Wall clock time and date at job start Tue Mar 31 2020 14:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47111 * 2 1 4 4 O 1.33905 * 125.11455 * 269.99453 * 3 2 1 5 5 C 1.34919 * 111.37100 * 179.75897 * 4 3 2 6 6 C 1.38977 * 133.04885 * 179.58054 * 5 4 3 7 7 C 1.37855 * 119.97960 * 180.38851 * 6 5 4 8 8 C 1.38672 * 120.65038 * 0.25263 * 7 6 5 9 9 C 1.37862 * 120.19078 * 359.97438 * 8 7 6 10 10 C 1.39084 * 119.63790 * 0.02562 * 9 8 7 11 11 C 1.36402 * 125.11510 * 89.99962 * 3 2 1 12 12 C 1.46496 * 127.16558 * 359.96186 * 11 3 2 13 13 C 1.35477 * 120.00166 * 130.01823 * 12 11 3 14 14 C 1.41436 * 120.00137 * 180.02562 * 13 12 11 15 15 O 1.21821 * 119.99936 * 353.68425 * 14 13 12 16 16 N 1.34776 * 119.99720 * 173.68043 * 14 13 12 17 17 C 1.36812 * 119.99726 * 183.69223 * 16 14 13 18 18 H 1.08002 * 120.00036 * 7.47477 * 17 16 14 19 19 C 1.39036 * 119.99744 * 187.47371 * 17 16 14 20 20 N 1.31374 * 120.00084 * 32.29411 * 19 17 16 21 21 Si 1.86807 * 119.99796 * 212.29284 * 19 17 16 22 22 H 1.48498 * 109.47132 * 95.00254 * 21 19 17 23 23 H 1.48501 * 109.47009 * 215.00178 * 21 19 17 24 24 H 1.48500 * 109.47157 * 334.99834 * 21 19 17 25 25 C 1.46496 * 120.00497 * 3.69152 * 16 14 13 26 26 C 1.53000 * 117.49509 * 311.14506 * 25 16 14 27 27 C 1.52999 * 117.49960 * 242.48359 * 25 16 14 28 28 H 1.09004 * 109.47086 * 60.00165 * 1 2 3 29 29 H 1.08999 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46998 * 300.00237 * 1 2 3 31 31 H 1.09000 * 109.46998 * 239.99763 * 2 1 3 32 32 H 1.09005 * 109.46802 * 120.00298 * 2 1 3 33 33 H 1.08000 * 120.00825 * 0.66650 * 6 5 4 34 34 H 1.07999 * 119.67262 * 180.23413 * 7 6 5 35 35 H 1.08000 * 119.90328 * 179.97438 * 8 7 6 36 36 H 1.08007 * 120.17781 * 180.02562 * 9 8 7 37 37 H 1.07999 * 120.00377 * 310.02239 * 12 11 3 38 38 H 1.08003 * 119.99758 * 359.97438 * 13 12 11 39 39 H 0.97006 * 119.99728 * 179.97438 * 20 19 17 40 40 H 1.09002 * 115.55203 * 96.81090 * 25 16 14 41 41 H 1.08996 * 117.50409 * 359.97438 * 26 25 16 42 42 H 1.09004 * 117.49469 * 145.02290 * 26 25 16 43 43 H 1.09005 * 117.49839 * 214.97490 * 27 25 16 44 44 H 1.08995 * 117.50277 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2892 2.1470 -1.0954 5 6 2.7210 3.3844 -0.7748 6 6 3.1137 4.4789 -1.5359 7 6 3.5238 5.6389 -0.9141 8 6 3.5547 5.7263 0.4696 9 6 3.1733 4.6493 1.2410 10 6 2.7578 3.4741 0.6240 11 6 2.2939 2.1606 1.1158 12 6 2.1445 1.7405 2.5112 13 6 3.1622 1.9237 3.3865 14 6 3.0182 1.5176 4.7336 15 8 1.9428 1.1098 5.1352 16 7 4.0708 1.5817 5.5729 17 6 3.9527 1.1187 6.8548 18 1 3.0594 0.5934 7.1591 19 6 4.9826 1.3243 7.7659 20 7 5.7234 2.4063 7.6866 21 14 5.3129 0.0620 9.1028 22 1 6.3759 -0.8712 8.6507 23 1 5.7555 0.7549 10.3394 24 1 4.0697 -0.7011 9.3810 25 6 5.3414 2.1472 5.1126 26 6 5.8973 1.6428 3.7794 27 6 6.5605 1.2228 5.0936 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.0932 4.4223 -2.6142 34 1 3.8243 6.4877 -1.5103 35 1 3.8785 6.6409 0.9441 36 1 3.1971 4.7178 2.3186 37 1 1.2231 1.2846 2.8423 38 1 4.0839 2.3791 3.0553 39 1 6.4418 2.5499 8.3225 40 1 5.5081 3.1948 5.3633 41 1 5.3180 0.8899 3.2450 42 1 6.4301 2.3585 3.1533 43 1 7.5292 1.6624 5.3315 44 1 6.4172 0.1940 5.4240 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067686667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:09 Heat of formation + Delta-G solvation = 48.128226 kcal Electronic energy + Delta-G solvation = -27167.838086 eV Core-core repulsion = 23439.402179 eV Total energy + Delta-G solvation = -3728.435907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.36828 -39.06204 -37.86372 -36.22247 -34.90287 -33.46633 -32.89251 -31.24163 -30.87195 -30.18624 -28.46607 -25.70908 -24.29857 -23.21750 -22.74924 -21.70584 -21.56733 -21.05237 -19.66717 -18.16916 -17.28246 -17.01308 -16.52503 -16.17921 -15.79956 -15.46992 -15.17873 -14.47950 -14.26309 -14.22457 -14.11363 -13.80719 -13.39316 -13.26115 -12.96499 -12.77509 -12.51292 -12.37944 -12.10712 -11.97329 -11.74313 -11.63812 -11.22694 -11.19261 -11.10216 -10.85742 -10.82770 -10.44830 -10.35537 -10.03486 -9.97616 -9.46611 -8.95338 -8.76596 -8.57125 -8.36521 -7.91364 -7.66898 -6.56448 -3.76927 0.87822 1.35512 1.69915 2.66157 2.70149 3.13660 3.21724 3.27194 3.75278 4.04947 4.32540 4.40254 4.57250 4.64605 4.75949 4.90882 5.01051 5.08313 5.09422 5.14756 5.17623 5.30380 5.45073 5.52415 5.53447 5.65257 5.74555 5.75825 5.83461 5.90132 5.92909 5.97264 6.09381 6.17360 6.24081 6.28672 6.35745 6.47368 6.54701 6.58204 6.68455 6.78894 6.94163 7.02813 7.11546 7.26565 7.45298 8.04612 8.41175 9.12638 9.35255 9.99630 10.49146 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.003585 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.856120 B = 7807.862254 C = 8915.488469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 C 0.035 3.965 4 O -0.191 6.191 5 C 0.048 3.952 6 C -0.112 4.112 7 C -0.099 4.099 8 C -0.138 4.138 9 C -0.065 4.065 10 C -0.111 4.111 11 C -0.131 4.131 12 C -0.067 4.067 13 C -0.152 4.152 14 C 0.453 3.547 15 O -0.604 6.604 16 N -0.399 5.399 17 C -0.315 4.315 18 H 0.111 0.889 19 C 0.048 3.952 20 N -0.836 5.836 21 Si 0.907 3.093 22 H -0.276 1.276 23 H -0.284 1.284 24 H -0.266 1.266 25 C 0.121 3.879 26 C -0.215 4.215 27 C -0.159 4.159 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.271 0.729 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.679 2.599 -16.649 16.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.013 4.013 4 O -0.092 6.092 5 C 0.001 3.999 6 C -0.130 4.130 7 C -0.117 4.117 8 C -0.156 4.156 9 C -0.083 4.083 10 C -0.112 4.112 11 C -0.132 4.132 12 C -0.089 4.089 13 C -0.173 4.173 14 C 0.247 3.753 15 O -0.493 6.493 16 N -0.114 5.114 17 C -0.442 4.442 18 H 0.128 0.872 19 C -0.160 4.160 20 N -0.471 5.471 21 Si 0.733 3.267 22 H -0.202 1.202 23 H -0.210 1.210 24 H -0.190 1.190 25 C 0.015 3.985 26 C -0.252 4.252 27 C -0.197 4.197 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.134 0.866 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.025 2.423 -16.554 16.761 hybrid contribution 0.591 -0.307 0.855 1.084 sum -0.433 2.115 -15.698 15.846 Atomic orbital electron populations 1.21780 0.93629 1.02523 1.02786 1.20207 0.96640 0.86866 1.04524 1.22691 1.01270 0.94478 0.82860 1.83740 1.69711 1.21633 1.34159 1.19530 1.01475 0.85353 0.93503 1.19872 1.03545 0.90249 0.99354 1.20858 0.99442 0.96586 0.94785 1.21041 1.02135 0.98815 0.93644 1.20643 0.96257 0.90823 1.00566 1.19811 1.03676 0.95009 0.92690 1.19825 1.07044 0.92499 0.93837 1.21244 0.99113 1.00138 0.88435 1.22541 0.99181 1.01073 0.94539 1.16535 0.84521 0.87690 0.86514 1.90653 1.26067 1.53907 1.78656 1.43315 1.07445 1.49933 1.10716 1.19722 1.05113 1.33159 0.86217 0.87173 1.25174 0.96635 0.95934 0.98304 1.70102 1.19346 1.21302 1.36306 0.86212 0.79272 0.81487 0.79757 1.20161 1.20959 1.19041 1.21273 0.85029 0.97234 0.94930 1.23590 1.05359 1.04531 0.91769 1.22926 0.97273 1.00817 0.98713 0.92451 0.91414 0.91673 0.89941 0.88087 0.85422 0.85045 0.85326 0.85136 0.85096 0.85877 0.91883 0.86624 0.88955 0.88988 0.89400 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.89 37.16 0.37 -1.14 16 2 C -0.05 -0.51 6.26 -27.88 -0.17 -0.68 16 3 C 0.03 0.50 6.57 -34.97 -0.23 0.27 16 4 O -0.19 -2.80 10.53 5.05 0.05 -2.74 16 5 C 0.05 0.70 7.38 -38.56 -0.28 0.42 16 6 C -0.11 -1.30 10.06 -39.45 -0.40 -1.70 16 7 C -0.10 -1.02 10.01 -39.56 -0.40 -1.42 16 8 C -0.14 -1.60 10.04 -39.56 -0.40 -2.00 16 9 C -0.06 -0.93 10.09 -39.41 -0.40 -1.32 16 10 C -0.11 -1.74 6.34 -104.96 -0.67 -2.41 16 11 C -0.13 -2.13 5.98 -103.36 -0.62 -2.75 16 12 C -0.07 -1.24 9.12 -37.24 -0.34 -1.58 16 13 C -0.15 -3.10 7.54 -39.35 -0.30 -3.40 16 14 C 0.45 11.35 7.31 -15.04 -0.11 11.24 16 15 O -0.60 -17.13 15.72 5.08 0.08 -17.05 16 16 N -0.40 -10.13 2.93 -111.00 -0.33 -10.45 16 17 C -0.32 -8.63 9.27 -15.03 -0.14 -8.77 16 18 H 0.11 3.22 7.37 -52.49 -0.39 2.84 16 19 C 0.05 1.22 4.46 -17.45 -0.08 1.14 16 20 N -0.84 -21.07 11.11 55.50 0.62 -20.46 16 21 Si 0.91 19.85 29.66 -169.99 -5.04 14.81 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 25 C 0.12 2.64 3.75 -67.93 -0.25 2.38 16 26 C -0.21 -3.85 7.79 -26.69 -0.21 -4.05 16 27 C -0.16 -3.15 9.10 -26.69 -0.24 -3.39 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 1.16 7.87 -51.93 -0.41 0.75 16 33 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 37 H 0.13 2.51 7.47 -52.49 -0.39 2.12 16 38 H 0.12 2.32 5.06 -52.48 -0.27 2.05 16 39 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 40 H 0.12 2.63 7.78 -51.93 -0.40 2.22 16 41 H 0.09 1.69 6.86 -51.93 -0.36 1.33 16 42 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 43 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 44 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 372.19 15.07 5.61 5.61 Total: -1.00 -30.90 372.19 -9.87 -40.77 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -6.00 Total: 8.67 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -4.86 Total: -19.16 kcal Atomic # 7 Polarization: -31.20 SS G_CDS: 0.29 Total: -30.91 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.13 Total: -19.80 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.04 Total: 14.81 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.90 -9.87 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.895 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds