Wall clock time and date at job start Tue Mar 31 2020 14:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47345 * 2 1 4 4 C 1.50695 * 109.47346 * 180.02562 * 3 2 1 5 5 C 1.38366 * 119.85652 * 89.99709 * 4 3 2 6 6 C 1.37949 * 120.14821 * 179.97438 * 5 4 3 7 7 C 1.39585 * 119.85438 * 0.02562 * 6 5 4 8 8 C 1.47817 * 120.15096 * 179.97438 * 7 6 5 9 9 O 1.21565 * 119.99437 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00088 * 180.02562 * 8 7 6 11 11 C 1.39915 * 119.99769 * 184.25429 * 10 8 7 12 12 C 1.38942 * 120.00439 * 324.62751 * 11 10 8 13 13 C 1.37993 * 119.99918 * 179.76736 * 12 11 10 14 14 C 1.38916 * 119.99975 * 0.50946 * 13 12 11 15 15 O 1.35784 * 119.99374 * 179.72064 * 14 13 12 16 16 C 1.34815 * 116.99622 * 185.36917 * 15 14 13 17 17 H 1.07992 * 120.00287 * 354.97248 * 16 15 14 18 18 C 1.38626 * 119.99536 * 174.96143 * 16 15 14 19 19 N 1.31576 * 120.00249 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 120.00347 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47039 * 89.99507 * 20 18 16 22 22 H 1.48494 * 109.46785 * 209.99548 * 20 18 16 23 23 H 1.48497 * 109.46509 * 329.99708 * 20 18 16 24 24 C 1.38906 * 120.00759 * 359.74656 * 14 13 12 25 25 C 1.37997 * 120.00712 * 359.97438 * 24 14 13 26 26 C 1.39599 * 119.70858 * 0.25937 * 7 6 5 27 27 C 1.37950 * 119.84638 * 359.48675 * 26 7 6 28 28 H 1.09003 * 109.47289 * 300.00593 * 1 2 3 29 29 H 1.09002 * 109.47253 * 60.00204 * 1 2 3 30 30 H 1.09001 * 109.47622 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47289 * 239.99407 * 2 1 3 32 32 H 1.09002 * 109.47253 * 119.99796 * 2 1 3 33 33 H 1.08994 * 109.47720 * 59.99539 * 3 2 1 34 34 H 1.09007 * 109.46853 * 299.99598 * 3 2 1 35 35 H 1.08002 * 119.92240 * 359.97438 * 5 4 3 36 36 H 1.08005 * 120.07580 * 179.97438 * 6 5 4 37 37 H 0.96995 * 120.00243 * 4.52984 * 10 8 7 38 38 H 1.08005 * 119.99567 * 0.02562 * 12 11 10 39 39 H 1.07998 * 120.00118 * 180.23811 * 13 12 11 40 40 H 0.96996 * 120.00717 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.00028 * 179.97438 * 24 14 13 42 42 H 1.07993 * 120.00637 * 179.97438 * 25 24 14 43 43 H 1.08001 * 120.07685 * 179.74472 * 26 7 6 44 44 H 1.08001 * 119.92669 * 180.25463 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5469 1.4424 -0.0006 5 6 4.2352 1.4426 -1.2009 6 6 5.6147 1.4431 -1.2085 7 6 6.3162 1.4430 -0.0018 8 6 7.7944 1.4430 -0.0023 9 8 8.4018 1.4426 -1.0553 10 7 8.4686 1.4423 1.1646 11 6 9.8649 1.5322 1.1658 12 6 10.6014 0.9192 0.1597 13 6 11.9783 1.0120 0.1583 14 6 12.6284 1.7093 1.1686 15 8 13.9835 1.7957 1.1702 16 6 14.5576 2.3898 2.2356 17 1 13.9416 2.8429 2.9982 18 6 15.9386 2.4189 2.3522 19 7 16.4990 2.9982 3.3922 20 14 17.0042 1.6355 1.0329 21 1 17.3196 2.6430 -0.0115 22 1 18.2655 1.1435 1.6430 23 1 16.2744 0.4974 0.4186 24 6 11.8925 2.3178 2.1774 25 6 10.5154 2.2301 2.1760 26 6 5.6157 1.4368 1.2057 27 6 4.2362 1.4416 1.1991 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9562 -0.8901 35 1 3.6912 1.4422 -2.1339 36 1 6.1508 1.4428 -2.1461 37 1 7.9863 1.3755 2.0035 38 1 10.0961 0.3736 -0.6235 39 1 12.5506 0.5387 -0.6258 40 1 17.4653 3.0189 3.4737 41 1 12.3982 2.8595 2.9631 42 1 9.9433 2.7027 2.9605 43 1 6.1525 1.4325 2.1429 44 1 3.6929 1.4410 2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067477278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:53 Heat of formation + Delta-G solvation = -37.438461 kcal Electronic energy + Delta-G solvation = -25212.186523 eV Core-core repulsion = 21480.040166 eV Total energy + Delta-G solvation = -3732.146357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.77738 -40.74021 -39.81473 -38.21696 -35.99254 -35.50981 -34.37329 -32.29880 -31.99061 -31.88581 -29.81904 -27.79751 -27.03111 -24.35202 -23.94144 -23.68971 -22.75789 -22.04414 -21.22484 -19.88905 -19.33514 -19.09189 -17.99989 -16.74498 -16.64906 -16.36594 -16.32355 -16.13522 -15.70638 -15.64012 -15.35718 -15.14546 -14.84485 -14.52121 -14.46302 -14.37825 -14.16484 -14.09101 -13.62996 -13.45219 -13.36752 -13.05902 -12.86432 -12.74058 -12.60181 -12.03539 -12.02517 -11.99670 -11.91865 -11.46208 -11.42495 -11.24343 -10.94598 -10.68493 -9.96415 -9.90426 -9.74200 -8.71396 -8.49333 -6.20680 -0.24404 0.41064 0.46443 0.52320 1.32213 1.35605 1.52042 1.77928 2.02406 2.28574 2.72347 2.85635 3.01674 3.14896 3.56700 3.80741 3.85530 3.99947 4.01358 4.08764 4.18794 4.26955 4.42056 4.43762 4.46264 4.53707 4.55732 4.68891 4.78959 4.85076 4.96524 5.03227 5.04307 5.06562 5.13074 5.26288 5.28839 5.30080 5.35267 5.41927 5.47073 5.50036 5.51278 5.63958 5.74835 5.87826 5.93245 6.16488 6.44397 6.85051 7.10379 7.58590 8.61664 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.043993 B = 0.001864 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.308217 B =15016.871513 C =15429.999303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.082 4.082 4 C -0.053 4.053 5 C -0.129 4.129 6 C -0.071 4.071 7 C -0.156 4.156 8 C 0.551 3.449 9 O -0.565 6.565 10 N -0.645 5.645 11 C 0.068 3.932 12 C -0.076 4.076 13 C -0.177 4.177 14 C 0.116 3.884 15 O -0.244 6.244 16 C -0.399 4.399 17 H 0.088 0.912 18 C 0.013 3.987 19 N -0.920 5.920 20 Si 0.966 3.034 21 H -0.268 1.268 22 H -0.267 1.267 23 H -0.265 1.265 24 C -0.213 4.213 25 C -0.082 4.082 26 C -0.079 4.079 27 C -0.125 4.125 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.145 0.855 36 H 0.123 0.877 37 H 0.423 0.577 38 H 0.137 0.863 39 H 0.128 0.872 40 H 0.285 0.715 41 H 0.124 0.876 42 H 0.156 0.844 43 H 0.150 0.850 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.569 -5.003 -3.960 34.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.119 4.119 4 C -0.053 4.053 5 C -0.147 4.147 6 C -0.091 4.091 7 C -0.159 4.159 8 C 0.342 3.658 9 O -0.445 6.445 10 N -0.292 5.292 11 C -0.026 4.026 12 C -0.096 4.096 13 C -0.196 4.196 14 C 0.066 3.934 15 O -0.151 6.151 16 C -0.475 4.475 17 H 0.105 0.895 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.788 3.212 21 H -0.193 1.193 22 H -0.191 1.191 23 H -0.189 1.189 24 C -0.233 4.233 25 C -0.102 4.102 26 C -0.098 4.098 27 C -0.143 4.143 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.163 0.837 36 H 0.141 0.859 37 H 0.263 0.737 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.094 0.906 41 H 0.142 0.858 42 H 0.173 0.827 43 H 0.167 0.833 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -32.835 -5.011 -4.735 33.551 hybrid contribution 0.997 0.004 0.108 1.002 sum -31.838 -5.007 -4.627 32.560 Atomic orbital electron populations 1.21780 0.94891 1.02005 1.02306 1.21492 0.96330 0.95500 1.02257 1.20764 0.88811 0.98023 1.04349 1.20467 0.97214 0.94807 0.92844 1.21233 0.92843 1.01306 0.99283 1.21326 0.94910 0.95554 0.97262 1.19755 0.90475 1.09613 0.96102 1.18886 0.88443 0.75328 0.83171 1.90750 1.70555 1.50680 1.32534 1.43039 1.04083 1.72181 1.09879 1.17432 0.82914 1.03126 0.99133 1.20917 0.91870 0.98206 0.98627 1.20318 0.94259 1.04918 1.00149 1.19601 0.83176 0.95341 0.95273 1.83533 1.16827 1.72080 1.42680 1.20746 0.91958 1.34870 0.99924 0.89498 1.25208 0.97080 0.97051 0.99226 1.69721 1.12495 1.44145 1.29693 0.85283 0.77776 0.79486 0.78607 1.19294 1.19128 1.18906 1.21152 0.94664 1.06111 1.01341 1.20824 0.92955 0.97359 0.99013 1.21568 0.95280 0.96175 0.96757 1.21324 0.93330 1.00563 0.99063 0.92116 0.92383 0.92606 0.92356 0.91857 0.89384 0.89979 0.83685 0.85931 0.73716 0.84562 0.85409 0.90582 0.85817 0.82690 0.83282 0.82662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 71.98 0.71 -0.15 16 2 C -0.12 -0.84 5.92 30.59 0.18 -0.66 16 3 C -0.08 -0.57 5.34 29.85 0.16 -0.41 16 4 C -0.05 -0.61 5.14 -19.80 -0.10 -0.71 16 5 C -0.13 -1.84 9.68 22.23 0.22 -1.63 16 6 C -0.07 -1.43 9.60 22.53 0.22 -1.22 16 7 C -0.16 -3.27 5.87 -20.09 -0.12 -3.39 16 8 C 0.55 15.34 7.61 86.78 0.66 16.00 16 9 O -0.57 -20.40 13.80 -3.92 -0.05 -20.45 16 10 N -0.65 -16.15 5.28 -305.99 -1.62 -17.76 16 11 C 0.07 2.24 6.30 38.19 0.24 2.48 16 12 C -0.08 -2.87 8.68 22.38 0.19 -2.67 16 13 C -0.18 -7.46 9.98 22.37 0.22 -7.23 16 14 C 0.12 5.54 6.65 22.59 0.15 5.69 16 15 O -0.24 -13.43 8.58 -22.97 -0.20 -13.62 16 16 C -0.40 -23.40 9.94 67.91 0.68 -22.72 16 17 H 0.09 5.24 5.43 -2.91 -0.02 5.22 16 18 C 0.01 0.76 5.49 84.82 0.47 1.22 16 19 N -0.92 -54.61 13.96 21.61 0.30 -54.31 16 20 Si 0.97 45.92 28.62 68.60 1.96 47.88 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 24 C -0.21 -9.18 9.16 22.37 0.20 -8.97 16 25 C -0.08 -2.75 9.96 22.38 0.22 -2.52 16 26 C -0.08 -1.11 9.54 22.53 0.21 -0.90 16 27 C -0.13 -1.36 9.68 22.23 0.22 -1.15 16 28 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.09 0.42 8.08 -2.39 -0.02 0.40 16 34 H 0.08 0.48 8.08 -2.38 -0.02 0.46 16 35 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.12 2.72 7.65 -2.91 -0.02 2.69 16 37 H 0.42 6.98 6.87 -92.71 -0.64 6.35 16 38 H 0.14 5.04 6.25 -2.91 -0.02 5.02 16 39 H 0.13 5.09 8.06 -2.91 -0.02 5.07 16 40 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.12 5.68 5.63 -2.91 -0.02 5.66 16 42 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 43 H 0.15 1.29 6.41 -2.91 -0.02 1.27 16 44 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -72.56 371.67 5.52 -67.04 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.39 Total: 20.17 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 4.73 Total: -28.94 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -1.31 Total: -72.07 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.25 Total: -34.07 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.96 Total: 47.88 kcal Total: -72.56 5.52 -67.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067477278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.599 kcal (2) G-P(sol) polarization free energy of solvation -72.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds