Wall clock time and date at job start Tue Mar 31 2020 13:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38251 * 120.00263 * 2 1 4 4 C 1.38209 * 120.00401 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99901 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99947 * 179.97438 * 5 4 3 7 7 C 1.38216 * 120.00212 * 359.97438 * 5 4 3 8 8 S 1.76194 * 120.00226 * 179.97438 * 7 5 4 9 9 O 1.42101 * 106.40383 * 182.75570 * 8 7 5 10 10 O 1.42097 * 106.40280 * 49.83082 * 8 7 5 11 11 N 1.65607 * 107.21619 * 296.29260 * 8 7 5 12 12 C 1.46498 * 119.99818 * 276.20152 * 11 8 7 13 13 C 1.50695 * 109.47133 * 95.00231 * 12 11 8 14 14 H 1.08001 * 120.00120 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00175 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99556 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00126 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47146 * 59.99484 * 17 15 13 19 19 H 1.48501 * 109.47109 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46841 * 299.99566 * 17 15 13 21 21 C 1.46503 * 119.99966 * 96.48076 * 11 8 7 22 22 C 1.52993 * 109.47310 * 112.73958 * 21 11 8 23 23 C 1.53000 * 109.47380 * 174.99853 * 22 21 11 24 24 C 1.53010 * 109.47033 * 294.99733 * 22 21 11 25 25 C 1.38214 * 120.00106 * 180.27899 * 2 1 3 26 26 H 1.08999 * 109.47405 * 90.00172 * 1 2 3 27 27 H 1.09003 * 109.47110 * 210.00089 * 1 2 3 28 28 H 1.09002 * 109.46788 * 329.99893 * 1 2 3 29 29 H 1.08000 * 120.00014 * 0.02562 * 3 2 1 30 30 H 1.08003 * 120.00500 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47057 * 264.03545 * 6 5 4 32 32 H 1.08994 * 109.47380 * 24.03743 * 6 5 4 33 33 H 1.08998 * 109.47217 * 144.03587 * 6 5 4 34 34 H 1.09006 * 109.46828 * 215.00262 * 12 11 8 35 35 H 1.09004 * 109.46921 * 334.99876 * 12 11 8 36 36 H 0.97007 * 119.99735 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.46546 * 232.73756 * 21 11 8 38 38 H 1.08997 * 109.47058 * 352.73437 * 21 11 8 39 39 H 1.09005 * 109.47338 * 54.99339 * 22 21 11 40 40 H 1.09001 * 109.46602 * 59.99581 * 23 22 21 41 41 H 1.08998 * 109.46921 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.46481 * 300.00068 * 23 22 21 43 43 H 1.08997 * 109.46839 * 300.00227 * 24 22 21 44 44 H 1.09004 * 109.46881 * 60.00232 * 24 22 21 45 45 H 1.09001 * 109.47068 * 179.97438 * 24 22 21 46 46 H 1.08000 * 119.99901 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 6 3.5806 -1.1970 -0.0016 8 16 4.4616 -2.7229 -0.0037 9 8 3.4830 -3.7512 -0.0687 10 8 5.4249 -2.6315 1.0369 11 7 5.3119 -2.7961 -1.4229 12 6 4.6580 -3.2711 -2.6448 13 6 4.1453 -2.0922 -3.4310 14 1 4.2914 -1.0894 -3.0576 15 6 3.4886 -2.2938 -4.6265 16 7 3.3102 -3.5150 -5.0809 17 14 2.8537 -0.8324 -5.6014 18 1 3.9895 0.0540 -5.9610 19 1 2.1908 -1.3139 -6.8400 20 1 1.8764 -0.0754 -4.7786 21 6 6.7196 -2.3916 -1.4552 22 6 7.5958 -3.6157 -1.7281 23 6 9.0526 -3.1753 -1.8856 24 6 7.4828 -4.5949 -0.5578 25 6 2.1981 -1.1969 -0.0058 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1326 -0.0010 31 1 6.1413 -0.1063 -1.0252 32 1 6.1424 0.9383 0.4159 33 1 6.1425 -0.8320 0.6001 34 1 5.3759 -3.8262 -3.2488 35 1 3.8246 -3.9224 -2.3812 36 1 2.8485 -3.6569 -5.9222 37 1 6.8679 -1.6552 -2.2450 38 1 6.9942 -1.9549 -0.4950 39 1 7.2628 -4.1041 -2.6439 40 1 9.3855 -2.6869 -0.9697 41 1 9.6769 -4.0474 -2.0796 42 1 9.1330 -2.4777 -2.7193 43 1 7.8158 -4.1066 0.3580 44 1 6.4450 -4.9088 -0.4456 45 1 8.1068 -5.4673 -0.7524 46 1 1.6581 -2.1322 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043419573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:39 Heat of formation + Delta-G solvation = -83.067395 kcal Electronic energy + Delta-G solvation = -27661.924182 eV Core-core repulsion = 24063.243157 eV Total energy + Delta-G solvation = -3598.681025 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.45900 -38.78812 -38.26609 -36.93245 -35.43681 -34.88675 -33.91693 -32.20469 -30.34590 -29.24126 -27.97194 -26.67442 -25.75466 -24.60525 -24.06954 -22.31331 -20.98004 -19.70998 -18.71033 -18.54425 -17.90463 -17.41498 -16.74542 -16.64855 -16.14475 -15.82995 -15.46318 -15.28272 -15.10060 -14.93068 -14.40523 -14.22196 -13.97693 -13.85685 -13.75813 -13.54121 -13.33221 -13.30919 -13.04951 -13.03335 -12.95479 -12.87925 -12.71517 -12.62045 -12.40714 -12.37689 -12.25893 -12.15182 -11.97676 -11.80420 -11.54417 -11.49491 -11.26004 -10.57322 -10.27363 -9.70759 -9.49038 -8.16941 -6.29426 -0.52781 -0.08917 0.32649 1.38821 1.40347 1.47815 2.01856 2.40185 2.50752 2.79144 3.14421 3.37853 3.74747 3.83428 3.88931 3.95012 4.11206 4.16925 4.22375 4.29242 4.40627 4.50441 4.61982 4.68501 4.72162 4.76750 4.79980 4.83986 4.87100 4.94399 4.98357 5.07785 5.08734 5.14068 5.16289 5.27157 5.30084 5.32693 5.37657 5.42162 5.47387 5.48181 5.62484 5.76189 5.96165 5.96959 6.10792 6.81423 7.39759 8.90840 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009178 B = 0.007495 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.093434 B = 3735.160922 C = 5386.348600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.125 4.125 3 C -0.066 4.066 4 C -0.143 4.143 5 C 0.002 3.998 6 C -0.178 4.178 7 C -0.678 4.678 8 S 2.693 3.307 9 O -1.005 7.005 10 O -0.974 6.974 11 N -0.978 5.978 12 C 0.264 3.736 13 C -0.537 4.537 14 H 0.066 0.934 15 C 0.014 3.986 16 N -0.927 5.927 17 Si 0.951 3.049 18 H -0.263 1.263 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.115 3.885 22 C -0.115 4.115 23 C -0.135 4.135 24 C -0.148 4.148 25 C -0.045 4.045 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.031 0.969 35 H 0.012 0.988 36 H 0.265 0.735 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.018 0.982 45 H 0.071 0.929 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.449 10.466 9.460 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.126 4.126 3 C -0.084 4.084 4 C -0.161 4.161 5 C 0.000 4.000 6 C -0.234 4.234 7 C -0.767 4.767 8 S 2.788 3.212 9 O -0.996 6.996 10 O -0.965 6.965 11 N -0.816 5.816 12 C 0.141 3.859 13 C -0.576 4.576 14 H 0.084 0.916 15 C -0.185 4.185 16 N -0.566 5.566 17 Si 0.776 3.224 18 H -0.188 1.188 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.009 4.009 22 C -0.135 4.135 23 C -0.193 4.193 24 C -0.205 4.205 25 C -0.065 4.065 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.182 0.818 30 H 0.182 0.818 31 H 0.112 0.888 32 H 0.131 0.869 33 H 0.111 0.889 34 H 0.049 0.951 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.037 0.963 45 H 0.090 0.910 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.374 9.710 9.965 14.585 hybrid contribution -1.099 0.503 -1.216 1.714 sum 3.275 10.213 8.749 13.841 Atomic orbital electron populations 1.20854 0.88761 1.04241 1.03018 1.20354 0.98049 0.92752 1.01449 1.21721 0.94548 0.98344 0.93764 1.21556 0.94800 0.98050 1.01702 1.19818 0.96962 0.91818 0.91375 1.21926 0.89620 1.07094 1.04731 1.30622 1.06499 1.20064 1.19469 1.01460 0.72789 0.74059 0.72926 1.93464 1.62643 1.56442 1.87067 1.93447 1.60558 1.87589 1.54872 1.57077 1.19754 1.79725 1.25034 1.18706 0.91970 0.94251 0.81006 1.21750 1.36406 0.93879 1.05589 0.91619 1.25718 0.96143 0.98107 0.98555 1.70053 1.43055 1.21873 1.21654 0.85711 0.78950 0.79813 0.77910 1.18805 1.21060 1.19843 1.21850 0.78219 0.97298 1.03559 1.21488 0.96976 0.96370 0.98690 1.21714 0.93083 1.01879 1.02610 1.21861 1.00016 0.99850 0.98767 1.20900 0.92318 0.99524 0.93765 0.91068 0.91273 0.88579 0.81762 0.81796 0.88824 0.86939 0.88935 0.95058 0.96983 0.92614 0.90328 0.87900 0.92392 0.91138 0.91603 0.92019 0.91346 0.96255 0.91045 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.61 10.01 71.23 0.71 -1.90 16 2 C -0.13 -3.82 5.88 -19.87 -0.12 -3.94 16 3 C -0.07 -1.68 9.70 22.27 0.22 -1.46 16 4 C -0.14 -3.75 9.68 22.27 0.22 -3.53 16 5 C 0.00 0.06 5.88 -19.86 -0.12 -0.06 16 6 C -0.18 -4.74 7.97 71.24 0.57 -4.17 16 7 C -0.68 -26.41 5.90 22.27 0.13 -26.28 16 8 S 2.69 114.69 5.02 -56.49 -0.28 114.41 16 9 O -1.01 -50.49 15.67 -128.00 -2.01 -52.50 16 10 O -0.97 -39.13 14.29 -128.00 -1.83 -40.96 16 11 N -0.98 -41.02 2.25 -519.86 -1.17 -42.19 16 12 C 0.26 13.54 5.34 85.63 0.46 14.00 16 13 C -0.54 -28.58 9.38 25.60 0.24 -28.34 16 14 H 0.07 3.37 7.81 -2.91 -0.02 3.34 16 15 C 0.01 0.78 5.46 84.65 0.46 1.24 16 16 N -0.93 -54.19 13.29 21.45 0.28 -53.90 16 17 Si 0.95 42.83 29.54 68.60 2.03 44.86 16 18 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 C 0.12 3.87 3.25 86.38 0.28 4.15 16 22 C -0.11 -3.56 2.95 -10.79 -0.03 -3.59 16 23 C -0.13 -3.07 9.19 71.98 0.66 -2.40 16 24 C -0.15 -4.59 9.08 71.99 0.65 -3.93 16 25 C -0.05 -1.74 9.21 22.27 0.20 -1.54 16 26 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 27 H 0.07 1.57 8.09 -2.39 -0.02 1.55 16 28 H 0.10 1.60 8.09 -2.39 -0.02 1.58 16 29 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 30 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.09 2.47 6.25 -2.39 -0.01 2.45 16 32 H 0.11 2.13 8.04 -2.39 -0.02 2.11 16 33 H 0.09 2.68 3.93 -2.39 -0.01 2.67 16 34 H 0.03 1.67 6.73 -2.38 -0.02 1.65 16 35 H 0.01 0.71 7.00 -2.39 -0.02 0.69 16 36 H 0.26 14.71 8.31 -92.70 -0.77 13.93 16 37 H 0.08 2.53 7.68 -2.39 -0.02 2.51 16 38 H 0.10 3.02 4.66 -2.39 -0.01 3.01 16 39 H 0.06 2.07 6.80 -2.38 -0.02 2.05 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.02 0.68 7.68 -2.38 -0.02 0.66 16 45 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.12 4.85 7.34 -2.91 -0.02 4.83 16 Total: -1.00 -70.26 373.65 2.53 -67.73 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.96 Total: 24.32 kcal Atomic # 6 Polarization: -66.32 SS G_CDS: 4.54 Total: -61.78 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -0.88 Total: -96.09 kcal Atomic # 8 Polarization: -89.63 SS G_CDS: -3.83 Total: -93.46 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 114.69 SS G_CDS: -0.28 Total: 114.41 kcal Total: -70.26 2.53 -67.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.333 kcal (2) G-P(sol) polarization free energy of solvation -70.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds