Wall clock time and date at job start Tue Mar 31 2020 14:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46841 * 2 1 4 4 C 1.50706 * 109.46736 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.99964 * 90.00939 * 4 3 2 6 6 C 1.38235 * 120.00310 * 179.97438 * 5 4 3 7 7 C 1.38234 * 119.99829 * 0.02562 * 6 5 4 8 8 S 1.76199 * 120.00019 * 179.97438 * 7 6 5 9 9 O 1.42100 * 106.40198 * 203.53954 * 8 7 6 10 10 O 1.42096 * 106.39959 * 336.46020 * 8 7 6 11 11 N 1.65599 * 107.21658 * 90.00010 * 8 7 6 12 12 C 1.46502 * 119.99727 * 269.99791 * 11 8 7 13 13 C 1.50696 * 109.47005 * 95.00367 * 12 11 8 14 14 H 1.07999 * 120.00504 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00164 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99538 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00254 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47001 * 89.99778 * 17 15 13 19 19 H 1.48497 * 109.46774 * 209.99690 * 17 15 13 20 20 H 1.48505 * 109.46797 * 329.99493 * 17 15 13 21 21 C 1.46499 * 120.00337 * 89.99803 * 11 8 7 22 22 C 1.52998 * 109.46863 * 119.99743 * 21 11 8 23 23 C 1.52994 * 109.47333 * 239.99729 * 21 11 8 24 24 C 1.38238 * 119.99674 * 0.25365 * 7 6 5 25 25 C 1.38228 * 120.00121 * 359.49261 * 24 7 6 26 26 H 1.08999 * 109.46742 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47023 * 299.99164 * 1 2 3 28 28 H 1.08992 * 109.47308 * 59.99778 * 1 2 3 29 29 H 1.09004 * 109.46937 * 240.00356 * 2 1 3 30 30 H 1.08997 * 109.47225 * 120.00708 * 2 1 3 31 31 H 1.09000 * 109.46629 * 60.00595 * 3 2 1 32 32 H 1.08992 * 109.47351 * 300.00196 * 3 2 1 33 33 H 1.08005 * 119.99901 * 359.97438 * 5 4 3 34 34 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47107 * 215.00120 * 12 11 8 36 36 H 1.08998 * 109.47122 * 335.00235 * 12 11 8 37 37 H 0.97010 * 119.99744 * 180.02562 * 16 15 13 38 38 H 1.09006 * 109.46765 * 0.02562 * 21 11 8 39 39 H 1.08998 * 109.47268 * 60.00919 * 22 21 11 40 40 H 1.09003 * 109.47129 * 180.02562 * 22 21 11 41 41 H 1.09000 * 109.47909 * 300.00202 * 22 21 11 42 42 H 1.09004 * 109.46820 * 60.00581 * 23 21 11 43 43 H 1.09001 * 109.47274 * 179.97438 * 23 21 11 44 44 H 1.08992 * 109.47375 * 299.99906 * 23 21 11 45 45 H 1.08004 * 119.99572 * 179.72682 * 24 7 6 46 46 H 1.08004 * 120.00400 * 180.25458 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.2377 1.4429 -1.1980 6 6 5.6200 1.4434 -1.1987 7 6 6.3117 1.4430 -0.0019 8 16 8.0737 1.4429 -0.0027 9 8 8.4755 0.8981 1.2467 10 8 8.4744 0.8989 -1.2527 11 7 8.5639 3.0247 -0.0024 12 6 8.7802 3.7247 -1.2710 13 6 7.5342 4.4862 -1.6433 14 1 6.6677 4.4518 -0.9997 15 6 7.5000 5.2260 -2.8064 16 7 8.5549 5.2675 -3.5905 17 14 5.9552 6.1693 -3.2683 18 1 6.0200 7.5371 -2.6936 19 1 5.8531 6.2581 -4.7471 20 1 4.7646 5.4626 -2.7314 21 6 8.7813 3.7241 1.2664 22 6 10.2350 4.1944 1.3469 23 6 7.8485 4.9340 1.3482 24 6 5.6210 1.4368 1.1956 25 6 4.2388 1.4416 1.1962 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.6972 1.4427 -2.1331 34 1 6.1596 1.4432 -2.1342 35 1 9.6129 4.4201 -1.1650 36 1 9.0097 2.9995 -2.0517 37 1 8.5310 5.7882 -4.4086 38 1 8.5724 3.0471 2.0948 39 1 10.4443 4.8713 0.5186 40 1 10.3969 4.7144 2.2911 41 1 10.8996 3.3325 1.2886 42 1 6.8129 4.5989 1.2909 43 1 8.0100 5.4541 2.2924 44 1 8.0578 5.6108 0.5199 45 1 6.1615 1.4320 2.1306 46 1 3.6991 1.4409 2.1317 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530551.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:46 Heat of formation + Delta-G solvation = -71.567290 kcal Electronic energy + Delta-G solvation = -26812.243097 eV Core-core repulsion = 23214.060754 eV Total energy + Delta-G solvation = -3598.182343 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.21933 -36.92470 -36.59313 -35.28313 -35.16205 -32.81163 -31.19786 -30.78385 -30.60694 -26.97850 -26.72396 -26.47401 -22.83968 -22.59938 -22.47733 -20.97860 -20.28584 -18.37473 -17.43349 -16.92650 -16.41375 -15.87729 -15.41165 -15.16390 -14.61453 -14.30651 -14.25853 -13.77731 -13.71194 -13.56589 -13.26193 -13.16705 -12.94611 -12.38666 -12.31728 -12.21943 -12.08867 -11.78395 -11.48800 -11.47021 -11.40789 -11.32123 -11.18093 -11.07908 -11.06939 -10.95010 -10.78976 -10.73780 -10.50240 -10.33513 -10.27366 -9.85955 -9.57587 -8.86324 -8.74196 -8.47396 -8.02195 -6.09884 -4.14274 0.96941 1.24937 1.59726 3.23886 3.31890 3.33819 3.52834 3.86908 4.37300 4.39386 4.63017 4.71948 4.85607 4.90627 5.08881 5.16018 5.24290 5.27763 5.36579 5.39883 5.54667 5.58420 5.64002 5.70373 5.71180 5.78401 5.80199 5.97986 5.99963 6.02914 6.11055 6.17900 6.21462 6.31603 6.40495 6.47126 6.49227 6.58637 6.66194 6.79181 7.11976 7.12740 7.39583 7.46217 7.68453 7.87934 8.17623 8.90308 9.50537 10.98126 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010412 B = 0.005442 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.645963 B = 5143.927383 C = 6680.921341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.086 4.086 4 C -0.037 4.037 5 C -0.142 4.142 6 C 0.007 3.993 7 C -0.666 4.666 8 S 2.688 3.312 9 O -0.981 6.981 10 O -0.959 6.959 11 N -0.977 5.977 12 C 0.243 3.757 13 C -0.533 4.533 14 H 0.064 0.936 15 C 0.066 3.934 16 N -0.890 5.890 17 Si 0.887 3.113 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.150 3.850 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.022 4.022 25 C -0.147 4.147 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.143 0.857 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.263 0.737 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.045 0.955 44 H 0.085 0.915 45 H 0.133 0.867 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.804 -5.825 9.200 14.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.124 4.124 4 C -0.038 4.038 5 C -0.161 4.161 6 C -0.013 4.013 7 C -0.752 4.752 8 S 2.778 3.222 9 O -0.972 6.972 10 O -0.949 6.949 11 N -0.816 5.816 12 C 0.121 3.879 13 C -0.573 4.573 14 H 0.083 0.917 15 C -0.137 4.137 16 N -0.528 5.528 17 Si 0.714 3.286 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.043 3.957 22 C -0.215 4.215 23 C -0.216 4.216 24 C -0.041 4.041 25 C -0.166 4.166 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.144 0.856 34 H 0.161 0.839 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.104 0.896 45 H 0.151 0.849 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.203 -6.484 9.004 14.416 hybrid contribution -1.659 1.107 -0.438 2.042 sum -10.862 -5.377 8.566 14.842 Atomic orbital electron populations 1.21785 0.95643 1.01649 1.01862 1.21508 0.95649 0.95905 1.02602 1.20737 0.90831 0.97571 1.03227 1.20105 0.95545 0.94654 0.93466 1.21124 0.94365 1.02927 0.97640 1.20962 0.94339 0.88801 0.97153 1.31166 1.28202 1.16719 0.99125 1.01908 0.73866 0.73389 0.73005 1.93494 1.81481 1.77571 1.44619 1.93545 1.80914 1.77037 1.43442 1.57469 1.80553 1.30132 1.13445 1.19242 0.97550 0.93177 0.77937 1.21603 0.99699 1.29620 1.06332 0.91734 1.24907 0.96045 0.96612 0.96152 1.69930 1.28729 1.40896 1.13247 0.86676 0.83788 0.80405 0.77685 1.20676 1.21197 1.19821 1.20661 0.95583 0.94571 0.84892 1.22093 0.95930 1.01586 1.01921 1.22206 0.99061 0.98624 1.01731 1.20815 0.94508 0.92357 0.96457 1.21002 0.94126 1.03980 0.97483 0.92686 0.92722 0.92652 0.91660 0.91760 0.90789 0.90677 0.85610 0.83920 0.93747 0.93053 0.92686 0.90143 0.91253 0.92406 0.92849 0.93025 0.93589 0.89641 0.84916 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 3 C -0.09 -0.91 5.34 -27.88 -0.15 -1.06 16 4 C -0.04 -0.52 5.13 -104.62 -0.54 -1.05 16 5 C -0.14 -2.21 9.70 -39.59 -0.38 -2.60 16 6 C 0.01 0.12 9.52 -39.58 -0.38 -0.26 16 7 C -0.67 -12.20 5.97 -39.58 -0.24 -12.44 16 8 S 2.69 54.17 5.69 -107.50 -0.61 53.56 16 9 O -0.98 -19.90 15.84 -57.17 -0.91 -20.81 16 10 O -0.96 -22.06 15.83 -57.17 -0.91 -22.97 16 11 N -0.98 -19.85 2.73 -108.58 -0.30 -20.14 16 12 C 0.24 5.79 5.01 -5.19 -0.03 5.77 16 13 C -0.53 -13.39 7.53 -34.44 -0.26 -13.65 16 14 H 0.06 1.60 7.08 -52.49 -0.37 1.22 16 15 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -24.79 13.29 55.43 0.74 -24.05 16 17 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C 0.15 2.60 3.24 -67.94 -0.22 2.38 16 22 C -0.16 -2.48 9.16 37.16 0.34 -2.14 16 23 C -0.16 -2.65 8.21 37.15 0.30 -2.35 16 24 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 25 C -0.15 -2.04 9.70 -39.59 -0.38 -2.42 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 34 H 0.14 2.71 7.62 -52.49 -0.40 2.31 16 35 H 0.04 1.09 6.45 -51.93 -0.33 0.76 16 36 H 0.05 1.36 6.91 -51.93 -0.36 1.00 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.08 1.29 6.91 -51.93 -0.36 0.93 16 39 H 0.07 1.19 6.69 -51.93 -0.35 0.84 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.88 7.93 -51.93 -0.41 0.47 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 1.65 6.65 -51.93 -0.35 1.31 16 45 H 0.13 1.89 7.61 -52.48 -0.40 1.49 16 46 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 383.15 15.07 5.77 5.77 Total: -1.00 -30.22 383.15 -10.95 -41.17 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.53 Total: 2.97 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: -2.19 Total: -30.97 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.44 Total: -44.19 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -1.81 Total: -43.77 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 54.17 SS G_CDS: -0.61 Total: 53.56 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.22 -10.95 -41.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530551.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.395 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds