Wall clock time and date at job start Tue Mar 31 2020 14:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34512 * 125.78900 * 2 1 4 4 C 1.41390 * 106.83764 * 180.23237 * 3 2 1 5 5 C 1.34514 * 106.84190 * 359.56976 * 4 3 2 6 6 C 1.50693 * 125.79377 * 180.11697 * 5 4 3 7 7 N 1.46498 * 109.46948 * 87.38834 * 6 5 4 8 8 C 1.34777 * 120.00286 * 236.54643 * 7 6 5 9 9 O 1.21550 * 120.00584 * 173.91184 * 8 7 6 10 10 C 1.47884 * 119.99862 * 353.90774 * 8 7 6 11 11 C 1.39923 * 120.02443 * 42.22036 * 10 8 7 12 12 C 1.38330 * 120.35973 * 179.97438 * 11 10 8 13 13 C 1.37752 * 120.41227 * 0.02562 * 12 11 10 14 14 C 1.40752 * 120.03984 * 0.02562 * 13 12 11 15 15 C 1.41440 * 120.17662 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00205 * 32.71824 * 15 14 13 17 17 C 1.39935 * 119.99774 * 212.71594 * 15 14 13 18 18 N 1.30834 * 119.99952 * 6.69853 * 17 15 14 19 19 Si 1.86796 * 120.00062 * 186.69810 * 17 15 14 20 20 H 1.48505 * 109.47227 * 94.99523 * 19 17 15 21 21 H 1.48503 * 109.47416 * 214.99907 * 19 17 15 22 22 H 1.48500 * 109.47109 * 334.99825 * 19 17 15 23 23 C 1.38990 * 120.02985 * 221.94550 * 10 8 7 24 24 C 1.46501 * 119.99870 * 56.55056 * 7 6 5 25 25 C 1.53005 * 117.49514 * 196.78825 * 24 7 6 26 26 C 1.53000 * 60.00102 * 252.51038 * 25 24 7 27 27 O 1.34300 * 125.78545 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47423 * 89.99711 * 1 2 3 29 29 H 1.08997 * 109.47259 * 209.99900 * 1 2 3 30 30 H 1.09003 * 109.46848 * 329.99920 * 1 2 3 31 31 H 1.07995 * 126.58406 * 359.96503 * 3 2 1 32 32 H 1.08002 * 126.57928 * 179.74041 * 4 3 2 33 33 H 1.08996 * 109.47522 * 207.38941 * 6 5 4 34 34 H 1.09005 * 109.47025 * 327.39010 * 6 5 4 35 35 H 1.07996 * 119.81871 * 359.95565 * 11 10 8 36 36 H 1.08001 * 119.79297 * 180.02562 * 12 11 10 37 37 H 1.08004 * 119.98160 * 179.97438 * 13 12 11 38 38 H 0.97001 * 119.99634 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.20440 * 359.97438 * 23 10 8 40 40 H 1.08997 * 115.55223 * 342.49396 * 24 7 6 41 41 H 1.08999 * 117.50125 * 0.02562 * 25 24 7 42 42 H 1.09000 * 117.49592 * 145.02141 * 25 24 7 43 43 H 1.09000 * 117.49947 * 252.51340 * 26 25 24 44 44 H 1.08995 * 117.50238 * 107.49269 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0055 5 6 3.5814 -0.7123 0.0012 6 6 4.7705 -1.6380 0.0012 7 7 5.1995 -1.8817 1.3806 8 6 6.4662 -1.6078 1.7508 9 8 6.7929 -1.7044 2.9176 10 6 7.4587 -1.1898 0.7373 11 6 7.0987 -0.2773 -0.2605 12 6 8.0217 0.1189 -1.2116 13 6 9.3054 -0.3804 -1.1881 14 6 9.6856 -1.3000 -0.1927 15 6 11.0027 -1.8149 -0.1661 16 1 11.8291 -1.2012 -0.4928 17 6 11.2349 -3.1195 0.2835 18 7 10.2261 -3.9073 0.5548 19 14 12.9852 -3.7364 0.4964 20 1 13.4062 -3.5534 1.9087 21 1 13.0485 -5.1775 0.1437 22 1 13.8924 -2.9686 -0.3939 23 6 8.7515 -1.6986 0.7785 24 6 4.2517 -2.4231 2.3577 25 6 4.6121 -2.2924 3.8389 26 6 4.6837 -3.6575 3.1519 27 8 2.2923 -1.0895 0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.9666 2.1204 -0.0005 32 1 4.5213 1.2432 -0.0109 33 1 4.4950 -2.5834 -0.4660 34 1 5.5869 -1.1808 -0.5579 35 1 6.0948 0.1196 -0.2884 36 1 7.7342 0.8240 -1.9775 37 1 10.0203 -0.0666 -1.9344 38 1 10.3871 -4.8115 0.8668 39 1 9.0352 -2.3995 1.5497 40 1 3.1991 -2.3421 2.0865 41 1 5.5542 -1.8031 4.0864 42 1 3.7965 -2.1251 4.5424 43 1 3.9151 -4.3884 3.4033 44 1 5.6729 -4.0668 2.9473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046284184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:47 Heat of formation + Delta-G solvation = 56.837545 kcal Electronic energy + Delta-G solvation = -27423.892047 eV Core-core repulsion = 23695.833805 eV Total energy + Delta-G solvation = -3728.058243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.57939 -40.04618 -37.51796 -35.92293 -34.83050 -33.54636 -33.16032 -31.77697 -30.09021 -29.58901 -28.18812 -25.56709 -24.40149 -23.55150 -22.13110 -21.87262 -21.10632 -20.99214 -20.17239 -18.86810 -17.59692 -16.74217 -16.56575 -15.83033 -15.69705 -15.35424 -15.00703 -14.82153 -14.33055 -13.95438 -13.76343 -13.41677 -13.20951 -13.13919 -12.98555 -12.79347 -12.60077 -12.53397 -12.38167 -12.25591 -11.88045 -11.59929 -11.25384 -11.18799 -11.17123 -10.75985 -10.57863 -10.41253 -10.10219 -10.01629 -9.82330 -9.71859 -9.32171 -8.70487 -8.31380 -8.17723 -7.67017 -7.49550 -6.80112 -4.51744 1.64632 2.17417 2.59533 2.72363 2.88423 3.05615 3.07501 3.10075 3.30487 3.60412 3.89520 4.23599 4.53032 4.62830 4.85191 4.98276 5.06632 5.14768 5.18571 5.23985 5.34298 5.41955 5.46883 5.49866 5.57133 5.74279 5.83737 5.88675 5.99248 6.00938 6.06440 6.15618 6.20359 6.31168 6.56247 6.60652 6.63743 6.89947 6.93186 7.07540 7.14565 7.22195 7.30695 7.55269 7.67170 7.74578 7.91533 8.07977 8.42493 8.73456 8.74557 8.78730 10.15178 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017417 B = 0.003563 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.282311 B = 7856.297767 C = 8968.960431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.021 4.021 3 C -0.211 4.211 4 C -0.190 4.190 5 C -0.021 4.021 6 C 0.150 3.850 7 N -0.579 5.579 8 C 0.576 3.424 9 O -0.532 6.532 10 C -0.124 4.124 11 C -0.235 4.235 12 C -0.095 4.095 13 C -0.204 4.204 14 C 0.106 3.894 15 C -0.461 4.461 16 H 0.081 0.919 17 C 0.071 3.929 18 N -0.801 5.801 19 Si 0.915 3.085 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.087 4.087 24 C 0.072 3.928 25 C -0.199 4.199 26 C -0.190 4.190 27 O -0.175 6.175 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.078 0.922 34 H 0.166 0.834 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.282 0.718 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.151 0.849 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.901 3.769 -1.292 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.230 4.230 4 C -0.210 4.210 5 C -0.072 4.072 6 C 0.029 3.971 7 N -0.310 5.310 8 C 0.369 3.631 9 O -0.410 6.410 10 C -0.127 4.127 11 C -0.254 4.254 12 C -0.113 4.113 13 C -0.224 4.224 14 C 0.103 3.897 15 C -0.491 4.491 16 H 0.099 0.901 17 C -0.146 4.146 18 N -0.427 5.427 19 Si 0.740 3.260 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.107 4.107 24 C -0.032 4.032 25 C -0.236 4.236 26 C -0.229 4.229 27 O -0.072 6.072 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.096 0.904 34 H 0.183 0.817 35 H 0.126 0.874 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.146 0.854 40 H 0.137 0.863 41 H 0.168 0.832 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.864 3.153 -0.606 15.207 hybrid contribution 0.527 -0.248 -0.006 0.582 sum -14.337 2.906 -0.612 14.641 Atomic orbital electron populations 1.20263 0.85369 1.03813 1.03297 1.22399 0.93891 0.84444 1.06387 1.21557 0.92741 0.99256 1.09414 1.21681 0.98244 0.94009 1.07091 1.22832 0.82816 0.95063 1.06502 1.21148 0.93107 0.98252 0.84620 1.47192 1.10239 1.64047 1.09542 1.18981 0.80825 0.74832 0.88504 1.90441 1.78785 1.53058 1.18751 1.19469 0.94581 1.02113 0.96579 1.20582 0.98781 1.05989 1.00090 1.20489 0.94024 0.99051 0.97732 1.21222 0.95550 1.05307 1.00339 1.17609 0.93327 0.89803 0.88921 1.19591 0.93491 0.97867 1.38129 0.90080 1.25916 0.99290 0.96818 0.92536 1.69735 1.32480 1.07625 1.32844 0.86180 0.81901 0.78355 0.79603 1.19325 1.20188 1.18570 1.21515 0.90372 1.00141 0.98635 1.21523 0.92638 1.00902 0.88140 1.24173 1.06163 1.00304 0.93000 1.23238 1.03128 0.91501 1.05003 1.83970 1.16535 1.35054 1.71598 0.90275 0.90751 0.89556 0.83663 0.83174 0.90386 0.81729 0.87392 0.88538 0.88357 0.90672 0.85353 0.86298 0.83218 0.90129 0.89050 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.42 36.01 0.38 -0.16 16 2 C -0.02 -0.25 7.32 -35.62 -0.26 -0.51 16 3 C -0.21 -2.60 10.81 -39.70 -0.43 -3.03 16 4 C -0.19 -2.71 10.20 -39.70 -0.40 -3.11 16 5 C -0.02 -0.32 6.02 -35.63 -0.21 -0.53 16 6 C 0.15 2.40 5.76 -5.20 -0.03 2.37 16 7 N -0.58 -10.49 3.00 -168.56 -0.51 -11.00 16 8 C 0.58 12.44 7.07 -12.31 -0.09 12.35 16 9 O -0.53 -12.55 12.90 5.32 0.07 -12.48 16 10 C -0.12 -2.82 5.39 -105.04 -0.57 -3.38 16 11 C -0.24 -4.70 7.44 -38.92 -0.29 -4.99 16 12 C -0.09 -1.90 10.01 -39.73 -0.40 -2.30 16 13 C -0.20 -4.62 9.78 -38.81 -0.38 -4.99 16 14 C 0.11 2.69 5.51 -106.87 -0.59 2.10 16 15 C -0.46 -11.75 9.05 -37.73 -0.34 -12.09 16 16 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 17 C 0.07 1.76 5.30 -17.34 -0.09 1.67 16 18 N -0.80 -20.49 10.93 55.55 0.61 -19.88 16 19 Si 0.92 18.52 29.56 -169.99 -5.03 13.49 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 23 C -0.09 -2.21 8.23 -38.44 -0.32 -2.52 16 24 C 0.07 1.19 6.26 -67.92 -0.43 0.77 16 25 C -0.20 -3.31 9.64 -26.73 -0.26 -3.56 16 26 C -0.19 -3.05 9.92 -26.73 -0.27 -3.32 16 27 O -0.17 -2.48 10.27 5.69 0.06 -2.42 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.15 2.07 6.84 -52.49 -0.36 1.72 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.17 2.75 3.09 -53.39 -0.17 2.59 16 35 H 0.11 1.87 3.93 -52.49 -0.21 1.66 16 36 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 37 H 0.10 2.07 8.06 -52.48 -0.42 1.64 16 38 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 39 H 0.13 3.56 6.41 -52.49 -0.34 3.22 16 40 H 0.12 1.78 7.31 -51.93 -0.38 1.40 16 41 H 0.15 2.96 4.88 -53.85 -0.26 2.70 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.10 1.81 7.91 -51.93 -0.41 1.39 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -28.31 361.65 -9.79 -38.10 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -5.47 Total: 14.00 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -4.97 Total: -25.26 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: 0.10 Total: -30.88 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.13 Total: -14.91 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.31 -9.79 -38.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046284184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.940 kcal (2) G-P(sol) polarization free energy of solvation -28.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds