Wall clock time and date at job start Tue Mar 31 2020 14:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47345 * 2 1 4 4 C 1.50695 * 109.47346 * 180.02562 * 3 2 1 5 5 C 1.38366 * 119.85652 * 89.99709 * 4 3 2 6 6 C 1.37949 * 120.14821 * 179.97438 * 5 4 3 7 7 C 1.39585 * 119.85438 * 0.02562 * 6 5 4 8 8 C 1.47817 * 120.15096 * 179.97438 * 7 6 5 9 9 O 1.21565 * 119.99437 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00088 * 180.02562 * 8 7 6 11 11 C 1.39915 * 119.99769 * 184.25429 * 10 8 7 12 12 C 1.38942 * 120.00439 * 324.62751 * 11 10 8 13 13 C 1.37993 * 119.99918 * 179.76736 * 12 11 10 14 14 C 1.38916 * 119.99975 * 0.50946 * 13 12 11 15 15 O 1.35784 * 119.99374 * 179.72064 * 14 13 12 16 16 C 1.34815 * 116.99622 * 185.36917 * 15 14 13 17 17 H 1.07992 * 120.00287 * 354.97248 * 16 15 14 18 18 C 1.38626 * 119.99536 * 174.96143 * 16 15 14 19 19 N 1.31576 * 120.00249 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 120.00347 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47039 * 89.99507 * 20 18 16 22 22 H 1.48494 * 109.46785 * 209.99548 * 20 18 16 23 23 H 1.48497 * 109.46509 * 329.99708 * 20 18 16 24 24 C 1.38906 * 120.00759 * 359.74656 * 14 13 12 25 25 C 1.37997 * 120.00712 * 359.97438 * 24 14 13 26 26 C 1.39599 * 119.70858 * 0.25937 * 7 6 5 27 27 C 1.37950 * 119.84638 * 359.48675 * 26 7 6 28 28 H 1.09003 * 109.47289 * 300.00593 * 1 2 3 29 29 H 1.09002 * 109.47253 * 60.00204 * 1 2 3 30 30 H 1.09001 * 109.47622 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47289 * 239.99407 * 2 1 3 32 32 H 1.09002 * 109.47253 * 119.99796 * 2 1 3 33 33 H 1.08994 * 109.47720 * 59.99539 * 3 2 1 34 34 H 1.09007 * 109.46853 * 299.99598 * 3 2 1 35 35 H 1.08002 * 119.92240 * 359.97438 * 5 4 3 36 36 H 1.08005 * 120.07580 * 179.97438 * 6 5 4 37 37 H 0.96995 * 120.00243 * 4.52984 * 10 8 7 38 38 H 1.08005 * 119.99567 * 0.02562 * 12 11 10 39 39 H 1.07998 * 120.00118 * 180.23811 * 13 12 11 40 40 H 0.96996 * 120.00717 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.00028 * 179.97438 * 24 14 13 42 42 H 1.07993 * 120.00637 * 179.97438 * 25 24 14 43 43 H 1.08001 * 120.07685 * 179.74472 * 26 7 6 44 44 H 1.08001 * 119.92669 * 180.25463 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5469 1.4424 -0.0006 5 6 4.2352 1.4426 -1.2009 6 6 5.6147 1.4431 -1.2085 7 6 6.3162 1.4430 -0.0018 8 6 7.7944 1.4430 -0.0023 9 8 8.4018 1.4426 -1.0553 10 7 8.4686 1.4423 1.1646 11 6 9.8649 1.5322 1.1658 12 6 10.6014 0.9192 0.1597 13 6 11.9783 1.0120 0.1583 14 6 12.6284 1.7093 1.1686 15 8 13.9835 1.7957 1.1702 16 6 14.5576 2.3898 2.2356 17 1 13.9416 2.8429 2.9982 18 6 15.9386 2.4189 2.3522 19 7 16.4990 2.9982 3.3922 20 14 17.0042 1.6355 1.0329 21 1 17.3196 2.6430 -0.0115 22 1 18.2655 1.1435 1.6430 23 1 16.2744 0.4974 0.4186 24 6 11.8925 2.3178 2.1774 25 6 10.5154 2.2301 2.1760 26 6 5.6157 1.4368 1.2057 27 6 4.2362 1.4416 1.1991 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9562 -0.8901 35 1 3.6912 1.4422 -2.1339 36 1 6.1508 1.4428 -2.1461 37 1 7.9863 1.3755 2.0035 38 1 10.0961 0.3736 -0.6235 39 1 12.5506 0.5387 -0.6258 40 1 17.4653 3.0189 3.4737 41 1 12.3982 2.8595 2.9631 42 1 9.9433 2.7027 2.9605 43 1 6.1525 1.4325 2.1429 44 1 3.6929 1.4410 2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067477278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:54 Heat of formation + Delta-G solvation = -20.120032 kcal Electronic energy + Delta-G solvation = -25211.435540 eV Core-core repulsion = 21480.040166 eV Total energy + Delta-G solvation = -3731.395374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.61787 -39.40754 -38.60896 -36.64184 -35.43755 -34.14749 -32.35486 -31.59570 -31.26757 -30.31183 -28.42979 -26.94616 -25.23751 -23.41382 -22.98889 -22.36926 -21.83230 -21.09943 -20.11809 -18.39729 -17.82436 -17.38046 -16.62671 -15.98771 -15.75577 -15.32158 -15.08822 -14.74397 -14.61402 -14.20697 -14.04111 -13.84846 -13.79800 -13.73583 -13.62149 -13.03560 -12.79890 -12.55804 -12.50342 -12.30182 -12.27280 -11.82826 -11.71202 -11.59314 -11.44556 -11.38592 -11.07330 -10.92885 -10.82497 -10.17804 -9.86975 -9.61934 -9.33240 -9.30847 -9.04571 -8.77686 -8.30108 -7.07148 -6.42017 -4.07890 0.55747 1.06219 2.03697 2.12591 2.80697 3.19119 3.23825 3.26878 3.41752 3.63723 4.24285 4.24701 4.36063 4.45709 4.58551 4.59312 4.63080 4.73833 4.87661 4.95826 4.98911 5.03667 5.10742 5.27182 5.30178 5.36657 5.45926 5.49441 5.61498 5.66113 5.70423 5.71462 5.83129 5.97154 6.02531 6.06975 6.10644 6.21604 6.22048 6.56565 6.67038 6.74290 6.92540 7.06544 7.21840 7.57464 7.60995 7.77874 8.01716 8.26938 8.93243 9.55612 10.65425 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.043993 B = 0.001864 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.308217 B =15016.871513 C =15429.999303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.060 4.060 5 C -0.126 4.126 6 C -0.056 4.056 7 C -0.133 4.133 8 C 0.550 3.450 9 O -0.524 6.524 10 N -0.655 5.655 11 C 0.042 3.958 12 C -0.069 4.069 13 C -0.178 4.178 14 C 0.153 3.847 15 O -0.216 6.216 16 C -0.389 4.389 17 H 0.107 0.893 18 C 0.064 3.936 19 N -0.879 5.879 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.206 4.206 25 C -0.090 4.090 26 C -0.084 4.084 27 C -0.125 4.125 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.402 0.598 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.279 0.721 41 H 0.138 0.862 42 H 0.114 0.886 43 H 0.127 0.873 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.851 -4.528 -4.164 30.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.122 4.122 4 C -0.061 4.061 5 C -0.144 4.144 6 C -0.075 4.075 7 C -0.136 4.136 8 C 0.338 3.662 9 O -0.401 6.401 10 N -0.300 5.300 11 C -0.051 4.051 12 C -0.089 4.089 13 C -0.198 4.198 14 C 0.101 3.899 15 O -0.121 6.121 16 C -0.465 4.465 17 H 0.124 0.876 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.226 4.226 25 C -0.110 4.110 26 C -0.103 4.103 27 C -0.143 4.143 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.237 0.763 38 H 0.149 0.851 39 H 0.139 0.861 40 H 0.090 0.910 41 H 0.156 0.844 42 H 0.132 0.868 43 H 0.145 0.855 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -29.041 -4.527 -4.959 29.807 hybrid contribution 0.334 -0.111 0.218 0.414 sum -28.707 -4.638 -4.741 29.463 Atomic orbital electron populations 1.21789 0.95539 1.01842 1.01895 1.21514 0.95791 0.95797 1.02621 1.20712 0.90524 0.97697 1.03253 1.20123 0.95923 0.96850 0.93179 1.21030 0.93773 1.01749 0.97852 1.21292 0.93806 0.94566 0.97862 1.19960 0.92716 1.06366 0.94561 1.18316 0.87006 0.76904 0.83934 1.90771 1.69414 1.48855 1.31058 1.43117 1.05753 1.72468 1.08659 1.17302 0.81019 1.05952 1.00781 1.20755 0.92473 0.97831 0.97823 1.20149 0.93436 1.05536 1.00665 1.19166 0.83835 0.93416 0.93502 1.83586 1.15234 1.70347 1.42906 1.20762 0.91574 1.34577 0.99572 0.87609 1.24462 0.95988 0.96355 0.97165 1.69650 1.11927 1.42184 1.27963 0.86179 0.79106 0.80575 0.81069 1.19863 1.20821 1.18291 1.21088 0.93080 1.06319 1.02123 1.20542 0.94278 0.98113 0.98106 1.21322 0.94548 0.97367 0.97044 1.20963 0.93740 1.01770 0.97855 0.92653 0.92650 0.92582 0.91706 0.91714 0.90722 0.90729 0.85421 0.84514 0.76259 0.85129 0.86072 0.91050 0.84433 0.86844 0.85542 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 37.15 0.37 -0.27 16 2 C -0.12 -0.60 5.92 -26.74 -0.16 -0.76 16 3 C -0.08 -0.44 5.34 -27.89 -0.15 -0.59 16 4 C -0.06 -0.45 5.14 -104.53 -0.54 -0.98 16 5 C -0.13 -1.04 9.68 -39.64 -0.38 -1.42 16 6 C -0.06 -0.59 9.60 -39.18 -0.38 -0.97 16 7 C -0.13 -1.52 5.87 -104.97 -0.62 -2.13 16 8 C 0.55 8.07 7.61 -12.35 -0.09 7.97 16 9 O -0.52 -9.53 13.80 5.31 0.07 -9.46 16 10 N -0.66 -9.07 5.28 -10.68 -0.06 -9.13 16 11 C 0.04 0.73 6.30 -83.65 -0.53 0.21 16 12 C -0.07 -1.32 8.68 -39.41 -0.34 -1.66 16 13 C -0.18 -3.72 9.98 -39.42 -0.39 -4.11 16 14 C 0.15 3.58 6.65 -39.08 -0.26 3.32 16 15 O -0.22 -5.73 8.58 -0.01 0.00 -5.73 16 16 C -0.39 -10.93 9.94 30.88 0.31 -10.63 16 17 H 0.11 3.00 5.43 -52.49 -0.28 2.72 16 18 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 19 N -0.88 -25.30 13.96 55.48 0.77 -24.52 16 20 Si 0.91 21.77 28.62 -169.99 -4.86 16.91 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 24 C -0.21 -4.40 9.16 -39.42 -0.36 -4.76 16 25 C -0.09 -1.60 9.96 -39.41 -0.39 -2.00 16 26 C -0.08 -0.73 9.54 -39.18 -0.37 -1.11 16 27 C -0.13 -0.93 9.68 -39.64 -0.38 -1.32 16 28 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 34 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.14 1.48 7.65 -52.48 -0.40 1.08 16 37 H 0.40 4.09 6.87 -40.82 -0.28 3.81 16 38 H 0.13 2.45 6.25 -52.48 -0.33 2.12 16 39 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 40 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.14 3.03 5.63 -52.49 -0.30 2.74 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.13 0.83 6.41 -52.49 -0.34 0.50 16 44 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 LS Contribution 371.67 15.07 5.60 5.60 Total: -1.00 -32.04 371.67 -8.95 -40.99 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.71 Total: 4.87 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -4.77 Total: -19.54 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.72 Total: -33.65 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.07 Total: -15.19 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.86 Total: 16.91 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.04 -8.95 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067477278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.871 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds