Wall clock time and date at job start Tue Mar 31 2020 14:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47111 * 2 1 4 4 O 1.33905 * 125.11455 * 269.99453 * 3 2 1 5 5 C 1.34919 * 111.37100 * 179.75897 * 4 3 2 6 6 C 1.38977 * 133.04885 * 179.58054 * 5 4 3 7 7 C 1.37855 * 119.97960 * 180.38851 * 6 5 4 8 8 C 1.38672 * 120.65038 * 0.25263 * 7 6 5 9 9 C 1.37862 * 120.19078 * 359.97438 * 8 7 6 10 10 C 1.39084 * 119.63790 * 0.02562 * 9 8 7 11 11 C 1.36402 * 125.11510 * 89.99962 * 3 2 1 12 12 C 1.46496 * 127.16558 * 359.96186 * 11 3 2 13 13 C 1.35477 * 120.00166 * 130.01823 * 12 11 3 14 14 C 1.41436 * 120.00137 * 180.02562 * 13 12 11 15 15 O 1.21821 * 119.99936 * 353.68425 * 14 13 12 16 16 N 1.34776 * 119.99720 * 173.68043 * 14 13 12 17 17 C 1.36812 * 119.99726 * 183.69223 * 16 14 13 18 18 H 1.08002 * 120.00036 * 7.47477 * 17 16 14 19 19 C 1.39036 * 119.99744 * 187.47371 * 17 16 14 20 20 N 1.31374 * 120.00084 * 32.29411 * 19 17 16 21 21 Si 1.86807 * 119.99796 * 212.29284 * 19 17 16 22 22 H 1.48498 * 109.47132 * 95.00254 * 21 19 17 23 23 H 1.48501 * 109.47009 * 215.00178 * 21 19 17 24 24 H 1.48500 * 109.47157 * 334.99834 * 21 19 17 25 25 C 1.46496 * 120.00497 * 3.69152 * 16 14 13 26 26 C 1.53000 * 117.49509 * 311.14506 * 25 16 14 27 27 C 1.52999 * 117.49960 * 242.48359 * 25 16 14 28 28 H 1.09004 * 109.47086 * 60.00165 * 1 2 3 29 29 H 1.08999 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46998 * 300.00237 * 1 2 3 31 31 H 1.09000 * 109.46998 * 239.99763 * 2 1 3 32 32 H 1.09005 * 109.46802 * 120.00298 * 2 1 3 33 33 H 1.08000 * 120.00825 * 0.66650 * 6 5 4 34 34 H 1.07999 * 119.67262 * 180.23413 * 7 6 5 35 35 H 1.08000 * 119.90328 * 179.97438 * 8 7 6 36 36 H 1.08007 * 120.17781 * 180.02562 * 9 8 7 37 37 H 1.07999 * 120.00377 * 310.02239 * 12 11 3 38 38 H 1.08003 * 119.99758 * 359.97438 * 13 12 11 39 39 H 0.97006 * 119.99728 * 179.97438 * 20 19 17 40 40 H 1.09002 * 115.55203 * 96.81090 * 25 16 14 41 41 H 1.08996 * 117.50409 * 359.97438 * 26 25 16 42 42 H 1.09004 * 117.49469 * 145.02290 * 26 25 16 43 43 H 1.09005 * 117.49839 * 214.97490 * 27 25 16 44 44 H 1.08995 * 117.50277 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2892 2.1470 -1.0954 5 6 2.7210 3.3844 -0.7748 6 6 3.1137 4.4789 -1.5359 7 6 3.5238 5.6389 -0.9141 8 6 3.5547 5.7263 0.4696 9 6 3.1733 4.6493 1.2410 10 6 2.7578 3.4741 0.6240 11 6 2.2939 2.1606 1.1158 12 6 2.1445 1.7405 2.5112 13 6 3.1622 1.9237 3.3865 14 6 3.0182 1.5176 4.7336 15 8 1.9428 1.1098 5.1352 16 7 4.0708 1.5817 5.5729 17 6 3.9527 1.1187 6.8548 18 1 3.0594 0.5934 7.1591 19 6 4.9826 1.3243 7.7659 20 7 5.7234 2.4063 7.6866 21 14 5.3129 0.0620 9.1028 22 1 6.3759 -0.8712 8.6507 23 1 5.7555 0.7549 10.3394 24 1 4.0697 -0.7011 9.3810 25 6 5.3414 2.1472 5.1126 26 6 5.8973 1.6428 3.7794 27 6 6.5605 1.2228 5.0936 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.0932 4.4223 -2.6142 34 1 3.8243 6.4877 -1.5103 35 1 3.8785 6.6409 0.9441 36 1 3.1971 4.7178 2.3186 37 1 1.2231 1.2846 2.8423 38 1 4.0839 2.3791 3.0553 39 1 6.4418 2.5499 8.3225 40 1 5.5081 3.1948 5.3633 41 1 5.3180 0.8899 3.2450 42 1 6.4301 2.3585 3.1533 43 1 7.5292 1.6624 5.3315 44 1 6.4172 0.1940 5.4240 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067686667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:08 Heat of formation + Delta-G solvation = 32.961338 kcal Electronic energy + Delta-G solvation = -27168.495772 eV Core-core repulsion = 23439.402179 eV Total energy + Delta-G solvation = -3729.093593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.46750 -40.89693 -38.82984 -38.02154 -36.18332 -35.13493 -34.14691 -33.17359 -32.12019 -31.24921 -29.56965 -27.50924 -25.43268 -24.66270 -23.77271 -23.26412 -23.15527 -22.12588 -21.02701 -19.77899 -19.04392 -18.35573 -17.66112 -17.45010 -17.23291 -17.01918 -16.40384 -16.15655 -15.97499 -15.42260 -15.10225 -15.07375 -14.83605 -14.73843 -14.38771 -14.07065 -13.93121 -13.55298 -13.50659 -13.07210 -13.00648 -12.93682 -12.73429 -12.52468 -12.41446 -12.31421 -12.17079 -12.05869 -11.83919 -11.73149 -11.30793 -11.07313 -10.70746 -10.34970 -10.17903 -9.84359 -9.57833 -8.87987 -8.50203 -5.82874 -0.22587 0.25989 0.41979 1.31329 1.40180 1.45535 1.51322 1.64437 2.24213 2.46335 2.77194 2.90469 3.01161 3.17049 3.36728 3.57748 3.92412 4.01444 4.05849 4.08784 4.15266 4.18802 4.26947 4.28976 4.37178 4.37625 4.48607 4.55789 4.63860 4.68135 4.75075 4.91088 4.95939 4.98957 5.02392 5.20818 5.26569 5.27732 5.31547 5.34673 5.38144 5.41221 5.45651 5.50859 5.57606 5.75200 6.03911 6.18557 6.46943 7.14141 7.42517 8.05574 8.54786 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.003585 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.856120 B = 7807.862254 C = 8915.488469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 C 0.059 3.941 4 O -0.191 6.191 5 C 0.026 3.974 6 C -0.107 4.107 7 C -0.089 4.089 8 C -0.128 4.128 9 C -0.095 4.095 10 C -0.131 4.131 11 C -0.175 4.175 12 C -0.023 4.023 13 C -0.175 4.175 14 C 0.444 3.556 15 O -0.654 6.654 16 N -0.409 5.409 17 C -0.365 4.365 18 H 0.074 0.926 19 C 0.029 3.971 20 N -0.846 5.846 21 Si 0.967 3.033 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.278 1.278 25 C 0.092 3.908 26 C -0.176 4.176 27 C -0.156 4.156 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.158 0.842 34 H 0.174 0.826 35 H 0.154 0.846 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.140 0.860 39 H 0.279 0.721 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.127 0.873 43 H 0.105 0.895 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.970 3.523 -19.728 20.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 C 0.010 3.990 4 O -0.092 6.092 5 C -0.020 4.020 6 C -0.125 4.125 7 C -0.106 4.106 8 C -0.146 4.146 9 C -0.113 4.113 10 C -0.132 4.132 11 C -0.176 4.176 12 C -0.045 4.045 13 C -0.196 4.196 14 C 0.240 3.760 15 O -0.547 6.547 16 N -0.123 5.123 17 C -0.492 4.492 18 H 0.091 0.909 19 C -0.179 4.179 20 N -0.480 5.480 21 Si 0.790 3.210 22 H -0.188 1.188 23 H -0.196 1.196 24 H -0.203 1.203 25 C -0.012 4.012 26 C -0.214 4.214 27 C -0.193 4.193 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.127 0.873 32 H 0.114 0.886 33 H 0.175 0.825 34 H 0.191 0.809 35 H 0.172 0.828 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.158 0.842 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.145 0.855 43 H 0.124 0.876 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.667 3.375 -19.647 19.946 hybrid contribution -0.016 -0.476 1.625 1.693 sum 0.650 2.899 -18.023 18.266 Atomic orbital electron populations 1.21767 0.92576 1.03841 1.02201 1.20416 0.97443 0.85159 1.05592 1.23180 0.98303 0.95168 0.82308 1.83751 1.69629 1.21964 1.33874 1.19961 1.02733 0.85934 0.93356 1.20372 1.01926 0.89372 1.00834 1.21364 0.97548 0.97290 0.94441 1.21418 1.00165 0.98585 0.94416 1.20718 0.98485 0.91805 1.00302 1.19935 1.04629 0.95003 0.93640 1.19730 1.10708 0.94295 0.92899 1.21260 0.97320 0.96361 0.89568 1.22233 1.00822 1.04021 0.92500 1.17265 0.83836 0.86759 0.88174 1.90592 1.27933 1.56172 1.79966 1.43401 1.08772 1.49913 1.10198 1.19520 1.05519 1.35933 0.88217 0.90854 1.25764 0.95591 0.96898 0.99654 1.70125 1.19312 1.21579 1.36990 0.85342 0.78716 0.79243 0.77669 1.18786 1.19552 1.20287 1.21267 0.84518 0.96806 0.98647 1.23602 1.03226 1.03987 0.90565 1.22915 0.97055 0.99401 0.99960 0.91734 0.89202 0.93527 0.87253 0.88614 0.82473 0.80873 0.82840 0.86678 0.86605 0.84249 0.91042 0.87960 0.89243 0.85483 0.87634 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.89 71.98 0.71 -2.06 16 2 C -0.05 -1.04 6.26 29.85 0.19 -0.85 16 3 C 0.06 1.65 6.57 25.26 0.17 1.81 16 4 O -0.19 -5.24 10.53 -4.85 -0.05 -5.29 16 5 C 0.03 0.72 7.38 22.93 0.17 0.89 16 6 C -0.11 -2.09 10.06 22.36 0.22 -1.87 16 7 C -0.09 -1.46 10.01 22.28 0.22 -1.24 16 8 C -0.13 -2.61 10.04 22.28 0.22 -2.39 16 9 C -0.09 -2.67 10.09 22.38 0.23 -2.44 16 10 C -0.13 -4.05 6.34 -20.08 -0.13 -4.18 16 11 C -0.17 -5.75 5.98 -19.04 -0.11 -5.87 16 12 C -0.02 -0.90 9.12 23.78 0.22 -0.68 16 13 C -0.18 -7.48 7.54 22.42 0.17 -7.32 16 14 C 0.44 23.80 7.31 85.03 0.62 24.43 16 15 O -0.65 -40.10 15.72 -4.74 -0.07 -40.17 16 16 N -0.41 -21.98 2.93 -623.25 -1.83 -23.80 16 17 C -0.37 -21.27 9.27 84.11 0.78 -20.49 16 18 H 0.07 4.69 7.37 -2.91 -0.02 4.67 16 19 C 0.03 1.52 4.46 84.95 0.38 1.90 16 20 N -0.85 -43.23 11.11 21.68 0.24 -42.99 16 21 Si 0.97 41.55 29.66 68.60 2.03 43.59 16 22 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 25 C 0.09 4.13 3.75 44.99 0.17 4.30 16 26 C -0.18 -6.17 7.79 30.62 0.24 -5.93 16 27 C -0.16 -6.10 9.10 30.62 0.28 -5.82 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.10 2.15 7.87 -2.38 -0.02 2.13 16 33 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 36 H 0.12 3.48 8.06 -2.91 -0.02 3.46 16 37 H 0.12 4.76 7.47 -2.91 -0.02 4.74 16 38 H 0.14 5.38 5.06 -2.91 -0.01 5.37 16 39 H 0.28 13.14 8.31 -92.70 -0.77 12.37 16 40 H 0.10 4.79 7.78 -2.39 -0.02 4.78 16 41 H 0.09 3.23 6.86 -2.39 -0.02 3.21 16 42 H 0.13 3.56 8.14 -2.39 -0.02 3.54 16 43 H 0.11 3.72 8.14 -2.38 -0.02 3.70 16 44 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -72.59 372.19 6.07 -66.52 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 1.01 Total: 29.95 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 4.74 Total: -27.81 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -1.59 Total: -66.79 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -0.13 Total: -45.46 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.59 kcal Total: -72.59 6.07 -66.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.480 kcal (2) G-P(sol) polarization free energy of solvation -72.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds