Wall clock time and date at job start Tue Mar 31 2020 13:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 S 1.76195 * 120.00186 * 179.72636 * 5 4 3 7 7 O 1.42101 * 106.40134 * 203.53747 * 6 5 4 8 8 O 1.42104 * 106.40234 * 336.45145 * 6 5 4 9 9 N 1.65591 * 107.22084 * 89.99343 * 6 5 4 10 10 C 1.46505 * 120.00225 * 269.99904 * 9 6 5 11 11 C 1.50696 * 109.46788 * 95.00107 * 10 9 6 12 12 H 1.08006 * 120.00527 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00028 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99683 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00160 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46804 * 60.00576 * 15 13 11 17 17 H 1.48500 * 109.47074 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47265 * 300.00201 * 15 13 11 19 19 C 1.46508 * 120.00112 * 90.00065 * 9 6 5 20 20 C 1.52999 * 109.46807 * 95.00000 * 19 9 6 21 21 C 1.53006 * 109.46728 * 180.02562 * 20 19 9 22 22 C 1.53000 * 109.46814 * 175.00015 * 21 20 19 23 23 C 1.52996 * 109.46847 * 294.99668 * 21 20 19 24 24 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 25 25 C 1.38234 * 120.00033 * 0.49775 * 24 5 4 26 26 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 27 27 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 28 28 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 29 29 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 30 30 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 31 31 H 1.08997 * 109.47149 * 215.00105 * 10 9 6 32 32 H 1.09000 * 109.46984 * 335.00395 * 10 9 6 33 33 H 0.97004 * 119.99740 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.47366 * 214.99740 * 19 9 6 35 35 H 1.08999 * 109.47097 * 335.00095 * 19 9 6 36 36 H 1.09001 * 109.47426 * 299.99840 * 20 19 9 37 37 H 1.09000 * 109.47729 * 60.00263 * 20 19 9 38 38 H 1.08997 * 109.47111 * 55.00240 * 21 20 19 39 39 H 1.08998 * 109.47605 * 60.00332 * 22 21 20 40 40 H 1.09003 * 109.47113 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47110 * 299.99486 * 22 21 20 42 42 H 1.08998 * 109.47573 * 299.99669 * 23 21 20 43 43 H 1.09002 * 109.47151 * 60.00390 * 23 21 20 44 44 H 1.09009 * 109.46835 * 180.02562 * 23 21 20 45 45 H 1.07999 * 119.99934 * 180.25938 * 24 5 4 46 46 H 1.08001 * 120.00294 * 179.76453 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 16 6.0337 0.0000 -0.0110 7 8 6.4329 -1.2487 -0.5594 8 8 6.4329 1.2507 -0.5547 9 7 6.5299 -0.0030 1.5688 10 6 6.7494 1.2644 2.2701 11 6 5.5064 1.6361 3.0368 12 1 4.6394 0.9928 3.0046 13 6 5.4756 2.7979 3.7786 14 7 6.5308 3.5820 3.8166 15 14 3.9346 3.2589 4.7285 16 1 3.6250 2.1943 5.7163 17 1 4.1567 4.5442 5.4384 18 1 2.7969 3.4051 3.7853 19 6 6.7493 -1.2731 2.2653 20 6 8.2294 -1.6517 2.1812 21 6 8.4584 -2.9784 2.9080 22 6 9.9111 -3.4197 2.7182 23 6 8.1708 -2.7988 4.3999 24 6 3.5805 -1.1972 0.0010 25 6 2.1982 -1.1972 0.0009 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6582 2.1324 -0.0004 30 1 4.1205 2.1325 0.0001 31 1 7.5846 1.1568 2.9621 32 1 6.9765 2.0461 1.5452 33 1 6.5089 4.3996 4.3382 34 1 6.4599 -1.1688 3.3110 35 1 6.1477 -2.0526 1.7978 36 1 8.5189 -1.7560 1.1355 37 1 8.8310 -0.8723 2.6487 38 1 7.7918 -3.7371 2.4981 39 1 10.5778 -2.6610 3.1281 40 1 10.0745 -4.3646 3.2364 41 1 10.1160 -3.5476 1.6553 42 1 8.8376 -2.0402 4.8098 43 1 7.1359 -2.4844 4.5352 44 1 8.3345 -3.7439 4.9179 45 1 4.1205 -2.1325 0.0013 46 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060552333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:07 Heat of formation + Delta-G solvation = -74.668962 kcal Electronic energy + Delta-G solvation = -26679.539342 eV Core-core repulsion = 23081.222501 eV Total energy + Delta-G solvation = -3598.316841 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.04712 -37.22811 -36.59111 -35.21194 -34.81729 -32.83204 -32.50321 -30.78738 -28.98712 -27.13475 -26.98843 -26.44515 -23.27045 -22.59030 -22.02130 -21.53690 -19.68279 -18.50954 -17.31863 -16.80007 -16.32287 -15.77689 -15.18080 -15.09668 -14.86341 -14.38254 -14.19754 -13.96260 -13.80628 -13.69127 -13.30045 -12.98822 -12.77917 -12.53297 -12.31796 -12.13332 -12.04836 -11.87329 -11.82606 -11.70143 -11.45962 -11.36282 -11.17053 -11.12209 -10.92063 -10.80005 -10.75760 -10.50110 -10.38468 -10.32540 -10.20314 -9.92257 -9.71207 -8.86141 -8.76116 -8.49450 -8.01448 -6.11460 -4.17650 0.96320 1.24368 1.58288 3.24738 3.30521 3.31910 3.53240 3.87350 4.36184 4.38790 4.77718 4.86544 4.99581 5.08907 5.13935 5.15164 5.19008 5.22822 5.39636 5.47934 5.48736 5.55609 5.73387 5.77805 5.81645 5.84253 5.93633 5.96043 6.03651 6.04616 6.07787 6.18900 6.25525 6.32379 6.38666 6.42937 6.45515 6.49702 6.63155 6.73681 6.78632 7.11261 7.34024 7.42980 7.63562 7.85759 8.14872 8.87294 9.48381 10.96413 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008638 B = 0.006025 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.717603 B = 4646.046530 C = 6391.139506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.042 4.042 3 C -0.145 4.145 4 C 0.007 3.993 5 C -0.669 4.669 6 S 2.688 3.312 7 O -0.978 6.978 8 O -0.959 6.959 9 N -0.980 5.980 10 C 0.245 3.755 11 C -0.540 4.540 12 H 0.061 0.939 13 C 0.067 3.933 14 N -0.889 5.889 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.132 3.868 20 C -0.135 4.135 21 C -0.093 4.093 22 C -0.146 4.146 23 C -0.150 4.150 24 C -0.022 4.022 25 C -0.151 4.151 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.127 0.873 30 H 0.143 0.857 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.265 0.735 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.047 0.953 45 H 0.134 0.866 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.096 -10.900 -3.955 12.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.042 4.042 3 C -0.164 4.164 4 C -0.012 4.012 5 C -0.755 4.755 6 S 2.778 3.222 7 O -0.968 6.968 8 O -0.950 6.950 9 N -0.819 5.819 10 C 0.123 3.877 11 C -0.579 4.579 12 H 0.079 0.921 13 C -0.136 4.136 14 N -0.527 5.527 15 Si 0.717 3.283 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 C 0.006 3.994 20 C -0.175 4.175 21 C -0.113 4.113 22 C -0.203 4.203 23 C -0.207 4.207 24 C -0.041 4.041 25 C -0.170 4.170 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.145 0.855 30 H 0.161 0.839 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.151 0.849 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.502 -10.691 -4.594 12.477 hybrid contribution -1.643 0.423 1.083 2.013 sum -6.146 -10.269 -3.511 12.472 Atomic orbital electron populations 1.20882 0.91140 1.03098 1.02441 1.20157 0.96029 0.93482 0.94581 1.21148 0.94416 0.97686 1.03166 1.20979 0.94390 0.97179 0.88673 1.31186 1.28245 0.99142 1.16910 1.01953 0.73824 0.73066 0.73348 1.93505 1.81413 1.44532 1.77399 1.93546 1.80938 1.43483 1.77008 1.57378 1.80406 1.13470 1.30622 1.19248 0.97355 0.78115 0.93004 1.21523 0.99802 1.06739 1.29852 0.92073 1.24911 0.96180 0.96110 0.96447 1.69922 1.28728 1.13236 1.40827 0.86690 0.83569 0.77792 0.80207 1.20237 1.21168 1.20113 1.21162 0.95310 0.83912 0.99057 1.22112 0.97752 0.96721 1.00886 1.21048 0.96859 0.97383 0.95972 1.21831 0.96394 1.00676 1.01411 1.21912 1.02329 1.01065 0.95418 1.20831 0.94543 0.96464 0.92266 1.21027 0.94193 0.97514 1.04218 0.90829 0.91314 0.91188 0.85497 0.83877 0.93983 0.92947 0.92542 0.89784 0.91845 0.91642 0.91101 0.91325 0.92723 0.93134 0.92795 0.92521 0.92066 0.93370 0.84857 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 10.01 36.01 0.36 -0.84 16 2 C -0.04 -0.59 5.88 -104.62 -0.62 -1.20 16 3 C -0.15 -2.29 9.70 -39.58 -0.38 -2.68 16 4 C 0.01 0.13 9.52 -39.58 -0.38 -0.25 16 5 C -0.67 -12.37 5.97 -39.58 -0.24 -12.60 16 6 S 2.69 54.24 5.64 -107.50 -0.61 53.64 16 7 O -0.98 -19.64 16.26 -57.17 -0.93 -20.57 16 8 O -0.96 -22.15 15.84 -57.17 -0.91 -23.05 16 9 N -0.98 -20.00 2.77 -115.66 -0.32 -20.32 16 10 C 0.24 5.94 5.43 -5.19 -0.03 5.91 16 11 C -0.54 -13.95 9.38 -34.44 -0.32 -14.28 16 12 H 0.06 1.56 7.81 -52.48 -0.41 1.14 16 13 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -25.04 13.29 55.43 0.74 -24.31 16 15 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 C 0.13 2.27 5.10 -4.04 -0.02 2.25 16 20 C -0.14 -2.12 5.01 -26.73 -0.13 -2.26 16 21 C -0.09 -1.20 2.92 -90.62 -0.26 -1.46 16 22 C -0.15 -1.67 9.19 37.16 0.34 -1.33 16 23 C -0.15 -1.86 8.95 37.16 0.33 -1.52 16 24 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 25 C -0.15 -2.10 9.70 -39.58 -0.38 -2.49 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 28 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.14 2.74 7.62 -52.49 -0.40 2.34 16 31 H 0.04 1.06 8.11 -51.93 -0.42 0.63 16 32 H 0.05 1.39 6.91 -51.93 -0.36 1.04 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.08 1.45 6.53 -51.93 -0.34 1.12 16 35 H 0.06 0.98 7.61 -51.93 -0.40 0.58 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16 44 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 45 H 0.13 1.89 7.62 -52.49 -0.40 1.49 16 46 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 389.07 15.07 5.86 5.86 Total: -1.00 -30.80 389.07 -11.08 -41.89 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.69 Total: 3.00 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: -2.21 Total: -31.77 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.42 Total: -44.63 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -1.84 Total: -43.62 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 54.24 SS G_CDS: -0.61 Total: 53.64 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.80 -11.08 -41.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060552333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.784 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds