Wall clock time and date at job start Tue Mar 31 2020 13:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 S 1.76195 * 120.00186 * 179.72636 * 5 4 3 7 7 O 1.42101 * 106.40134 * 203.53747 * 6 5 4 8 8 O 1.42104 * 106.40234 * 336.45145 * 6 5 4 9 9 N 1.65591 * 107.22084 * 89.99343 * 6 5 4 10 10 C 1.46505 * 120.00225 * 269.99904 * 9 6 5 11 11 C 1.50696 * 109.46788 * 95.00107 * 10 9 6 12 12 H 1.08006 * 120.00527 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00028 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99683 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00160 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46804 * 60.00576 * 15 13 11 17 17 H 1.48500 * 109.47074 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47265 * 300.00201 * 15 13 11 19 19 C 1.46508 * 120.00112 * 90.00065 * 9 6 5 20 20 C 1.52999 * 109.46807 * 95.00000 * 19 9 6 21 21 C 1.53006 * 109.46728 * 180.02562 * 20 19 9 22 22 C 1.53000 * 109.46814 * 175.00015 * 21 20 19 23 23 C 1.52996 * 109.46847 * 294.99668 * 21 20 19 24 24 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 25 25 C 1.38234 * 120.00033 * 0.49775 * 24 5 4 26 26 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 27 27 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 28 28 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 29 29 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 30 30 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 31 31 H 1.08997 * 109.47149 * 215.00105 * 10 9 6 32 32 H 1.09000 * 109.46984 * 335.00395 * 10 9 6 33 33 H 0.97004 * 119.99740 * 179.97438 * 14 13 11 34 34 H 1.08998 * 109.47366 * 214.99740 * 19 9 6 35 35 H 1.08999 * 109.47097 * 335.00095 * 19 9 6 36 36 H 1.09001 * 109.47426 * 299.99840 * 20 19 9 37 37 H 1.09000 * 109.47729 * 60.00263 * 20 19 9 38 38 H 1.08997 * 109.47111 * 55.00240 * 21 20 19 39 39 H 1.08998 * 109.47605 * 60.00332 * 22 21 20 40 40 H 1.09003 * 109.47113 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47110 * 299.99486 * 22 21 20 42 42 H 1.08998 * 109.47573 * 299.99669 * 23 21 20 43 43 H 1.09002 * 109.47151 * 60.00390 * 23 21 20 44 44 H 1.09009 * 109.46835 * 180.02562 * 23 21 20 45 45 H 1.07999 * 119.99934 * 180.25938 * 24 5 4 46 46 H 1.08001 * 120.00294 * 179.76453 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 16 6.0337 0.0000 -0.0110 7 8 6.4329 -1.2487 -0.5594 8 8 6.4329 1.2507 -0.5547 9 7 6.5299 -0.0030 1.5688 10 6 6.7494 1.2644 2.2701 11 6 5.5064 1.6361 3.0368 12 1 4.6394 0.9928 3.0046 13 6 5.4756 2.7979 3.7786 14 7 6.5308 3.5820 3.8166 15 14 3.9346 3.2589 4.7285 16 1 3.6250 2.1943 5.7163 17 1 4.1567 4.5442 5.4384 18 1 2.7969 3.4051 3.7853 19 6 6.7493 -1.2731 2.2653 20 6 8.2294 -1.6517 2.1812 21 6 8.4584 -2.9784 2.9080 22 6 9.9111 -3.4197 2.7182 23 6 8.1708 -2.7988 4.3999 24 6 3.5805 -1.1972 0.0010 25 6 2.1982 -1.1972 0.0009 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6582 2.1324 -0.0004 30 1 4.1205 2.1325 0.0001 31 1 7.5846 1.1568 2.9621 32 1 6.9765 2.0461 1.5452 33 1 6.5089 4.3996 4.3382 34 1 6.4599 -1.1688 3.3110 35 1 6.1477 -2.0526 1.7978 36 1 8.5189 -1.7560 1.1355 37 1 8.8310 -0.8723 2.6487 38 1 7.7918 -3.7371 2.4981 39 1 10.5778 -2.6610 3.1281 40 1 10.0745 -4.3646 3.2364 41 1 10.1160 -3.5476 1.6553 42 1 8.8376 -2.0402 4.8098 43 1 7.1359 -2.4844 4.5352 44 1 8.3345 -3.7439 4.9179 45 1 4.1205 -2.1325 0.0013 46 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060552333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:06 Heat of formation + Delta-G solvation = -91.872862 kcal Electronic energy + Delta-G solvation = -26680.285359 eV Core-core repulsion = 23081.222501 eV Total energy + Delta-G solvation = -3599.062858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.23873 -38.60742 -38.25017 -36.89861 -36.31057 -34.44678 -33.93342 -32.00532 -30.52641 -28.30389 -28.13737 -27.90420 -24.98055 -23.81983 -23.56287 -22.77380 -20.80683 -20.02053 -18.83864 -18.59824 -18.17621 -17.34523 -16.59389 -16.37508 -16.17190 -15.92883 -15.46957 -15.34513 -14.96569 -14.74689 -14.50549 -14.42498 -14.35209 -14.06969 -13.58006 -13.23614 -13.18919 -13.17070 -13.10508 -13.06757 -13.04307 -12.95785 -12.92277 -12.60993 -12.39853 -12.21625 -12.08413 -12.04194 -11.89060 -11.69175 -11.51680 -11.43699 -11.28586 -10.57793 -10.06027 -9.99498 -9.69643 -8.17106 -6.30380 -0.52552 -0.11965 0.35708 1.40335 1.41477 1.49420 2.03169 2.40846 2.54810 2.83890 3.14401 3.33955 3.80188 3.88158 3.91049 3.96998 3.98544 4.11029 4.21175 4.35518 4.39303 4.61110 4.63506 4.70612 4.71639 4.75577 4.81848 4.86640 4.89156 5.02175 5.05374 5.10775 5.12174 5.16226 5.20614 5.21870 5.26958 5.28027 5.39255 5.46814 5.49650 5.55532 5.62422 5.75539 5.93302 5.93771 6.10189 6.80796 7.39268 8.90759 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008638 B = 0.006025 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.717603 B = 4646.046530 C = 6391.139506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.034 4.034 3 C -0.155 4.155 4 C -0.023 4.023 5 C -0.685 4.685 6 S 2.693 3.307 7 O -0.980 6.980 8 O -1.000 7.000 9 N -0.985 5.985 10 C 0.262 3.738 11 C -0.540 4.540 12 H 0.065 0.935 13 C 0.015 3.985 14 N -0.926 5.926 15 Si 0.952 3.048 16 H -0.267 1.267 17 H -0.285 1.285 18 H -0.267 1.267 19 C 0.125 3.875 20 C -0.134 4.134 21 C -0.090 4.090 22 C -0.144 4.144 23 C -0.148 4.148 24 C -0.030 4.030 25 C -0.145 4.145 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.145 0.855 30 H 0.118 0.882 31 H 0.026 0.974 32 H 0.019 0.981 33 H 0.266 0.734 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.150 0.850 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.231 -13.432 -3.415 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.035 4.035 3 C -0.174 4.174 4 C -0.043 4.043 5 C -0.775 4.775 6 S 2.787 3.213 7 O -0.971 6.971 8 O -0.991 6.991 9 N -0.823 5.823 10 C 0.138 3.862 11 C -0.579 4.579 12 H 0.083 0.917 13 C -0.185 4.185 14 N -0.566 5.566 15 Si 0.776 3.224 16 H -0.192 1.192 17 H -0.210 1.210 18 H -0.192 1.192 19 C 0.000 4.000 20 C -0.173 4.173 21 C -0.109 4.109 22 C -0.202 4.202 23 C -0.206 4.206 24 C -0.049 4.049 25 C -0.163 4.163 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.163 0.837 30 H 0.136 0.864 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.168 0.832 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.595 -13.252 -4.058 15.803 hybrid contribution -0.742 1.154 0.841 1.609 sum -8.336 -12.097 -3.217 15.040 Atomic orbital electron populations 1.20992 0.87795 1.04489 1.04096 1.20683 0.98376 0.92546 0.91873 1.21430 0.93261 0.99717 1.02980 1.20945 0.95947 0.96314 0.91096 1.30718 1.26249 1.00535 1.19961 1.01460 0.74747 0.72187 0.72881 1.93483 1.82228 1.44041 1.77305 1.93487 1.82414 1.45348 1.77857 1.57258 1.81214 1.13252 1.30531 1.18756 0.96528 0.79113 0.91789 1.21748 1.00085 1.06730 1.29344 0.91665 1.25733 0.99091 0.96124 0.97511 1.70054 1.30844 1.13769 1.41941 0.85702 0.80016 0.77616 0.79025 1.19160 1.21035 1.19226 1.21425 0.96733 0.82962 0.98915 1.22097 0.96422 0.98134 1.00658 1.21051 0.98220 0.95720 0.95901 1.21822 0.95156 1.01482 1.01721 1.21897 1.01590 1.01885 0.95189 1.21159 0.95922 0.95909 0.91940 1.21522 0.93327 0.99335 1.02121 0.88815 0.89236 0.90567 0.83736 0.86429 0.95623 0.96264 0.92540 0.89924 0.89581 0.92532 0.92827 0.89983 0.93238 0.91075 0.92795 0.93618 0.92752 0.91140 0.83200 0.81613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 10.01 71.24 0.71 -1.07 16 2 C -0.03 -0.84 5.88 -19.86 -0.12 -0.95 16 3 C -0.16 -4.67 9.70 22.27 0.22 -4.46 16 4 C -0.02 -0.88 9.52 22.27 0.21 -0.67 16 5 C -0.69 -25.48 5.97 22.27 0.13 -25.34 16 6 S 2.69 113.09 5.64 -56.49 -0.32 112.77 16 7 O -0.98 -39.80 16.26 -128.00 -2.08 -41.89 16 8 O -1.00 -49.54 15.84 -128.00 -2.03 -51.57 16 9 N -0.98 -41.89 2.77 -519.83 -1.44 -43.32 16 10 C 0.26 13.45 5.43 85.63 0.47 13.92 16 11 C -0.54 -28.70 9.38 25.60 0.24 -28.46 16 12 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 13 C 0.02 0.82 5.46 84.65 0.46 1.28 16 14 N -0.93 -53.99 13.29 21.45 0.28 -53.71 16 15 Si 0.95 42.42 29.54 68.60 2.03 44.45 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 19 C 0.12 4.34 5.10 86.38 0.44 4.78 16 20 C -0.13 -4.28 5.01 30.60 0.15 -4.13 16 21 C -0.09 -2.21 2.92 -10.79 -0.03 -2.24 16 22 C -0.14 -3.11 9.19 71.98 0.66 -2.45 16 23 C -0.15 -3.50 8.95 71.98 0.64 -2.86 16 24 C -0.03 -0.90 9.52 22.27 0.21 -0.69 16 25 C -0.14 -3.47 9.70 22.27 0.22 -3.25 16 26 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.09 1.05 8.09 -2.39 -0.02 1.03 16 28 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 29 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 30 H 0.12 4.89 7.62 -2.91 -0.02 4.87 16 31 H 0.03 1.38 8.11 -2.39 -0.02 1.36 16 32 H 0.02 1.11 6.91 -2.39 -0.02 1.10 16 33 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.08 2.89 6.53 -2.39 -0.02 2.87 16 35 H 0.09 2.58 7.61 -2.39 -0.02 2.56 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.05 1.34 6.57 -2.39 -0.02 1.33 16 44 H 0.07 1.34 8.14 -2.38 -0.02 1.33 16 45 H 0.15 3.87 7.62 -2.91 -0.02 3.85 16 46 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -69.12 389.07 2.00 -67.11 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.94 Total: 22.74 kcal Atomic # 6 Polarization: -61.21 SS G_CDS: 4.62 Total: -56.58 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -1.15 Total: -97.03 kcal Atomic # 8 Polarization: -89.35 SS G_CDS: -4.11 Total: -93.46 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 113.09 SS G_CDS: -0.32 Total: 112.77 kcal Total: -69.12 2.00 -67.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060552333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.758 kcal (2) G-P(sol) polarization free energy of solvation -69.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds