Wall clock time and date at job start Tue Mar 31 2020 14:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47022 * 2 1 4 4 C 1.38362 * 119.85371 * 89.99893 * 3 2 1 5 5 C 1.37955 * 120.14246 * 180.02562 * 4 3 2 6 6 C 1.39570 * 119.85394 * 359.97438 * 5 4 3 7 7 C 1.47853 * 120.14548 * 179.97438 * 6 5 4 8 8 O 1.21555 * 119.99847 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00174 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00179 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47448 * 180.02562 * 10 9 7 12 12 C 1.38299 * 119.93217 * 269.73027 * 11 10 9 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38883 * 119.92808 * 0.56550 * 13 12 11 15 15 O 1.35754 * 120.06438 * 179.68623 * 14 13 12 16 16 C 1.34826 * 116.99724 * 174.49160 * 15 14 13 17 17 H 1.07998 * 120.00100 * 5.04739 * 16 15 14 18 18 C 1.38654 * 119.99970 * 185.05457 * 16 15 14 19 19 N 1.31562 * 120.00282 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00220 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47275 * 89.99838 * 20 18 16 22 22 H 1.48495 * 109.47094 * 210.00170 * 20 18 16 23 23 H 1.48506 * 109.46791 * 330.00186 * 20 18 16 24 24 C 1.38871 * 119.86468 * 359.70509 * 14 13 12 25 25 C 1.38101 * 119.93230 * 0.02562 * 24 14 13 26 26 C 1.39571 * 119.71295 * 0.25514 * 6 5 4 27 27 C 1.37960 * 119.85308 * 359.51259 * 26 6 5 28 28 H 1.09003 * 109.47252 * 59.99687 * 1 2 3 29 29 H 1.08999 * 109.47490 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47344 * 300.00111 * 1 2 3 31 31 H 1.08993 * 109.47311 * 240.00004 * 2 1 3 32 32 H 1.09004 * 109.47014 * 119.99822 * 2 1 3 33 33 H 1.08001 * 119.92625 * 0.02562 * 4 3 2 34 34 H 1.07997 * 120.07245 * 179.97438 * 5 4 3 35 35 H 0.97000 * 120.00448 * 0.02562 * 9 7 6 36 36 H 1.09002 * 109.46848 * 59.99850 * 10 9 7 37 37 H 1.09001 * 109.46885 * 300.00464 * 10 9 7 38 38 H 1.08005 * 119.96050 * 359.97425 * 12 11 10 39 39 H 1.07999 * 120.03730 * 180.26989 * 13 12 11 40 40 H 0.96996 * 120.00604 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.03853 * 179.97438 * 24 14 13 42 42 H 1.07997 * 119.96732 * 179.97438 * 25 24 14 43 43 H 1.08001 * 120.07368 * 179.72210 * 26 6 5 44 44 H 1.07996 * 119.93039 * 180.23263 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2619 2.0702 1.2000 5 6 2.7212 3.3711 1.2070 6 6 2.9548 4.0318 0.0000 7 6 3.4466 5.4262 -0.0001 8 8 3.6487 5.9994 1.0526 9 7 3.6707 6.0616 -1.1672 10 6 4.1585 7.4431 -1.1673 11 6 4.3249 7.9171 -2.5881 12 6 5.5329 7.7401 -3.2376 13 6 5.6868 8.1682 -4.5415 14 6 4.6304 8.7876 -5.1966 15 8 4.7806 9.2153 -6.4762 16 6 3.6845 9.7038 -7.0909 17 1 2.7623 9.8175 -6.5405 18 6 3.7414 10.0602 -8.4296 19 7 2.6717 10.5364 -9.0296 20 14 5.3366 9.8641 -9.3815 21 1 5.3839 8.5128 -9.9955 22 1 5.4067 10.8951 -10.4479 23 1 6.4876 10.0285 -8.4576 24 6 3.4203 8.9690 -4.5398 25 6 3.2709 8.5336 -3.2377 26 6 2.7166 3.3726 -1.2070 27 6 2.2619 2.0701 -1.2000 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0811 1.5576 2.1332 34 1 2.8996 3.8770 2.1443 35 1 3.5091 5.6044 -2.0073 36 1 5.1188 7.4893 -0.6536 37 1 3.4403 8.0819 -0.6532 38 1 6.3557 7.2629 -2.7258 39 1 6.6290 8.0258 -5.0496 40 1 2.7115 10.7860 -9.9661 41 1 2.5971 9.4507 -5.0464 42 1 2.3303 8.6747 -2.7263 43 1 2.8912 3.8799 -2.1443 44 1 2.0808 1.5576 -2.1332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067930219.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:35 Heat of formation + Delta-G solvation = -25.762561 kcal Electronic energy + Delta-G solvation = -25250.395997 eV Core-core repulsion = 21518.755945 eV Total energy + Delta-G solvation = -3731.640052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.38657 -39.38225 -38.69966 -37.04266 -34.62554 -34.38789 -32.50384 -31.33767 -30.60770 -30.37343 -29.44960 -26.27018 -25.07981 -24.15491 -22.87206 -22.21644 -21.93169 -20.65144 -20.32174 -18.27621 -17.98105 -17.34426 -16.39445 -15.86627 -15.39259 -15.23705 -15.19325 -14.80763 -14.51472 -14.12924 -14.06574 -13.93679 -13.89519 -13.68369 -13.57048 -13.29390 -12.96587 -12.77081 -12.68936 -12.30088 -12.19654 -11.93169 -11.64690 -11.51445 -11.41901 -11.17378 -10.99497 -10.86453 -10.79454 -10.24532 -10.01704 -9.50757 -9.27446 -9.17053 -8.97177 -8.89571 -8.40696 -7.50880 -6.51869 -4.18938 0.60686 1.09779 1.92160 2.00123 2.73470 3.14752 3.18915 3.29040 3.33649 3.65058 4.14908 4.30931 4.38311 4.42681 4.62513 4.71533 4.72433 4.80666 4.94451 4.99921 5.06464 5.12179 5.13747 5.21421 5.32364 5.49682 5.52370 5.54026 5.59651 5.70134 5.72022 5.80701 5.83377 6.00618 6.02733 6.12170 6.22131 6.24936 6.40310 6.44514 6.60980 6.65288 6.87530 7.09891 7.16223 7.47004 7.52050 7.68618 7.92132 8.17103 8.82566 9.43049 10.55216 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016223 B = 0.002182 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.494193 B =12827.637431 C =13858.150468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.060 4.060 4 C -0.128 4.128 5 C -0.058 4.058 6 C -0.137 4.137 7 C 0.554 3.446 8 O -0.545 6.545 9 N -0.717 5.717 10 C 0.178 3.822 11 C -0.207 4.207 12 C -0.056 4.056 13 C -0.195 4.195 14 C 0.167 3.833 15 O -0.212 6.212 16 C -0.392 4.392 17 H 0.108 0.892 18 C 0.064 3.936 19 N -0.875 5.875 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.224 4.224 25 C -0.052 4.052 26 C -0.081 4.081 27 C -0.125 4.125 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.401 0.599 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.281 0.719 41 H 0.135 0.865 42 H 0.111 0.889 43 H 0.128 0.872 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 -18.471 16.286 24.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.060 4.060 4 C -0.146 4.146 5 C -0.077 4.077 6 C -0.140 4.140 7 C 0.341 3.659 8 O -0.424 6.424 9 N -0.368 5.368 10 C 0.055 3.945 11 C -0.209 4.209 12 C -0.075 4.075 13 C -0.214 4.214 14 C 0.114 3.886 15 O -0.116 6.116 16 C -0.467 4.467 17 H 0.125 0.875 18 C -0.140 4.140 19 N -0.512 5.512 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.243 4.243 25 C -0.071 4.071 26 C -0.100 4.100 27 C -0.143 4.143 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.145 0.855 34 H 0.153 0.847 35 H 0.237 0.763 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.091 0.909 41 H 0.152 0.848 42 H 0.129 0.871 43 H 0.146 0.854 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.995 -17.909 16.645 24.470 hybrid contribution 0.331 -0.089 -1.064 1.118 sum -0.664 -17.998 15.581 23.814 Atomic orbital electron populations 1.21754 0.94382 1.01910 1.02470 1.20618 0.96441 0.92395 1.03166 1.20140 0.96491 0.96223 0.93192 1.21014 1.01069 0.94753 0.97795 1.21261 0.94746 0.93895 0.97781 1.20004 1.05035 0.94525 0.94463 1.18323 0.77690 0.85887 0.83987 1.90755 1.52600 1.67774 1.31257 1.46255 1.66964 1.15303 1.08310 1.20029 0.99481 0.80932 0.94014 1.19278 0.95693 1.09997 0.95910 1.20543 0.96117 0.97476 0.93351 1.20214 0.98806 1.06830 0.95572 1.19186 0.93213 0.91226 0.85024 1.83576 1.36993 1.69357 1.21721 1.20786 0.89399 1.41919 0.94607 0.87485 1.24494 0.98503 0.95412 0.95553 1.69641 1.28245 1.40728 1.12575 0.86172 0.83002 0.78308 0.79388 1.19799 1.20668 1.18316 1.21280 0.99095 1.08124 0.95806 1.20713 0.97154 0.95402 0.93823 1.21370 0.96629 0.94794 0.97213 1.20995 1.00741 0.94714 0.97894 0.92338 0.92229 0.92442 0.90718 0.90798 0.85499 0.84689 0.76302 0.91268 0.91261 0.86733 0.86334 0.90886 0.84760 0.87059 0.85369 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.89 37.16 0.37 -0.44 16 2 C -0.09 -0.51 6.06 -27.88 -0.17 -0.68 16 3 C -0.06 -0.48 5.14 -104.53 -0.54 -1.01 16 4 C -0.13 -1.08 9.68 -39.64 -0.38 -1.46 16 5 C -0.06 -0.60 9.60 -39.19 -0.38 -0.98 16 6 C -0.14 -1.56 5.87 -104.97 -0.62 -2.18 16 7 C 0.55 7.55 7.77 -12.33 -0.10 7.46 16 8 O -0.54 -9.15 16.35 5.32 0.09 -9.06 16 9 N -0.72 -8.95 5.50 -62.43 -0.34 -9.30 16 10 C 0.18 2.41 5.80 -5.19 -0.03 2.38 16 11 C -0.21 -3.15 5.25 -104.57 -0.55 -3.70 16 12 C -0.06 -0.87 9.69 -39.61 -0.38 -1.26 16 13 C -0.19 -3.59 9.99 -39.40 -0.39 -3.99 16 14 C 0.17 3.63 6.65 -39.11 -0.26 3.37 16 15 O -0.21 -5.36 8.59 0.05 0.00 -5.36 16 16 C -0.39 -10.64 9.95 30.89 0.31 -10.33 16 17 H 0.11 2.96 5.44 -52.49 -0.29 2.68 16 18 C 0.06 1.75 5.49 -17.51 -0.10 1.66 16 19 N -0.87 -24.56 13.96 55.48 0.77 -23.78 16 20 Si 0.91 20.99 28.62 -169.99 -4.86 16.12 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.26 -6.03 7.11 56.52 0.40 -5.62 16 24 C -0.22 -4.52 9.17 -39.40 -0.36 -4.88 16 25 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 26 C -0.08 -0.78 9.54 -39.19 -0.37 -1.15 16 27 C -0.13 -1.05 9.68 -39.64 -0.38 -1.43 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.14 1.41 7.65 -52.49 -0.40 1.01 16 35 H 0.40 4.40 6.50 -40.82 -0.27 4.14 16 36 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 37 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 39 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 40 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.13 1.05 6.41 -52.49 -0.34 0.71 16 44 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 376.24 15.07 5.67 5.67 Total: -1.00 -30.38 376.24 -9.18 -39.56 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.78 Total: 6.06 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -4.72 Total: -19.89 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.43 Total: -33.08 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.09 Total: -14.43 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.86 Total: 16.12 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.38 -9.18 -39.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067930219.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.793 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds