Wall clock time and date at job start Tue Mar 31 2020 13:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38251 * 120.00263 * 2 1 4 4 C 1.38209 * 120.00401 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99901 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99947 * 179.97438 * 5 4 3 7 7 C 1.38216 * 120.00212 * 359.97438 * 5 4 3 8 8 S 1.76194 * 120.00226 * 179.97438 * 7 5 4 9 9 O 1.42101 * 106.40383 * 182.75570 * 8 7 5 10 10 O 1.42097 * 106.40280 * 49.83082 * 8 7 5 11 11 N 1.65607 * 107.21619 * 296.29260 * 8 7 5 12 12 C 1.46498 * 119.99818 * 276.20152 * 11 8 7 13 13 C 1.50695 * 109.47133 * 95.00231 * 12 11 8 14 14 H 1.08001 * 120.00120 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00175 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99556 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00126 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47146 * 59.99484 * 17 15 13 19 19 H 1.48501 * 109.47109 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46841 * 299.99566 * 17 15 13 21 21 C 1.46503 * 119.99966 * 96.48076 * 11 8 7 22 22 C 1.52993 * 109.47310 * 112.73958 * 21 11 8 23 23 C 1.53000 * 109.47380 * 174.99853 * 22 21 11 24 24 C 1.53010 * 109.47033 * 294.99733 * 22 21 11 25 25 C 1.38214 * 120.00106 * 180.27899 * 2 1 3 26 26 H 1.08999 * 109.47405 * 90.00172 * 1 2 3 27 27 H 1.09003 * 109.47110 * 210.00089 * 1 2 3 28 28 H 1.09002 * 109.46788 * 329.99893 * 1 2 3 29 29 H 1.08000 * 120.00014 * 0.02562 * 3 2 1 30 30 H 1.08003 * 120.00500 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47057 * 264.03545 * 6 5 4 32 32 H 1.08994 * 109.47380 * 24.03743 * 6 5 4 33 33 H 1.08998 * 109.47217 * 144.03587 * 6 5 4 34 34 H 1.09006 * 109.46828 * 215.00262 * 12 11 8 35 35 H 1.09004 * 109.46921 * 334.99876 * 12 11 8 36 36 H 0.97007 * 119.99735 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.46546 * 232.73756 * 21 11 8 38 38 H 1.08997 * 109.47058 * 352.73437 * 21 11 8 39 39 H 1.09005 * 109.47338 * 54.99339 * 22 21 11 40 40 H 1.09001 * 109.46602 * 59.99581 * 23 22 21 41 41 H 1.08998 * 109.46921 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.46481 * 300.00068 * 23 22 21 43 43 H 1.08997 * 109.46839 * 300.00227 * 24 22 21 44 44 H 1.09004 * 109.46881 * 60.00232 * 24 22 21 45 45 H 1.09001 * 109.47068 * 179.97438 * 24 22 21 46 46 H 1.08000 * 119.99901 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 6 3.5806 -1.1970 -0.0016 8 16 4.4616 -2.7229 -0.0037 9 8 3.4830 -3.7512 -0.0687 10 8 5.4249 -2.6315 1.0369 11 7 5.3119 -2.7961 -1.4229 12 6 4.6580 -3.2711 -2.6448 13 6 4.1453 -2.0922 -3.4310 14 1 4.2914 -1.0894 -3.0576 15 6 3.4886 -2.2938 -4.6265 16 7 3.3102 -3.5150 -5.0809 17 14 2.8537 -0.8324 -5.6014 18 1 3.9895 0.0540 -5.9610 19 1 2.1908 -1.3139 -6.8400 20 1 1.8764 -0.0754 -4.7786 21 6 6.7196 -2.3916 -1.4552 22 6 7.5958 -3.6157 -1.7281 23 6 9.0526 -3.1753 -1.8856 24 6 7.4828 -4.5949 -0.5578 25 6 2.1981 -1.1969 -0.0058 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1326 -0.0010 31 1 6.1413 -0.1063 -1.0252 32 1 6.1424 0.9383 0.4159 33 1 6.1425 -0.8320 0.6001 34 1 5.3759 -3.8262 -3.2488 35 1 3.8246 -3.9224 -2.3812 36 1 2.8485 -3.6569 -5.9222 37 1 6.8679 -1.6552 -2.2450 38 1 6.9942 -1.9549 -0.4950 39 1 7.2628 -4.1041 -2.6439 40 1 9.3855 -2.6869 -0.9697 41 1 9.6769 -4.0474 -2.0796 42 1 9.1330 -2.4777 -2.7193 43 1 7.8158 -4.1066 0.3580 44 1 6.4450 -4.9088 -0.4456 45 1 8.1068 -5.4673 -0.7524 46 1 1.6581 -2.1322 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043419573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:39 Heat of formation + Delta-G solvation = -65.348899 kcal Electronic energy + Delta-G solvation = -27661.155850 eV Core-core repulsion = 24063.243157 eV Total energy + Delta-G solvation = -3597.912693 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.23676 -37.30955 -36.63040 -35.25572 -33.87939 -33.55986 -32.12374 -30.95030 -29.20426 -27.43506 -26.80808 -25.20562 -24.53250 -23.14812 -22.38937 -21.06885 -19.65012 -18.12368 -17.16023 -16.72040 -16.23373 -15.89576 -15.49282 -15.09013 -14.60987 -14.36487 -14.09030 -13.88991 -13.82359 -13.67421 -13.10516 -12.78348 -12.64045 -12.43915 -12.27871 -12.13895 -12.07092 -11.96620 -11.84646 -11.58608 -11.50011 -11.23978 -11.19039 -11.09803 -11.04151 -10.97207 -10.71595 -10.61662 -10.46337 -10.25976 -10.09147 -9.88768 -9.70937 -9.00348 -8.47841 -8.29645 -7.99691 -6.10075 -4.15571 0.99784 1.26210 1.57376 3.25793 3.31037 3.32976 3.53922 3.83308 4.33078 4.37860 4.77573 4.95285 5.00898 5.16239 5.20220 5.25400 5.30095 5.32341 5.39282 5.43229 5.62377 5.69503 5.71604 5.75037 5.85232 5.91622 5.93574 6.04849 6.09082 6.14895 6.15910 6.18235 6.24798 6.35665 6.39214 6.43091 6.57156 6.58469 6.65409 6.66411 6.81927 7.15547 7.35461 7.42509 7.63639 7.87114 8.16010 8.88650 9.50170 10.97862 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009178 B = 0.007495 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.093434 B = 3735.160922 C = 5386.348600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.117 4.117 3 C -0.070 4.070 4 C -0.144 4.144 5 C 0.018 3.982 6 C -0.176 4.176 7 C -0.655 4.655 8 S 2.690 3.310 9 O -0.963 6.963 10 O -0.976 6.976 11 N -0.977 5.977 12 C 0.246 3.754 13 C -0.537 4.537 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.890 5.890 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.123 3.877 22 C -0.113 4.113 23 C -0.142 4.142 24 C -0.147 4.147 25 C -0.010 4.010 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.264 0.736 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.591 6.686 9.140 11.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.118 4.118 3 C -0.089 4.089 4 C -0.163 4.163 5 C 0.017 3.983 6 C -0.232 4.232 7 C -0.741 4.741 8 S 2.781 3.219 9 O -0.953 6.953 10 O -0.966 6.966 11 N -0.816 5.816 12 C 0.124 3.876 13 C -0.576 4.576 14 H 0.079 0.921 15 C -0.136 4.136 16 N -0.528 5.528 17 Si 0.717 3.283 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.003 4.003 22 C -0.133 4.133 23 C -0.200 4.200 24 C -0.204 4.204 25 C -0.029 4.029 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.473 5.956 9.627 11.841 hybrid contribution -0.818 1.647 -1.203 2.198 sum 2.655 7.603 8.424 11.654 Atomic orbital electron populations 1.20772 0.90926 1.02531 1.02634 1.19937 0.96271 0.93193 1.02436 1.21174 0.94281 0.97419 0.95996 1.21039 0.94272 0.97437 1.03559 1.19403 0.95573 0.91887 0.91484 1.21865 0.91139 1.05584 1.04610 1.30924 1.06212 1.20314 1.16629 1.01866 0.73182 0.73839 0.73018 1.93526 1.61382 1.53860 1.86554 1.93461 1.60633 1.87314 1.55220 1.57253 1.18308 1.79329 1.26707 1.19219 0.93295 0.95146 0.79913 1.21499 1.36989 0.93459 1.05667 0.92114 1.24897 0.95773 0.95622 0.97352 1.69921 1.41956 1.19786 1.21143 0.86694 0.79231 0.82919 0.79439 1.20228 1.21187 1.20210 1.21536 0.80012 0.96458 1.02284 1.21474 0.94906 0.97029 0.99923 1.21761 0.95701 1.01078 1.01469 1.21836 1.01450 0.98857 0.98276 1.20783 0.92064 0.98693 0.91358 0.90950 0.91350 0.91784 0.85929 0.85711 0.88948 0.90534 0.87779 0.93737 0.93238 0.92592 0.90845 0.89894 0.89936 0.92869 0.92858 0.92569 0.92279 0.93300 0.93021 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 36.00 0.36 -1.05 16 2 C -0.12 -1.88 5.88 -104.63 -0.62 -2.50 16 3 C -0.07 -1.03 9.70 -39.59 -0.38 -1.41 16 4 C -0.14 -2.17 9.68 -39.59 -0.38 -2.56 16 5 C 0.02 0.30 5.88 -104.62 -0.61 -0.31 16 6 C -0.18 -2.56 7.97 36.01 0.29 -2.27 16 7 C -0.66 -12.60 5.90 -39.58 -0.23 -12.84 16 8 S 2.69 54.76 5.02 -107.50 -0.54 54.22 16 9 O -0.96 -22.35 15.67 -57.17 -0.90 -23.25 16 10 O -0.98 -19.19 14.29 -57.17 -0.82 -20.01 16 11 N -0.98 -19.74 2.25 -115.67 -0.26 -20.00 16 12 C 0.25 5.97 5.34 -5.20 -0.03 5.94 16 13 C -0.54 -13.99 9.38 -34.44 -0.32 -14.32 16 14 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 15 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -25.25 13.29 55.43 0.74 -24.51 16 17 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.12 2.07 3.25 -4.04 -0.01 2.05 16 22 C -0.11 -1.75 2.95 -90.62 -0.27 -2.02 16 23 C -0.14 -1.75 9.19 37.16 0.34 -1.41 16 24 C -0.15 -2.26 9.08 37.16 0.34 -1.92 16 25 C -0.01 -0.18 9.21 -39.58 -0.36 -0.55 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 28 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 31 H 0.09 1.32 6.25 -51.93 -0.32 1.00 16 32 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 33 H 0.10 1.59 3.93 -51.93 -0.20 1.38 16 34 H 0.04 1.11 6.73 -51.93 -0.35 0.76 16 35 H 0.05 1.33 7.00 -51.93 -0.36 0.97 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 37 H 0.07 1.21 7.68 -51.93 -0.40 0.81 16 38 H 0.08 1.26 4.66 -51.93 -0.24 1.01 16 39 H 0.08 1.41 6.80 -51.93 -0.35 1.06 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.84 7.68 -51.93 -0.40 0.44 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.14 2.55 7.34 -52.49 -0.39 2.17 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -31.01 373.65 -10.37 -41.38 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.21 Total: 4.01 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: -2.00 Total: -33.45 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.48 Total: -44.51 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -1.71 Total: -43.26 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 54.76 SS G_CDS: -0.54 Total: 54.22 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.01 -10.37 -41.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.966 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds