Wall clock time and date at job start Tue Mar 31 2020 14:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47022 * 2 1 4 4 C 1.38362 * 119.85371 * 89.99893 * 3 2 1 5 5 C 1.37955 * 120.14246 * 180.02562 * 4 3 2 6 6 C 1.39570 * 119.85394 * 359.97438 * 5 4 3 7 7 C 1.47853 * 120.14548 * 179.97438 * 6 5 4 8 8 O 1.21555 * 119.99847 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00174 * 180.02562 * 7 6 5 10 10 C 1.46503 * 120.00179 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47448 * 180.02562 * 10 9 7 12 12 C 1.38299 * 119.93217 * 269.73027 * 11 10 9 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38883 * 119.92808 * 0.56550 * 13 12 11 15 15 O 1.35754 * 120.06438 * 179.68623 * 14 13 12 16 16 C 1.34826 * 116.99724 * 174.49160 * 15 14 13 17 17 H 1.07998 * 120.00100 * 5.04739 * 16 15 14 18 18 C 1.38654 * 119.99970 * 185.05457 * 16 15 14 19 19 N 1.31562 * 120.00282 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00220 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47275 * 89.99838 * 20 18 16 22 22 H 1.48495 * 109.47094 * 210.00170 * 20 18 16 23 23 H 1.48506 * 109.46791 * 330.00186 * 20 18 16 24 24 C 1.38871 * 119.86468 * 359.70509 * 14 13 12 25 25 C 1.38101 * 119.93230 * 0.02562 * 24 14 13 26 26 C 1.39571 * 119.71295 * 0.25514 * 6 5 4 27 27 C 1.37960 * 119.85308 * 359.51259 * 26 6 5 28 28 H 1.09003 * 109.47252 * 59.99687 * 1 2 3 29 29 H 1.08999 * 109.47490 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47344 * 300.00111 * 1 2 3 31 31 H 1.08993 * 109.47311 * 240.00004 * 2 1 3 32 32 H 1.09004 * 109.47014 * 119.99822 * 2 1 3 33 33 H 1.08001 * 119.92625 * 0.02562 * 4 3 2 34 34 H 1.07997 * 120.07245 * 179.97438 * 5 4 3 35 35 H 0.97000 * 120.00448 * 0.02562 * 9 7 6 36 36 H 1.09002 * 109.46848 * 59.99850 * 10 9 7 37 37 H 1.09001 * 109.46885 * 300.00464 * 10 9 7 38 38 H 1.08005 * 119.96050 * 359.97425 * 12 11 10 39 39 H 1.07999 * 120.03730 * 180.26989 * 13 12 11 40 40 H 0.96996 * 120.00604 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.03853 * 179.97438 * 24 14 13 42 42 H 1.07997 * 119.96732 * 179.97438 * 25 24 14 43 43 H 1.08001 * 120.07368 * 179.72210 * 26 6 5 44 44 H 1.07996 * 119.93039 * 180.23263 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2619 2.0702 1.2000 5 6 2.7212 3.3711 1.2070 6 6 2.9548 4.0318 0.0000 7 6 3.4466 5.4262 -0.0001 8 8 3.6487 5.9994 1.0526 9 7 3.6707 6.0616 -1.1672 10 6 4.1585 7.4431 -1.1673 11 6 4.3249 7.9171 -2.5881 12 6 5.5329 7.7401 -3.2376 13 6 5.6868 8.1682 -4.5415 14 6 4.6304 8.7876 -5.1966 15 8 4.7806 9.2153 -6.4762 16 6 3.6845 9.7038 -7.0909 17 1 2.7623 9.8175 -6.5405 18 6 3.7414 10.0602 -8.4296 19 7 2.6717 10.5364 -9.0296 20 14 5.3366 9.8641 -9.3815 21 1 5.3839 8.5128 -9.9955 22 1 5.4067 10.8951 -10.4479 23 1 6.4876 10.0285 -8.4576 24 6 3.4203 8.9690 -4.5398 25 6 3.2709 8.5336 -3.2377 26 6 2.7166 3.3726 -1.2070 27 6 2.2619 2.0701 -1.2000 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0811 1.5576 2.1332 34 1 2.8996 3.8770 2.1443 35 1 3.5091 5.6044 -2.0073 36 1 5.1188 7.4893 -0.6536 37 1 3.4403 8.0819 -0.6532 38 1 6.3557 7.2629 -2.7258 39 1 6.6290 8.0258 -5.0496 40 1 2.7115 10.7860 -9.9661 41 1 2.5971 9.4507 -5.0464 42 1 2.3303 8.6747 -2.7263 43 1 2.8912 3.8799 -2.1443 44 1 2.0808 1.5576 -2.1332 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067930219.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:34 Heat of formation + Delta-G solvation = -42.158120 kcal Electronic energy + Delta-G solvation = -25251.106962 eV Core-core repulsion = 21518.755945 eV Total energy + Delta-G solvation = -3732.351017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.35680 -40.87881 -39.63938 -38.58089 -35.80590 -35.03286 -34.44987 -32.19207 -31.88139 -31.58853 -30.36185 -27.82002 -26.42607 -25.07378 -23.74008 -23.57385 -22.69545 -22.08788 -21.19002 -19.87067 -19.29608 -18.96121 -17.36270 -16.80126 -16.63896 -16.32052 -16.12175 -15.99225 -15.82019 -15.67449 -15.57580 -15.06450 -14.71767 -14.54151 -14.45628 -14.33216 -14.25748 -14.11872 -14.05709 -13.51077 -13.29658 -13.12141 -12.69167 -12.60844 -12.48353 -12.36983 -12.18334 -11.96742 -11.94955 -11.68540 -11.31903 -11.13048 -10.90207 -10.21591 -9.96295 -9.86025 -9.67014 -9.12191 -8.51470 -6.24649 -0.16408 0.40955 0.46021 0.52535 1.32301 1.35405 1.52039 1.82183 2.19758 2.27056 2.77886 2.86335 3.03539 3.12907 3.64886 3.77797 3.85204 3.94044 3.98749 4.01579 4.11996 4.27732 4.40545 4.41438 4.52028 4.53140 4.57074 4.64934 4.70060 4.78458 4.92947 4.95895 5.01417 5.11697 5.13597 5.19950 5.29549 5.32151 5.35904 5.39971 5.42141 5.52167 5.62988 5.68380 5.77109 5.86580 5.93873 6.17011 6.49797 6.82522 7.13903 7.55032 8.59708 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016223 B = 0.002182 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.494193 B =12827.637431 C =13858.150468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.056 4.056 4 C -0.129 4.129 5 C -0.071 4.071 6 C -0.159 4.159 7 C 0.555 3.445 8 O -0.582 6.582 9 N -0.710 5.710 10 C 0.181 3.819 11 C -0.175 4.175 12 C -0.045 4.045 13 C -0.191 4.191 14 C 0.130 3.870 15 O -0.241 6.241 16 C -0.400 4.400 17 H 0.083 0.917 18 C 0.010 3.990 19 N -0.921 5.921 20 Si 0.970 3.030 21 H -0.264 1.264 22 H -0.269 1.269 23 H -0.262 1.262 24 C -0.237 4.237 25 C -0.050 4.050 26 C -0.083 4.083 27 C -0.130 4.130 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.148 0.852 34 H 0.127 0.873 35 H 0.410 0.590 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.154 0.846 39 H 0.132 0.868 40 H 0.285 0.715 41 H 0.110 0.890 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 -21.277 17.857 27.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.056 4.056 4 C -0.147 4.147 5 C -0.090 4.090 6 C -0.162 4.162 7 C 0.344 3.656 8 O -0.464 6.464 9 N -0.361 5.361 10 C 0.059 3.941 11 C -0.176 4.176 12 C -0.063 4.063 13 C -0.210 4.210 14 C 0.080 3.920 15 O -0.148 6.148 16 C -0.476 4.476 17 H 0.100 0.900 18 C -0.189 4.189 19 N -0.561 5.561 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.186 1.186 24 C -0.257 4.257 25 C -0.069 4.069 26 C -0.102 4.102 27 C -0.148 4.148 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.166 0.834 34 H 0.145 0.855 35 H 0.247 0.753 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.171 0.829 39 H 0.150 0.850 40 H 0.095 0.905 41 H 0.128 0.872 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.196 -20.744 18.243 27.625 hybrid contribution -0.089 0.583 -1.157 1.299 sum 0.107 -20.161 17.086 26.427 Atomic orbital electron populations 1.21753 0.94143 1.02608 1.01981 1.20681 0.96492 0.90964 1.04330 1.20480 0.95088 0.97252 0.92818 1.21258 1.00303 0.93999 0.99112 1.21338 0.95490 0.94859 0.97291 1.19912 1.07083 0.93609 0.95631 1.18646 0.76894 0.86622 0.83427 1.90733 1.54386 1.68791 1.32479 1.46081 1.66658 1.14773 1.08638 1.19964 1.00242 0.81558 0.92351 1.19515 0.94831 1.06980 0.96307 1.20949 0.97190 0.96040 0.92129 1.20516 0.98319 1.05655 0.96482 1.19739 0.94961 0.92859 0.84413 1.83525 1.36006 1.71827 1.23440 1.20706 0.89502 1.42364 0.95023 0.89953 1.25295 1.01746 0.95392 0.96416 1.69726 1.30185 1.43055 1.13174 0.85217 0.78731 0.78783 0.78008 1.18935 1.19406 1.18627 1.21262 0.98261 1.08889 0.97255 1.20919 0.98740 0.94767 0.92446 1.21518 0.96397 0.95358 0.96916 1.21298 1.00094 0.94345 0.99043 0.92937 0.90989 0.92850 0.89667 0.89610 0.83412 0.85506 0.75261 0.90274 0.91203 0.82856 0.84976 0.90527 0.87203 0.84908 0.84270 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 71.98 0.71 -0.50 16 2 C -0.09 -0.73 6.06 29.85 0.18 -0.54 16 3 C -0.06 -0.74 5.14 -19.81 -0.10 -0.84 16 4 C -0.13 -1.90 9.68 22.23 0.22 -1.69 16 5 C -0.07 -1.40 9.60 22.52 0.22 -1.19 16 6 C -0.16 -3.42 5.87 -20.09 -0.12 -3.54 16 7 C 0.56 14.35 7.77 86.79 0.67 15.02 16 8 O -0.58 -19.07 16.35 -3.89 -0.06 -19.14 16 9 N -0.71 -15.97 5.50 -469.70 -2.58 -18.55 16 10 C 0.18 4.36 5.80 85.63 0.50 4.86 16 11 C -0.18 -4.81 5.25 -19.83 -0.10 -4.91 16 12 C -0.04 -1.23 9.69 22.25 0.22 -1.02 16 13 C -0.19 -6.67 9.99 22.39 0.22 -6.45 16 14 C 0.13 5.72 6.65 22.58 0.15 5.87 16 15 O -0.24 -12.57 8.59 -22.74 -0.20 -12.76 16 16 C -0.40 -22.85 9.95 67.92 0.68 -22.17 16 17 H 0.08 4.93 5.44 -2.91 -0.02 4.92 16 18 C 0.01 0.58 5.49 84.83 0.47 1.05 16 19 N -0.92 -53.96 13.96 21.61 0.30 -53.66 16 20 Si 0.97 44.21 28.62 68.60 1.96 46.18 16 21 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 24 C -0.24 -9.81 9.17 22.39 0.21 -9.61 16 25 C -0.05 -1.61 9.69 22.25 0.22 -1.39 16 26 C -0.08 -1.41 9.54 22.53 0.21 -1.20 16 27 C -0.13 -1.83 9.68 22.23 0.22 -1.61 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.47 16 31 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 32 H 0.09 0.54 8.08 -2.38 -0.02 0.52 16 33 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 34 H 0.13 2.64 7.65 -2.91 -0.02 2.62 16 35 H 0.41 7.85 6.50 -92.71 -0.60 7.25 16 36 H 0.08 1.84 8.08 -2.39 -0.02 1.82 16 37 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 38 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 39 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 40 H 0.29 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.11 5.06 5.64 -2.91 -0.02 5.05 16 42 H 0.13 3.69 8.06 -2.91 -0.02 3.66 16 43 H 0.14 1.93 6.41 -2.91 -0.02 1.91 16 44 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -69.08 376.24 4.60 -64.48 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.42 Total: 23.32 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 4.75 Total: -29.86 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -2.28 Total: -72.22 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.26 Total: -31.90 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.96 Total: 46.18 kcal Total: -69.08 4.60 -64.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067930219.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.322 kcal (2) G-P(sol) polarization free energy of solvation -69.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds