Wall clock time and date at job start Tue Mar 31 2020 14:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46841 * 2 1 4 4 C 1.50706 * 109.46736 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.99964 * 90.00939 * 4 3 2 6 6 C 1.38235 * 120.00310 * 179.97438 * 5 4 3 7 7 C 1.38234 * 119.99829 * 0.02562 * 6 5 4 8 8 S 1.76199 * 120.00019 * 179.97438 * 7 6 5 9 9 O 1.42100 * 106.40198 * 203.53954 * 8 7 6 10 10 O 1.42096 * 106.39959 * 336.46020 * 8 7 6 11 11 N 1.65599 * 107.21658 * 90.00010 * 8 7 6 12 12 C 1.46502 * 119.99727 * 269.99791 * 11 8 7 13 13 C 1.50696 * 109.47005 * 95.00367 * 12 11 8 14 14 H 1.07999 * 120.00504 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00164 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99538 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00254 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47001 * 89.99778 * 17 15 13 19 19 H 1.48497 * 109.46774 * 209.99690 * 17 15 13 20 20 H 1.48505 * 109.46797 * 329.99493 * 17 15 13 21 21 C 1.46499 * 120.00337 * 89.99803 * 11 8 7 22 22 C 1.52998 * 109.46863 * 119.99743 * 21 11 8 23 23 C 1.52994 * 109.47333 * 239.99729 * 21 11 8 24 24 C 1.38238 * 119.99674 * 0.25365 * 7 6 5 25 25 C 1.38228 * 120.00121 * 359.49261 * 24 7 6 26 26 H 1.08999 * 109.46742 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47023 * 299.99164 * 1 2 3 28 28 H 1.08992 * 109.47308 * 59.99778 * 1 2 3 29 29 H 1.09004 * 109.46937 * 240.00356 * 2 1 3 30 30 H 1.08997 * 109.47225 * 120.00708 * 2 1 3 31 31 H 1.09000 * 109.46629 * 60.00595 * 3 2 1 32 32 H 1.08992 * 109.47351 * 300.00196 * 3 2 1 33 33 H 1.08005 * 119.99901 * 359.97438 * 5 4 3 34 34 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47107 * 215.00120 * 12 11 8 36 36 H 1.08998 * 109.47122 * 335.00235 * 12 11 8 37 37 H 0.97010 * 119.99744 * 180.02562 * 16 15 13 38 38 H 1.09006 * 109.46765 * 0.02562 * 21 11 8 39 39 H 1.08998 * 109.47268 * 60.00919 * 22 21 11 40 40 H 1.09003 * 109.47129 * 180.02562 * 22 21 11 41 41 H 1.09000 * 109.47909 * 300.00202 * 22 21 11 42 42 H 1.09004 * 109.46820 * 60.00581 * 23 21 11 43 43 H 1.09001 * 109.47274 * 179.97438 * 23 21 11 44 44 H 1.08992 * 109.47375 * 299.99906 * 23 21 11 45 45 H 1.08004 * 119.99572 * 179.72682 * 24 7 6 46 46 H 1.08004 * 120.00400 * 180.25458 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.2377 1.4429 -1.1980 6 6 5.6200 1.4434 -1.1987 7 6 6.3117 1.4430 -0.0019 8 16 8.0737 1.4429 -0.0027 9 8 8.4755 0.8981 1.2467 10 8 8.4744 0.8989 -1.2527 11 7 8.5639 3.0247 -0.0024 12 6 8.7802 3.7247 -1.2710 13 6 7.5342 4.4862 -1.6433 14 1 6.6677 4.4518 -0.9997 15 6 7.5000 5.2260 -2.8064 16 7 8.5549 5.2675 -3.5905 17 14 5.9552 6.1693 -3.2683 18 1 6.0200 7.5371 -2.6936 19 1 5.8531 6.2581 -4.7471 20 1 4.7646 5.4626 -2.7314 21 6 8.7813 3.7241 1.2664 22 6 10.2350 4.1944 1.3469 23 6 7.8485 4.9340 1.3482 24 6 5.6210 1.4368 1.1956 25 6 4.2388 1.4416 1.1962 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.6972 1.4427 -2.1331 34 1 6.1596 1.4432 -2.1342 35 1 9.6129 4.4201 -1.1650 36 1 9.0097 2.9995 -2.0517 37 1 8.5310 5.7882 -4.4086 38 1 8.5724 3.0471 2.0948 39 1 10.4443 4.8713 0.5186 40 1 10.3969 4.7144 2.2911 41 1 10.8996 3.3325 1.2886 42 1 6.8129 4.5989 1.2909 43 1 8.0100 5.4541 2.2924 44 1 8.0578 5.6108 0.5199 45 1 6.1615 1.4320 2.1306 46 1 3.6991 1.4409 2.1317 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530551.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:45 Heat of formation + Delta-G solvation = -88.331717 kcal Electronic energy + Delta-G solvation = -26812.970057 eV Core-core repulsion = 23214.060754 eV Total energy + Delta-G solvation = -3598.909303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.39077 -38.49596 -38.26382 -36.90414 -36.09345 -34.76163 -32.25361 -32.19278 -31.99411 -28.83294 -27.91885 -27.56848 -24.72725 -23.82742 -23.46478 -21.97591 -21.68858 -19.87677 -18.96958 -18.61262 -18.29553 -17.21556 -16.62326 -16.54714 -16.19596 -15.54170 -15.44310 -15.21263 -14.99185 -14.76933 -14.57916 -14.45138 -14.07148 -14.03172 -13.73911 -13.51481 -13.38391 -13.16761 -13.00694 -12.94879 -12.93403 -12.69226 -12.62046 -12.40770 -12.34265 -12.16869 -12.14745 -12.10257 -12.06277 -11.65044 -11.52133 -11.45799 -11.32924 -10.52826 -10.07514 -9.97710 -9.70003 -8.12555 -6.22260 -0.51291 -0.11429 0.36875 1.40360 1.42088 1.51136 2.03883 2.43191 2.54990 2.85194 3.19590 3.34574 3.70786 3.78598 3.93942 3.97846 4.14543 4.20774 4.35029 4.35718 4.39029 4.46245 4.52146 4.59247 4.73201 4.75431 4.90005 4.93271 4.94304 4.99960 5.02105 5.12350 5.15548 5.18302 5.18923 5.23638 5.28306 5.28981 5.44377 5.45479 5.54747 5.59117 5.73424 5.84912 5.92907 6.02510 6.17095 6.88023 7.45349 8.95758 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010412 B = 0.005442 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.645963 B = 5143.927383 C = 6680.921341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.084 4.084 4 C -0.029 4.029 5 C -0.150 4.150 6 C -0.022 4.022 7 C -0.680 4.680 8 S 2.692 3.308 9 O -0.985 6.985 10 O -1.000 7.000 11 N -0.981 5.981 12 C 0.260 3.740 13 C -0.523 4.523 14 H 0.069 0.931 15 C 0.014 3.986 16 N -0.928 5.928 17 Si 0.946 3.054 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.265 1.265 21 C 0.138 3.862 22 C -0.155 4.155 23 C -0.150 4.150 24 C -0.029 4.029 25 C -0.140 4.140 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.118 0.882 35 H 0.031 0.969 36 H 0.016 0.984 37 H 0.263 0.737 38 H 0.100 0.900 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.081 0.919 44 H 0.055 0.945 45 H 0.150 0.850 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.896 -5.400 11.752 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.121 4.121 4 C -0.029 4.029 5 C -0.169 4.169 6 C -0.041 4.041 7 C -0.770 4.770 8 S 2.787 3.213 9 O -0.975 6.975 10 O -0.990 6.990 11 N -0.820 5.820 12 C 0.137 3.863 13 C -0.563 4.563 14 H 0.087 0.913 15 C -0.185 4.185 16 N -0.568 5.568 17 Si 0.772 3.228 18 H -0.199 1.199 19 H -0.214 1.214 20 H -0.189 1.189 21 C 0.033 3.967 22 C -0.214 4.214 23 C -0.209 4.209 24 C -0.048 4.048 25 C -0.158 4.158 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.159 0.841 34 H 0.136 0.864 35 H 0.049 0.951 36 H 0.035 0.965 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.167 0.833 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.258 -6.062 11.583 17.922 hybrid contribution -0.759 0.902 -1.150 1.647 sum -13.017 -5.159 10.434 17.462 Atomic orbital electron populations 1.21763 0.94280 1.02249 1.02384 1.21492 0.96784 0.94871 1.02344 1.20828 0.88115 0.98667 1.04491 1.20547 0.97521 0.92209 0.92650 1.21368 0.93280 1.02720 0.99503 1.20916 0.95764 0.91112 0.96340 1.30706 1.26246 1.19566 1.00445 1.01433 0.74769 0.73011 0.72107 1.93472 1.82290 1.77559 1.44201 1.93489 1.82349 1.77922 1.45276 1.57367 1.81300 1.29997 1.13328 1.18757 0.96867 0.91929 0.78789 1.21786 0.99878 1.28612 1.05989 0.91297 1.25664 0.98696 0.97784 0.96326 1.70057 1.30760 1.42209 1.13822 0.85730 0.80622 0.79336 0.77130 1.19940 1.21428 1.18914 1.21021 0.96722 0.95136 0.83863 1.22095 0.94936 1.01380 1.02972 1.22116 0.98561 0.97827 1.02386 1.21119 0.95757 0.91974 0.95930 1.21456 0.93317 1.01917 0.99143 0.92128 0.91821 0.92522 0.92542 0.91524 0.88792 0.90214 0.84056 0.86365 0.95072 0.96549 0.92797 0.88204 0.93234 0.88917 0.93092 0.93371 0.90041 0.92585 0.83267 0.81927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.12 -1.79 5.92 30.60 0.18 -1.61 16 3 C -0.08 -1.44 5.34 29.85 0.16 -1.28 16 4 C -0.03 -0.71 5.13 -19.87 -0.10 -0.82 16 5 C -0.15 -4.52 9.70 22.27 0.22 -4.30 16 6 C -0.02 -0.81 9.52 22.27 0.21 -0.60 16 7 C -0.68 -24.93 5.97 22.27 0.13 -24.80 16 8 S 2.69 111.69 5.69 -56.49 -0.32 111.37 16 9 O -0.98 -39.85 15.84 -128.00 -2.03 -41.88 16 10 O -1.00 -48.98 15.83 -128.00 -2.03 -51.00 16 11 N -0.98 -40.89 2.73 -497.43 -1.36 -42.24 16 12 C 0.26 13.03 5.01 85.63 0.43 13.46 16 13 C -0.52 -26.96 7.53 25.60 0.19 -26.76 16 14 H 0.07 3.43 7.08 -2.91 -0.02 3.41 16 15 C 0.01 0.77 5.46 84.66 0.46 1.23 16 16 N -0.93 -53.53 13.29 21.45 0.28 -53.25 16 17 Si 0.95 42.27 29.54 68.60 2.03 44.30 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 21 C 0.14 4.69 3.24 44.99 0.15 4.83 16 22 C -0.15 -4.81 9.16 71.98 0.66 -4.15 16 23 C -0.15 -4.84 8.21 71.98 0.59 -4.24 16 24 C -0.03 -0.84 9.52 22.27 0.21 -0.63 16 25 C -0.14 -3.37 9.70 22.27 0.22 -3.15 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.30 8.09 -2.39 -0.02 1.28 16 32 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 33 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 34 H 0.12 4.85 7.62 -2.91 -0.02 4.83 16 35 H 0.03 1.63 6.45 -2.39 -0.02 1.62 16 36 H 0.02 0.94 6.91 -2.39 -0.02 0.92 16 37 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 38 H 0.10 3.02 6.91 -2.38 -0.02 3.00 16 39 H 0.05 1.72 6.69 -2.39 -0.02 1.71 16 40 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.05 1.56 7.93 -2.39 -0.02 1.54 16 43 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.06 2.14 6.65 -2.39 -0.02 2.12 16 45 H 0.15 3.84 7.61 -2.91 -0.02 3.82 16 46 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -67.46 383.15 1.94 -65.51 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.95 Total: 21.10 kcal Atomic # 6 Polarization: -58.33 SS G_CDS: 4.42 Total: -53.91 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -1.07 Total: -95.49 kcal Atomic # 8 Polarization: -88.83 SS G_CDS: -4.05 Total: -92.88 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 111.69 SS G_CDS: -0.32 Total: 111.37 kcal Total: -67.46 1.94 -65.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530551.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.818 kcal (2) G-P(sol) polarization free energy of solvation -67.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds