Wall clock time and date at job start Tue Mar 31 2020 14:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52996 * 109.47445 * 2 1 4 4 C 1.50704 * 109.46954 * 119.99923 * 2 1 3 5 5 C 1.38361 * 119.85434 * 120.00357 * 4 2 1 6 6 C 1.37950 * 120.14788 * 180.02562 * 5 4 2 7 7 C 1.39596 * 119.85270 * 359.97438 * 6 5 4 8 8 C 1.47807 * 120.14833 * 180.02562 * 7 6 5 9 9 O 1.21568 * 119.99839 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00225 * 179.97438 * 8 7 6 11 11 C 1.39912 * 120.00108 * 184.25442 * 10 8 7 12 12 C 1.38935 * 120.00368 * 324.63108 * 11 10 8 13 13 C 1.37998 * 119.99405 * 179.76518 * 12 11 10 14 14 C 1.38904 * 120.00426 * 0.50993 * 13 12 11 15 15 O 1.35775 * 119.99860 * 179.72027 * 14 13 12 16 16 C 1.34810 * 117.00267 * 185.37108 * 15 14 13 17 17 H 1.07998 * 120.00043 * 354.96658 * 16 15 14 18 18 C 1.38629 * 120.00155 * 174.96168 * 16 15 14 19 19 N 1.31578 * 120.00405 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00184 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47373 * 89.99472 * 20 18 16 22 22 H 1.48497 * 109.47530 * 209.99592 * 20 18 16 23 23 H 1.48498 * 109.46899 * 329.99892 * 20 18 16 24 24 C 1.38913 * 120.00838 * 359.74436 * 14 13 12 25 25 C 1.38002 * 120.00181 * 359.97438 * 24 14 13 26 26 C 1.39593 * 119.70628 * 0.27373 * 7 6 5 27 27 C 1.37962 * 119.84844 * 359.44868 * 26 7 6 28 28 H 1.09006 * 109.47395 * 300.00553 * 1 2 3 29 29 H 1.09004 * 109.47226 * 60.00407 * 1 2 3 30 30 H 1.08998 * 109.47600 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47395 * 239.99447 * 2 1 3 32 32 H 1.08998 * 109.47335 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47041 * 299.99734 * 3 2 1 34 34 H 1.09006 * 109.47276 * 59.99374 * 3 2 1 35 35 H 1.08004 * 119.92492 * 359.97438 * 5 4 2 36 36 H 1.08002 * 120.07820 * 179.97438 * 6 5 4 37 37 H 0.96998 * 119.99915 * 4.53475 * 10 8 7 38 38 H 1.07998 * 120.00117 * 0.02562 * 12 11 10 39 39 H 1.07998 * 119.99802 * 180.25450 * 13 12 11 40 40 H 0.96999 * 120.00226 * 180.02562 * 19 18 16 41 41 H 1.07999 * 120.00005 * 179.97438 * 24 14 13 42 42 H 1.07994 * 119.99892 * 179.97438 * 25 24 14 43 43 H 1.07997 * 120.07693 * 179.69998 * 26 7 6 44 44 H 1.07999 * 119.92194 * 180.27467 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 2.8275 -1.8351 1.1001 6 6 3.2902 -2.4904 2.2224 7 6 2.9548 -2.0161 3.4917 8 6 3.4474 -2.7128 4.6986 9 8 4.1467 -3.7009 4.5871 10 7 3.1221 -2.2521 5.9227 11 6 3.6601 -2.8573 7.0637 12 6 3.8784 -4.2292 7.0851 13 6 4.4135 -4.8252 8.2088 14 6 4.7241 -4.0551 9.3223 15 8 5.2453 -4.6425 10.4299 16 6 5.4203 -3.8594 11.5132 17 1 5.2262 -2.7989 11.4499 18 6 5.8492 -4.4153 12.7085 19 7 6.0205 -3.6509 13.7657 20 14 6.1855 -6.2495 12.8180 21 1 7.6053 -6.5141 12.4724 22 1 5.9165 -6.7205 14.2004 23 1 5.3020 -6.9723 11.8681 24 6 4.5010 -2.6842 9.3031 25 6 3.9713 -2.0870 8.1774 26 6 2.1477 -0.8840 3.6162 27 6 1.6964 -0.2347 2.4856 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.0860 -2.2012 0.1174 36 1 3.9106 -3.3684 2.1193 37 1 2.5119 -1.5035 6.0128 38 1 3.6331 -4.8285 6.2208 39 1 4.5870 -5.8911 8.2240 40 1 6.3210 -4.0399 14.6019 41 1 4.7422 -2.0856 10.1691 42 1 3.7975 -1.0212 8.1626 43 1 1.8805 -0.5147 4.5953 44 1 1.0756 0.6439 2.5806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023150590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:43 Heat of formation + Delta-G solvation = -16.873853 kcal Electronic energy + Delta-G solvation = -25458.130142 eV Core-core repulsion = 21726.875533 eV Total energy + Delta-G solvation = -3731.254609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.65005 -39.51017 -38.67316 -36.67543 -35.59722 -34.13997 -32.34519 -31.33007 -30.47861 -30.30812 -28.04670 -27.58920 -25.39730 -24.36045 -23.05212 -22.38301 -21.78222 -20.61536 -20.00116 -18.40358 -17.83757 -17.37336 -16.61181 -16.26466 -15.43987 -15.15097 -15.08804 -14.71227 -14.43636 -14.13330 -14.01903 -13.86308 -13.78009 -13.66638 -13.61869 -12.99870 -12.85126 -12.77963 -12.47292 -12.29597 -12.25289 -11.82930 -11.74779 -11.64502 -11.55538 -11.25150 -11.05667 -10.92798 -10.82363 -10.17746 -9.86691 -9.61822 -9.33149 -9.30234 -9.04990 -8.77662 -8.30034 -7.07069 -6.42018 -4.07831 0.56726 1.06782 2.03877 2.12665 2.81406 3.19380 3.23842 3.26923 3.41782 3.64600 4.17278 4.24310 4.30377 4.45619 4.58154 4.61715 4.73078 4.74817 4.87735 4.97259 5.02027 5.10687 5.15141 5.17803 5.37963 5.40809 5.44916 5.48606 5.58925 5.68166 5.71494 5.75251 5.78255 5.99086 6.02797 6.07293 6.10854 6.22002 6.23808 6.56588 6.67115 6.74335 6.92623 7.06635 7.21885 7.57528 7.61151 7.77909 8.01761 8.27164 8.93248 9.55688 10.65413 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.039122 B = 0.001966 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.542297 B =14238.706969 C =14698.303743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.061 4.061 3 C -0.145 4.145 4 C -0.055 4.055 5 C -0.126 4.126 6 C -0.056 4.056 7 C -0.133 4.133 8 C 0.550 3.450 9 O -0.524 6.524 10 N -0.655 5.655 11 C 0.042 3.958 12 C -0.069 4.069 13 C -0.178 4.178 14 C 0.153 3.847 15 O -0.216 6.216 16 C -0.389 4.389 17 H 0.107 0.893 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.207 4.207 25 C -0.090 4.090 26 C -0.084 4.084 27 C -0.123 4.123 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.402 0.598 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.279 0.721 41 H 0.138 0.862 42 H 0.114 0.886 43 H 0.127 0.873 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.202 9.207 -26.269 30.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.079 4.079 3 C -0.203 4.203 4 C -0.055 4.055 5 C -0.144 4.144 6 C -0.075 4.075 7 C -0.136 4.136 8 C 0.338 3.662 9 O -0.401 6.401 10 N -0.300 5.300 11 C -0.050 4.050 12 C -0.089 4.089 13 C -0.198 4.198 14 C 0.101 3.899 15 O -0.121 6.121 16 C -0.465 4.465 17 H 0.124 0.876 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.226 4.226 25 C -0.110 4.110 26 C -0.103 4.103 27 C -0.141 4.141 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.237 0.763 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.089 0.911 41 H 0.156 0.844 42 H 0.132 0.868 43 H 0.144 0.856 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.556 8.297 -26.064 29.318 hybrid contribution -0.078 -0.095 0.388 0.407 sum -10.633 8.201 -25.676 28.976 Atomic orbital electron populations 1.21867 0.94027 1.02218 1.02124 1.20205 0.96193 0.96236 0.95281 1.21869 1.01412 0.94851 1.02124 1.20096 0.95761 0.94807 0.94839 1.21057 0.98818 0.95850 0.98714 1.21289 0.96700 0.98816 0.90708 1.19955 1.02011 0.97849 0.93779 1.18318 0.80410 0.84386 0.83041 1.90771 1.37579 1.25350 1.86405 1.43120 1.47039 1.35435 1.04413 1.17296 1.08272 0.92070 0.87384 1.20751 0.98218 0.92680 0.97221 1.20148 1.07559 0.99606 0.92485 1.19163 0.91824 0.91307 0.87628 1.83581 1.70805 1.38837 1.18848 1.20760 1.46417 0.93026 0.86249 0.87609 1.24468 0.95836 1.00117 0.93601 1.69653 1.44526 1.36264 1.01281 0.86174 0.79572 0.83604 0.77549 1.19869 1.20827 1.18291 1.21093 1.07005 0.94911 0.99611 1.20543 0.99534 0.98206 0.92766 1.21316 0.95788 0.94159 0.99046 1.20896 1.01127 1.00472 0.91587 0.92295 0.92224 0.92391 0.90221 0.92373 0.92228 0.92285 0.85424 0.84520 0.76265 0.85138 0.86073 0.91052 0.84433 0.86847 0.85567 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.00 37.15 0.33 -0.37 16 2 C -0.06 -0.33 3.09 -91.78 -0.28 -0.62 16 3 C -0.15 -0.72 9.00 37.16 0.33 -0.39 16 4 C -0.05 -0.41 4.79 -104.53 -0.50 -0.91 16 5 C -0.13 -1.05 9.65 -39.64 -0.38 -1.43 16 6 C -0.06 -0.59 9.60 -39.18 -0.38 -0.97 16 7 C -0.13 -1.51 5.87 -104.97 -0.62 -2.13 16 8 C 0.55 8.07 7.61 -12.35 -0.09 7.98 16 9 O -0.52 -9.54 13.81 5.31 0.07 -9.46 16 10 N -0.66 -9.07 5.28 -10.69 -0.06 -9.13 16 11 C 0.04 0.74 6.29 -83.65 -0.53 0.21 16 12 C -0.07 -1.32 8.68 -39.41 -0.34 -1.66 16 13 C -0.18 -3.72 9.98 -39.42 -0.39 -4.12 16 14 C 0.15 3.58 6.65 -39.09 -0.26 3.32 16 15 O -0.22 -5.73 8.58 0.03 0.00 -5.72 16 16 C -0.39 -10.92 9.94 30.88 0.31 -10.61 16 17 H 0.11 3.00 5.43 -52.49 -0.28 2.72 16 18 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 19 N -0.88 -25.31 13.96 55.48 0.77 -24.53 16 20 Si 0.91 21.78 28.62 -169.99 -4.86 16.92 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 24 C -0.21 -4.40 9.16 -39.42 -0.36 -4.76 16 25 C -0.09 -1.61 9.96 -39.41 -0.39 -2.00 16 26 C -0.08 -0.74 9.54 -39.18 -0.37 -1.11 16 27 C -0.12 -0.92 8.69 -39.64 -0.34 -1.27 16 28 H 0.06 0.28 7.38 -51.93 -0.38 -0.10 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.39 7.87 -51.93 -0.41 -0.02 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.28 7.37 -51.93 -0.38 -0.10 16 35 H 0.13 0.80 7.94 -52.48 -0.42 0.38 16 36 H 0.14 1.49 7.65 -52.49 -0.40 1.08 16 37 H 0.40 4.09 6.87 -40.82 -0.28 3.81 16 38 H 0.13 2.45 6.25 -52.49 -0.33 2.12 16 39 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 40 H 0.28 7.43 8.31 -40.82 -0.34 7.10 16 41 H 0.14 3.03 5.63 -52.49 -0.30 2.74 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.13 0.83 6.41 -52.49 -0.34 0.50 16 44 H 0.13 0.70 7.08 -52.49 -0.37 0.33 16 LS Contribution 367.45 15.07 5.54 5.54 Total: -1.00 -32.04 367.45 -8.46 -40.50 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.56 Total: 5.07 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -4.37 Total: -19.17 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.72 Total: -33.66 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.07 Total: -15.19 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.86 Total: 16.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.04 -8.46 -40.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.627 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds