Wall clock time and date at job start Tue Mar 31 2020 14:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34512 * 125.78900 * 2 1 4 4 C 1.41390 * 106.83764 * 180.23237 * 3 2 1 5 5 C 1.34514 * 106.84190 * 359.56976 * 4 3 2 6 6 C 1.50693 * 125.79377 * 180.11697 * 5 4 3 7 7 N 1.46498 * 109.46948 * 87.38834 * 6 5 4 8 8 C 1.34777 * 120.00286 * 236.54643 * 7 6 5 9 9 O 1.21550 * 120.00584 * 173.91184 * 8 7 6 10 10 C 1.47884 * 119.99862 * 353.90774 * 8 7 6 11 11 C 1.39923 * 120.02443 * 42.22036 * 10 8 7 12 12 C 1.38330 * 120.35973 * 179.97438 * 11 10 8 13 13 C 1.37752 * 120.41227 * 0.02562 * 12 11 10 14 14 C 1.40752 * 120.03984 * 0.02562 * 13 12 11 15 15 C 1.41440 * 120.17662 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00205 * 32.71824 * 15 14 13 17 17 C 1.39935 * 119.99774 * 212.71594 * 15 14 13 18 18 N 1.30834 * 119.99952 * 6.69853 * 17 15 14 19 19 Si 1.86796 * 120.00062 * 186.69810 * 17 15 14 20 20 H 1.48505 * 109.47227 * 94.99523 * 19 17 15 21 21 H 1.48503 * 109.47416 * 214.99907 * 19 17 15 22 22 H 1.48500 * 109.47109 * 334.99825 * 19 17 15 23 23 C 1.38990 * 120.02985 * 221.94550 * 10 8 7 24 24 C 1.46501 * 119.99870 * 56.55056 * 7 6 5 25 25 C 1.53005 * 117.49514 * 196.78825 * 24 7 6 26 26 C 1.53000 * 60.00102 * 252.51038 * 25 24 7 27 27 O 1.34300 * 125.78545 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47423 * 89.99711 * 1 2 3 29 29 H 1.08997 * 109.47259 * 209.99900 * 1 2 3 30 30 H 1.09003 * 109.46848 * 329.99920 * 1 2 3 31 31 H 1.07995 * 126.58406 * 359.96503 * 3 2 1 32 32 H 1.08002 * 126.57928 * 179.74041 * 4 3 2 33 33 H 1.08996 * 109.47522 * 207.38941 * 6 5 4 34 34 H 1.09005 * 109.47025 * 327.39010 * 6 5 4 35 35 H 1.07996 * 119.81871 * 359.95565 * 11 10 8 36 36 H 1.08001 * 119.79297 * 180.02562 * 12 11 10 37 37 H 1.08004 * 119.98160 * 179.97438 * 13 12 11 38 38 H 0.97001 * 119.99634 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.20440 * 359.97438 * 23 10 8 40 40 H 1.08997 * 115.55223 * 342.49396 * 24 7 6 41 41 H 1.08999 * 117.50125 * 0.02562 * 25 24 7 42 42 H 1.09000 * 117.49592 * 145.02141 * 25 24 7 43 43 H 1.09000 * 117.49947 * 252.51340 * 26 25 24 44 44 H 1.08995 * 117.50238 * 107.49269 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0055 5 6 3.5814 -0.7123 0.0012 6 6 4.7705 -1.6380 0.0012 7 7 5.1995 -1.8817 1.3806 8 6 6.4662 -1.6078 1.7508 9 8 6.7929 -1.7044 2.9176 10 6 7.4587 -1.1898 0.7373 11 6 7.0987 -0.2773 -0.2605 12 6 8.0217 0.1189 -1.2116 13 6 9.3054 -0.3804 -1.1881 14 6 9.6856 -1.3000 -0.1927 15 6 11.0027 -1.8149 -0.1661 16 1 11.8291 -1.2012 -0.4928 17 6 11.2349 -3.1195 0.2835 18 7 10.2261 -3.9073 0.5548 19 14 12.9852 -3.7364 0.4964 20 1 13.4062 -3.5534 1.9087 21 1 13.0485 -5.1775 0.1437 22 1 13.8924 -2.9686 -0.3939 23 6 8.7515 -1.6986 0.7785 24 6 4.2517 -2.4231 2.3577 25 6 4.6121 -2.2924 3.8389 26 6 4.6837 -3.6575 3.1519 27 8 2.2923 -1.0895 0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.9666 2.1204 -0.0005 32 1 4.5213 1.2432 -0.0109 33 1 4.4950 -2.5834 -0.4660 34 1 5.5869 -1.1808 -0.5579 35 1 6.0948 0.1196 -0.2884 36 1 7.7342 0.8240 -1.9775 37 1 10.0203 -0.0666 -1.9344 38 1 10.3871 -4.8115 0.8668 39 1 9.0352 -2.3995 1.5497 40 1 3.1991 -2.3421 2.0865 41 1 5.5542 -1.8031 4.0864 42 1 3.7965 -2.1251 4.5424 43 1 3.9151 -4.3884 3.4033 44 1 5.6729 -4.0668 2.9473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046284184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:46 Heat of formation + Delta-G solvation = 43.539216 kcal Electronic energy + Delta-G solvation = -27424.468706 eV Core-core repulsion = 23695.833805 eV Total energy + Delta-G solvation = -3728.634901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.59778 -41.61939 -39.22825 -37.48230 -36.30823 -35.25612 -34.11039 -32.78479 -31.85076 -31.33606 -29.29974 -27.38814 -25.53199 -25.06702 -23.50676 -23.15094 -22.67926 -22.45068 -21.21661 -20.47881 -19.22790 -18.25733 -17.66906 -17.37835 -17.01840 -16.86402 -16.66848 -16.14439 -15.86086 -15.32580 -15.14968 -14.79631 -14.67693 -14.30981 -14.19928 -14.05154 -13.78248 -13.74653 -13.68058 -13.54182 -13.31761 -12.94062 -12.87008 -12.70666 -12.60720 -12.31474 -12.13166 -11.95515 -11.80932 -11.45510 -11.38250 -11.12016 -10.84469 -10.33920 -9.71798 -9.41768 -9.34458 -9.22460 -8.61864 -6.43468 0.39163 0.63118 0.95944 1.37227 1.43697 1.50999 1.56249 1.70263 1.89172 2.15061 2.20150 2.72711 2.92176 3.45461 3.60642 3.62318 3.86354 3.92596 4.03334 4.05431 4.11271 4.23630 4.36067 4.48386 4.51675 4.58132 4.61688 4.71983 4.75116 4.86059 4.88593 4.90936 4.95728 5.07214 5.08579 5.14667 5.26447 5.26648 5.31431 5.47482 5.61678 5.69840 5.78317 5.88430 6.01100 6.18128 6.22156 6.28368 6.57076 6.88463 6.90428 7.12290 8.35021 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017417 B = 0.003563 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.282311 B = 7856.297767 C = 8968.960431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.014 4.014 3 C -0.224 4.224 4 C -0.195 4.195 5 C -0.042 4.042 6 C 0.152 3.848 7 N -0.573 5.573 8 C 0.568 3.432 9 O -0.563 6.563 10 C -0.132 4.132 11 C -0.212 4.212 12 C -0.090 4.090 13 C -0.208 4.208 14 C 0.075 3.925 15 C -0.497 4.497 16 H 0.083 0.917 17 C 0.028 3.972 18 N -0.839 5.839 19 Si 0.984 3.016 20 H -0.269 1.269 21 H -0.270 1.270 22 H -0.252 1.252 23 C -0.118 4.118 24 C 0.070 3.930 25 C -0.202 4.202 26 C -0.185 4.185 27 O -0.185 6.185 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.169 0.831 32 H 0.151 0.849 33 H 0.088 0.912 34 H 0.156 0.844 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.112 0.888 38 H 0.284 0.716 39 H 0.093 0.907 40 H 0.144 0.856 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.127 0.873 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.782 5.048 -2.412 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.065 4.065 3 C -0.243 4.243 4 C -0.215 4.215 5 C -0.092 4.092 6 C 0.031 3.969 7 N -0.302 5.302 8 C 0.360 3.640 9 O -0.444 6.444 10 C -0.135 4.135 11 C -0.231 4.231 12 C -0.108 4.108 13 C -0.227 4.227 14 C 0.073 3.927 15 C -0.527 4.527 16 H 0.101 0.899 17 C -0.185 4.185 18 N -0.466 5.466 19 Si 0.805 3.195 20 H -0.194 1.194 21 H -0.194 1.194 22 H -0.175 1.175 23 C -0.139 4.139 24 C -0.034 4.034 25 C -0.239 4.239 26 C -0.224 4.224 27 O -0.083 6.083 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.126 0.874 31 H 0.187 0.813 32 H 0.168 0.832 33 H 0.107 0.893 34 H 0.173 0.827 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.161 0.839 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.145 0.855 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.779 4.445 -1.755 18.410 hybrid contribution 1.165 -0.513 0.302 1.308 sum -16.614 3.932 -1.453 17.135 Atomic orbital electron populations 1.20502 0.82191 1.05249 1.04809 1.23273 0.95581 0.83655 1.03942 1.21867 0.91830 1.00709 1.09851 1.21884 0.99398 0.93868 1.06341 1.22421 0.82957 0.94829 1.09027 1.21047 0.93568 0.99201 0.83108 1.47216 1.09290 1.62842 1.10857 1.18935 0.81980 0.75185 0.87893 1.90463 1.79703 1.54515 1.19729 1.19708 0.94002 1.02312 0.97522 1.20991 1.00180 1.03715 0.98249 1.20945 0.92699 0.98842 0.98299 1.21501 0.97109 1.04331 0.99773 1.17926 0.93709 0.91168 0.89896 1.19850 0.93923 0.98792 1.40159 0.89898 1.26773 1.03269 0.96689 0.91793 1.69844 1.34521 1.07964 1.34274 0.85144 0.76919 0.77998 0.79392 1.19374 1.19437 1.17539 1.21269 0.92208 1.01489 0.98913 1.21788 0.93113 1.00840 0.87676 1.24034 1.05677 1.00331 0.93818 1.23230 1.02409 0.91975 1.04740 1.83956 1.16282 1.36130 1.71888 0.88593 0.90018 0.87419 0.81306 0.83153 0.89346 0.82734 0.84195 0.84035 0.86946 0.90563 0.88920 0.83905 0.86586 0.86988 0.85534 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.42 71.24 0.74 -0.03 16 2 C -0.01 -0.29 7.32 24.83 0.18 -0.11 16 3 C -0.22 -4.79 10.81 22.19 0.24 -4.55 16 4 C -0.19 -5.07 10.20 22.19 0.23 -4.84 16 5 C -0.04 -1.17 6.02 24.83 0.15 -1.02 16 6 C 0.15 4.67 5.76 85.63 0.49 5.17 16 7 N -0.57 -20.71 3.00 -805.48 -2.42 -23.13 16 8 C 0.57 25.45 7.07 86.80 0.61 26.06 16 9 O -0.56 -28.18 12.90 -3.87 -0.05 -28.23 16 10 C -0.13 -6.19 5.39 -20.13 -0.11 -6.30 16 11 C -0.21 -8.29 7.44 22.70 0.17 -8.12 16 12 C -0.09 -3.44 10.01 22.18 0.22 -3.22 16 13 C -0.21 -9.36 9.78 22.77 0.22 -9.13 16 14 C 0.08 3.98 5.51 -21.32 -0.12 3.86 16 15 C -0.50 -26.59 9.05 23.47 0.21 -26.38 16 16 H 0.08 4.20 7.85 -2.91 -0.02 4.18 16 17 C 0.03 1.43 5.30 85.25 0.45 1.88 16 18 N -0.84 -45.71 10.93 21.82 0.24 -45.48 16 19 Si 0.98 39.42 29.56 68.60 2.03 41.45 16 20 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 21 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 23 C -0.12 -6.42 8.23 23.01 0.19 -6.23 16 24 C 0.07 2.22 6.26 44.99 0.28 2.50 16 25 C -0.20 -6.60 9.64 30.60 0.29 -6.30 16 26 C -0.19 -5.88 9.92 30.60 0.30 -5.57 16 27 O -0.19 -4.75 10.27 -2.56 -0.03 -4.78 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 32 H 0.15 3.79 6.84 -2.91 -0.02 3.77 16 33 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.16 4.99 3.09 -3.76 -0.01 4.97 16 35 H 0.14 4.55 3.93 -2.91 -0.01 4.54 16 36 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 37 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 38 H 0.28 14.29 8.30 -92.71 -0.77 13.52 16 39 H 0.09 5.62 6.41 -2.91 -0.02 5.60 16 40 H 0.14 3.90 7.31 -2.39 -0.02 3.88 16 41 H 0.12 4.76 4.88 -32.74 -0.16 4.60 16 42 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 43 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 44 H 0.06 2.46 7.91 -2.39 -0.02 2.44 16 Total: -1.00 -66.67 361.65 5.42 -61.24 By element: Atomic # 1 Polarization: 40.38 SS G_CDS: 0.88 Total: 41.27 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 4.77 Total: -42.34 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -2.18 Total: -68.60 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.08 Total: -33.01 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -66.67 5.42 -61.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046284184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.784 kcal (2) G-P(sol) polarization free energy of solvation -66.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds