561 6.561 13 N -0.638 5.638 14 C 0.020 3.980 15 C -0.115 4.115 16 C -0.159 4.159 17 C 0.068 3.932 18 C -0.497 4.497 19 H 0.073 0.927 20 C 0.027 3.973 21 N -0.840 5.840 22 Si 0.988 3.012 23 H -0.257 1.257 24 H -0.267 1.267 25 H -0.266 1.266 26 C -0.223 4.223 27 C -0.097 4.097 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.148 0.852 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.421 0.579 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.285 0.715 43 H 0.095 0.905 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.751 19.660 2.638 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.111 4.111 3 C -0.136 4.136 4 C -0.131 4.131 5 C -0.136 4.136 6 C -0.110 4.110 7 C -0.171 4.171 8 C 0.019 3.981 9 O -0.248 6.248 10 C -0.016 4.016 11 C 0.287 3.713 12 O -0.438 6.438 13 N -0.285 5.285 14 C -0.073 4.073 15 C -0.135 4.135 16 C -0.180 4.180 17 C 0.066 3.934 18 C -0.528 4.528 19 H 0.091 0.909 20 C -0.185 4.185 21 N -0.467 5.467 22 Si 0.809 3.191 23 H -0.182 1.182 24 H -0.192 1.192 25 H -0.191 1.191 26 C -0.243 4.243 27 C -0.117 4.117 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.166 0.834 32 H 0.172 0.828 33 H 0.167 0.833 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.259 0.741 40 H 0.147 0.853 41 H 0.139 0.861 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 14.324 19.401 1.792 24.182 hybrid contribution -0.635 -0.738 0.066 0.975 sum 13.689 18.663 1.858 23.220 Atomic orbital electron populations 1.20732 0.90477 1.03050 1.02627 1.20462 0.97191 0.92853 1.00598 1.21247 0.94851 0.97167 1.00365 1.21547 0.94079 0.99108 0.98319 1.21260 1.01113 0.90902 1.00298 1.20468 0.92557 0.97486 1.00450 1.20743 0.99937 0.93392 1.03040 1.18692 0.90190 0.84545 1.04678 1.86088 1.75168 1.35844 1.27745 1.22376 1.00953 0.91978 0.86321 1.20885 0.79856 0.85933 0.84624 1.90716 1.56566 1.70972 1.25572 1.42691 1.51849 1.24103 1.09818 1.17266 0.98865 0.90427 1.00772 1.20570 0.94729 0.98437 0.99753 1.21196 1.00987 0.97037 0.98734 1.18049 0.91162 0.93929 0.90289 1.19702 0.95556 0.99028 1.38523 0.90925 1.26743 0.99451 1.00076 0.92198 1.69802 1.15122 1.30351 1.31472 0.85154 0.76866 0.77621 0.79415 1.18164 1.19153 1.19115 1.20928 1.03215 0.99474 1.00648 1.20510 0.99644 0.93911 0.97662 0.91499 0.92830 0.89192 0.83398 0.82762 0.83274 0.90073 0.93138 0.89629 0.87171 0.87512 0.74105 0.85330 0.86116 0.90397 0.88724 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.22 9.79 71.24 0.70 -1.52 16 2 C -0.11 -2.30 5.89 -19.77 -0.12 -2.41 16 3 C -0.12 -1.82 9.70 22.25 0.22 -1.60 16 4 C -0.11 -1.47 10.04 22.28 0.22 -1.24 16 5 C -0.12 -1.76 9.70 22.25 0.22 -1.54 16 6 C -0.11 -2.20 5.89 -19.77 -0.12 -2.32 16 7 C -0.11 -2.10 9.79 71.24 0.70 -1.40 16 8 C 0.06 1.50 5.67 22.50 0.13 1.63 16 9 O -0.33 -9.77 7.86 -73.40 -0.58 -10.35 16 10 C 0.06 1.47 6.17 71.23 0.44 1.91 16 11 C 0.50 17.19 7.74 87.65 0.68 17.87 16 12 O -0.56 -25.70 13.92 15.98 0.22 -25.47 16 13 N -0.64 -20.85 5.30 -303.11 -1.61 -22.46 16 14 C 0.02 0.87 6.31 38.56 0.24 1.12 16 15 C -0.11 -5.10 9.90 22.13 0.22 -4.89 16 16 C -0.16 -8.34 8.62 22.48 0.19 -8.14 16 17 C 0.07 3.80 5.55 -21.28 -0.12 3.69 16 18 C -0.50 -27.63 9.02 23.39 0.21 -27.42 16 19 H 0.07 3.90 7.85 -2.91 -0.02 3.87 16 20 C 0.03 1.41 5.42 85.24 0.46 1.88 16 21 N -0.84 -44.49 10.60 21.82 0.23 -44.26 16 22 Si 0.99 39.45 29.56 68.60 2.03 41.47 16 23 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 24 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 25 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 26 C -0.22 -11.88 9.74 22.48 0.22 -11.66 16 27 C -0.10 -4.81 8.61 22.13 0.19 -4.62 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.20 6.30 -2.38 -0.01 1.19 16 30 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 31 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 33 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.05 1.20 7.53 -2.39 -0.02 1.19 16 36 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 37 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.11 2.03 7.23 -2.39 -0.02 2.01 16 39 H 0.42 9.58 8.82 -92.71 -0.82 8.76 16 40 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 41 H 0.12 6.54 6.13 -2.91 -0.02 6.52 16 42 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 43 H 0.09 4.89 8.06 -2.91 -0.02 4.86 16 44 H 0.10 5.20 6.22 -2.91 -0.02 5.18 16 Total: -1.00 -73.11 371.37 5.19 -67.92 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: 0.21 Total: 33.82 kcal Atomic # 6 Polarization: -45.36 SS G_CDS: 4.68 Total: -40.68 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: -1.38 Total: -66.72 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.35 Total: -35.82 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.47 kcal Total: -73.11 5.19 -67.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008126317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.009 kcal (2) G-P(sol) polarization free energy of solvation -73.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds