Wall clock time and date at job start Tue Mar 31 2020 14:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52996 * 109.47445 * 2 1 4 4 C 1.50704 * 109.46954 * 119.99923 * 2 1 3 5 5 C 1.38361 * 119.85434 * 120.00357 * 4 2 1 6 6 C 1.37950 * 120.14788 * 180.02562 * 5 4 2 7 7 C 1.39596 * 119.85270 * 359.97438 * 6 5 4 8 8 C 1.47807 * 120.14833 * 180.02562 * 7 6 5 9 9 O 1.21568 * 119.99839 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00225 * 179.97438 * 8 7 6 11 11 C 1.39912 * 120.00108 * 184.25442 * 10 8 7 12 12 C 1.38935 * 120.00368 * 324.63108 * 11 10 8 13 13 C 1.37998 * 119.99405 * 179.76518 * 12 11 10 14 14 C 1.38904 * 120.00426 * 0.50993 * 13 12 11 15 15 O 1.35775 * 119.99860 * 179.72027 * 14 13 12 16 16 C 1.34810 * 117.00267 * 185.37108 * 15 14 13 17 17 H 1.07998 * 120.00043 * 354.96658 * 16 15 14 18 18 C 1.38629 * 120.00155 * 174.96168 * 16 15 14 19 19 N 1.31578 * 120.00405 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00184 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47373 * 89.99472 * 20 18 16 22 22 H 1.48497 * 109.47530 * 209.99592 * 20 18 16 23 23 H 1.48498 * 109.46899 * 329.99892 * 20 18 16 24 24 C 1.38913 * 120.00838 * 359.74436 * 14 13 12 25 25 C 1.38002 * 120.00181 * 359.97438 * 24 14 13 26 26 C 1.39593 * 119.70628 * 0.27373 * 7 6 5 27 27 C 1.37962 * 119.84844 * 359.44868 * 26 7 6 28 28 H 1.09006 * 109.47395 * 300.00553 * 1 2 3 29 29 H 1.09004 * 109.47226 * 60.00407 * 1 2 3 30 30 H 1.08998 * 109.47600 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47395 * 239.99447 * 2 1 3 32 32 H 1.08998 * 109.47335 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47041 * 299.99734 * 3 2 1 34 34 H 1.09006 * 109.47276 * 59.99374 * 3 2 1 35 35 H 1.08004 * 119.92492 * 359.97438 * 5 4 2 36 36 H 1.08002 * 120.07820 * 179.97438 * 6 5 4 37 37 H 0.96998 * 119.99915 * 4.53475 * 10 8 7 38 38 H 1.07998 * 120.00117 * 0.02562 * 12 11 10 39 39 H 1.07998 * 119.99802 * 180.25450 * 13 12 11 40 40 H 0.96999 * 120.00226 * 180.02562 * 19 18 16 41 41 H 1.07999 * 120.00005 * 179.97438 * 24 14 13 42 42 H 1.07994 * 119.99892 * 179.97438 * 25 24 14 43 43 H 1.07997 * 120.07693 * 179.69998 * 26 7 6 44 44 H 1.07999 * 119.92194 * 180.27467 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 2.8275 -1.8351 1.1001 6 6 3.2902 -2.4904 2.2224 7 6 2.9548 -2.0161 3.4917 8 6 3.4474 -2.7128 4.6986 9 8 4.1467 -3.7009 4.5871 10 7 3.1221 -2.2521 5.9227 11 6 3.6601 -2.8573 7.0637 12 6 3.8784 -4.2292 7.0851 13 6 4.4135 -4.8252 8.2088 14 6 4.7241 -4.0551 9.3223 15 8 5.2453 -4.6425 10.4299 16 6 5.4203 -3.8594 11.5132 17 1 5.2262 -2.7989 11.4499 18 6 5.8492 -4.4153 12.7085 19 7 6.0205 -3.6509 13.7657 20 14 6.1855 -6.2495 12.8180 21 1 7.6053 -6.5141 12.4724 22 1 5.9165 -6.7205 14.2004 23 1 5.3020 -6.9723 11.8681 24 6 4.5010 -2.6842 9.3031 25 6 3.9713 -2.0870 8.1774 26 6 2.1477 -0.8840 3.6162 27 6 1.6964 -0.2347 2.4856 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.0860 -2.2012 0.1174 36 1 3.9106 -3.3684 2.1193 37 1 2.5119 -1.5035 6.0128 38 1 3.6331 -4.8285 6.2208 39 1 4.5870 -5.8911 8.2240 40 1 6.3210 -4.0399 14.6019 41 1 4.7422 -2.0856 10.1691 42 1 3.7975 -1.0212 8.1626 43 1 1.8805 -0.5147 4.5953 44 1 1.0756 0.6439 2.5806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023150590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:42 Heat of formation + Delta-G solvation = -34.457175 kcal Electronic energy + Delta-G solvation = -25458.892612 eV Core-core repulsion = 21726.875533 eV Total energy + Delta-G solvation = -3732.017079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.78803 -40.77488 -39.94725 -38.24341 -36.21858 -35.52428 -34.37096 -32.07419 -31.92557 -31.27016 -29.50501 -27.93651 -27.24663 -25.32160 -24.00742 -23.71812 -23.03898 -21.76482 -20.80714 -19.89041 -19.34668 -19.09384 -17.97660 -17.00259 -16.64299 -16.32305 -16.20692 -15.93016 -15.71185 -15.64293 -15.31668 -15.07111 -14.67948 -14.50876 -14.44434 -14.28300 -14.16255 -14.08170 -13.66060 -13.43974 -13.39194 -13.21751 -12.86854 -12.74110 -12.59914 -12.27472 -12.00026 -11.99390 -11.77976 -11.51745 -11.42411 -11.23909 -10.94402 -10.68528 -9.96598 -9.90385 -9.75743 -8.71382 -8.49368 -6.20619 -0.24167 0.40783 0.46447 0.52416 1.32216 1.35615 1.52066 1.78061 2.02452 2.28557 2.72389 2.85860 3.01678 3.14859 3.54075 3.76561 3.79988 3.98301 4.01252 4.08759 4.16856 4.34199 4.41308 4.43845 4.48987 4.52559 4.56210 4.68751 4.86121 4.87016 4.96364 5.03379 5.04215 5.06442 5.12891 5.17124 5.28447 5.33878 5.39076 5.42766 5.43322 5.47181 5.51261 5.66662 5.74851 5.87781 5.92135 6.16515 6.44376 6.85007 7.10395 7.58645 8.61618 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.039122 B = 0.001966 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.542297 B =14238.706969 C =14698.303743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.060 4.060 3 C -0.145 4.145 4 C -0.047 4.047 5 C -0.130 4.130 6 C -0.070 4.070 7 C -0.156 4.156 8 C 0.551 3.449 9 O -0.565 6.565 10 N -0.645 5.645 11 C 0.068 3.932 12 C -0.076 4.076 13 C -0.177 4.177 14 C 0.116 3.884 15 O -0.244 6.244 16 C -0.398 4.398 17 H 0.088 0.912 18 C 0.012 3.988 19 N -0.920 5.920 20 Si 0.966 3.034 21 H -0.268 1.268 22 H -0.267 1.267 23 H -0.265 1.265 24 C -0.213 4.213 25 C -0.082 4.082 26 C -0.079 4.079 27 C -0.123 4.123 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.146 0.854 36 H 0.123 0.877 37 H 0.423 0.577 38 H 0.137 0.863 39 H 0.128 0.872 40 H 0.285 0.715 41 H 0.124 0.876 42 H 0.155 0.845 43 H 0.150 0.850 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.004 10.773 -29.182 33.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.202 4.202 4 C -0.048 4.048 5 C -0.148 4.148 6 C -0.090 4.090 7 C -0.159 4.159 8 C 0.342 3.658 9 O -0.445 6.445 10 N -0.292 5.292 11 C -0.026 4.026 12 C -0.096 4.096 13 C -0.197 4.197 14 C 0.066 3.934 15 O -0.151 6.151 16 C -0.474 4.474 17 H 0.105 0.895 18 C -0.187 4.187 19 N -0.561 5.561 20 Si 0.789 3.211 21 H -0.193 1.193 22 H -0.191 1.191 23 H -0.189 1.189 24 C -0.233 4.233 25 C -0.102 4.102 26 C -0.097 4.097 27 C -0.140 4.140 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.164 0.836 36 H 0.141 0.859 37 H 0.263 0.737 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.094 0.906 41 H 0.142 0.858 42 H 0.173 0.827 43 H 0.167 0.833 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.400 9.908 -29.026 33.082 hybrid contribution 0.317 -0.395 0.861 0.999 sum -12.082 9.513 -28.166 32.090 Atomic orbital electron populations 1.21867 0.93314 1.02068 1.02912 1.20262 0.96671 0.96426 0.94467 1.21871 1.00966 0.94449 1.02915 1.20438 0.94365 0.94054 0.95922 1.21264 0.98690 0.96009 0.98790 1.21324 0.97234 0.98979 0.91415 1.19747 1.04422 0.99435 0.92276 1.18880 0.79360 0.83726 0.83839 1.90752 1.39462 1.27309 1.86982 1.43043 1.47197 1.35812 1.03139 1.17424 1.05379 0.91576 0.88185 1.20911 0.98198 0.93774 0.96705 1.20318 1.07083 1.00072 0.92192 1.19598 0.93607 0.92618 0.87571 1.83529 1.73369 1.38923 1.19292 1.20741 1.46710 0.92637 0.87334 0.89494 1.25221 0.95930 1.04272 0.93260 1.69725 1.46459 1.37949 1.01930 0.85274 0.79321 0.78536 0.77965 1.19306 1.19135 1.18895 1.21157 1.07411 0.94216 1.00507 1.20824 0.97887 1.00190 0.91261 1.21554 0.94552 0.92909 1.00728 1.21221 1.00810 1.00938 0.91054 0.91897 0.91146 0.93006 0.89599 0.93084 0.91136 0.91896 0.83646 0.85887 0.73723 0.84567 0.85406 0.90585 0.85816 0.82696 0.83287 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.00 71.98 0.65 -0.27 16 2 C -0.06 -0.46 3.09 -11.54 -0.04 -0.49 16 3 C -0.14 -0.96 9.00 71.98 0.65 -0.31 16 4 C -0.05 -0.56 4.79 -19.80 -0.09 -0.66 16 5 C -0.13 -1.88 9.65 22.23 0.21 -1.67 16 6 C -0.07 -1.42 9.60 22.53 0.22 -1.20 16 7 C -0.16 -3.27 5.87 -20.09 -0.12 -3.38 16 8 C 0.55 15.34 7.61 86.78 0.66 16.00 16 9 O -0.57 -20.38 13.81 -3.93 -0.05 -20.43 16 10 N -0.65 -16.15 5.28 -306.00 -1.62 -17.76 16 11 C 0.07 2.25 6.29 38.19 0.24 2.49 16 12 C -0.08 -2.85 8.68 22.38 0.19 -2.66 16 13 C -0.18 -7.46 9.98 22.37 0.22 -7.24 16 14 C 0.12 5.54 6.65 22.59 0.15 5.69 16 15 O -0.24 -13.42 8.58 -22.81 -0.20 -13.62 16 16 C -0.40 -23.35 9.94 67.91 0.68 -22.67 16 17 H 0.09 5.24 5.43 -2.91 -0.02 5.22 16 18 C 0.01 0.69 5.49 84.82 0.47 1.15 16 19 N -0.92 -54.64 13.96 21.61 0.30 -54.34 16 20 Si 0.97 45.95 28.62 68.60 1.96 47.91 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 24 C -0.21 -9.19 9.16 22.38 0.20 -8.99 16 25 C -0.08 -2.75 9.96 22.38 0.22 -2.53 16 26 C -0.08 -1.12 9.54 22.53 0.21 -0.90 16 27 C -0.12 -1.38 8.69 22.23 0.19 -1.19 16 28 H 0.06 0.36 7.38 -2.38 -0.02 0.34 16 29 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.39 16 31 H 0.09 0.58 7.87 -2.38 -0.02 0.56 16 32 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.06 0.37 7.37 -2.38 -0.02 0.35 16 35 H 0.15 1.50 7.94 -2.91 -0.02 1.48 16 36 H 0.12 2.73 7.65 -2.91 -0.02 2.70 16 37 H 0.42 6.99 6.87 -92.71 -0.64 6.35 16 38 H 0.14 5.03 6.25 -2.91 -0.02 5.01 16 39 H 0.13 5.09 8.06 -2.91 -0.02 5.07 16 40 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 41 H 0.12 5.68 5.63 -2.91 -0.02 5.66 16 42 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 43 H 0.15 1.31 6.41 -2.91 -0.02 1.29 16 44 H 0.15 0.95 7.08 -2.91 -0.02 0.93 16 Total: -1.00 -72.46 367.45 5.72 -66.74 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.40 Total: 20.32 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 4.92 Total: -28.83 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -1.31 Total: -72.10 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.25 Total: -34.05 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.96 Total: 47.91 kcal Total: -72.46 5.72 -66.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.281 kcal (2) G-P(sol) polarization free energy of solvation -72.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds