Wall clock time and date at job start Tue Mar 31 2020 14:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46983 * 2 1 4 4 C 1.50695 * 109.47204 * 119.99946 * 2 1 3 5 5 C 1.38309 * 119.96454 * 299.98297 * 4 2 1 6 6 C 1.38262 * 120.15213 * 180.02562 * 5 4 2 7 7 C 1.38127 * 120.07568 * 359.73920 * 6 5 4 8 8 C 1.38892 * 119.91896 * 0.53675 * 7 6 5 9 9 N 1.39680 * 120.06927 * 179.74813 * 8 7 6 10 10 C 1.46504 * 119.99762 * 154.72192 * 9 8 7 11 11 S 1.65599 * 120.00184 * 334.71723 * 9 8 7 12 12 O 1.42105 * 104.27655 * 333.93077 * 11 9 8 13 13 O 1.42101 * 104.27764 * 206.07514 * 11 9 8 14 14 C 1.81395 * 104.44748 * 90.00382 * 11 9 8 15 15 C 1.52999 * 109.46986 * 180.02562 * 14 11 9 16 16 C 1.53002 * 109.47213 * 180.02562 * 15 14 11 17 17 C 1.50704 * 109.47210 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00074 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00176 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99569 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00062 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47435 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47387 * 119.99688 * 21 19 17 24 24 H 1.48499 * 109.46967 * 239.99702 * 21 19 17 25 25 C 1.38085 * 119.96602 * 119.99852 * 4 2 1 26 26 H 1.09004 * 109.46933 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47118 * 299.99901 * 1 2 3 28 28 H 1.09003 * 109.47003 * 60.00099 * 1 2 3 29 29 H 1.09003 * 109.47551 * 240.00139 * 2 1 3 30 30 H 1.09006 * 109.47341 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47131 * 299.99868 * 3 2 1 32 32 H 1.08998 * 109.47112 * 60.00095 * 3 2 1 33 33 H 1.08003 * 119.92311 * 359.97126 * 5 4 2 34 34 H 1.08000 * 119.96056 * 179.97438 * 6 5 4 35 35 H 1.07998 * 120.03905 * 180.27564 * 7 6 5 36 36 H 1.08994 * 109.47028 * 269.99623 * 10 9 8 37 37 H 1.08993 * 109.47216 * 29.99770 * 10 9 8 38 38 H 1.08996 * 109.46988 * 149.99569 * 10 9 8 39 39 H 1.09003 * 109.47393 * 299.99669 * 14 11 9 40 40 H 1.08994 * 109.47678 * 60.00285 * 14 11 9 41 41 H 1.09004 * 109.47080 * 299.99725 * 15 14 11 42 42 H 1.09005 * 109.47285 * 59.99790 * 15 14 11 43 43 H 1.09003 * 109.47218 * 299.99466 * 16 15 14 44 44 H 1.08995 * 109.47220 * 59.99596 * 16 15 14 45 45 H 0.97002 * 119.99124 * 180.02562 * 20 19 17 46 46 H 1.08002 * 120.03573 * 0.02790 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6980 -0.2370 2.4863 6 6 2.1572 -0.8854 3.6178 7 6 2.9474 -2.0120 3.4974 8 6 3.2897 -2.4866 2.2378 9 7 4.0929 -3.6225 2.1124 10 6 4.0164 -4.4437 0.9016 11 16 5.1317 -4.0408 3.3323 12 8 5.4127 -2.8128 3.9899 13 8 6.1594 -4.7750 2.6811 14 6 4.1545 -5.1287 4.4057 15 6 5.0143 -5.5875 5.5852 16 6 4.1903 -6.5056 6.4903 17 6 5.0373 -6.9579 7.6518 18 1 6.0609 -6.6237 7.7362 19 6 4.5054 -7.7977 8.6072 20 7 3.2585 -8.2035 8.5051 21 14 5.5550 -8.3578 10.0472 22 1 6.9115 -7.7645 9.9314 23 1 4.9278 -7.9157 11.3185 24 1 5.6606 -9.8390 10.0362 25 6 2.8261 -1.8330 1.1029 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.0776 0.6417 2.5832 34 1 1.8946 -0.5129 4.5969 35 1 3.3020 -2.5206 4.3816 36 1 3.2597 -5.2169 1.0342 37 1 3.7485 -3.8150 0.0525 38 1 4.9840 -4.9102 0.7172 39 1 3.2860 -4.5861 4.7790 40 1 3.8233 -5.9978 3.8374 41 1 5.8831 -6.1300 5.2123 42 1 5.3452 -4.7181 6.1535 43 1 3.3213 -5.9635 6.8633 44 1 3.8598 -7.3748 5.9218 45 1 2.8842 -8.7940 9.1775 46 1 3.0874 -2.2018 0.1220 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068900994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:10 Heat of formation + Delta-G solvation = -64.474138 kcal Electronic energy + Delta-G solvation = -25500.478635 eV Core-core repulsion = 21902.603874 eV Total energy + Delta-G solvation = -3597.874761 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.05483 -37.19827 -36.97598 -35.88551 -34.81769 -34.67884 -32.23788 -30.50140 -29.70845 -27.88314 -27.42510 -26.48105 -24.00592 -23.45681 -22.16072 -21.00286 -20.36525 -18.77428 -17.66300 -17.28625 -16.75974 -16.19099 -15.93805 -15.52616 -15.25938 -14.71459 -14.53543 -14.34440 -14.20528 -13.92083 -13.86120 -13.70650 -12.81914 -12.72917 -12.63285 -12.44066 -12.39825 -12.32117 -12.01534 -11.99061 -11.85994 -11.75312 -11.63116 -11.45168 -11.31158 -10.96748 -10.94975 -10.92968 -10.80563 -10.52787 -10.29546 -10.00351 -9.43514 -9.15807 -8.88753 -8.43667 -8.12098 -6.08249 -4.11452 0.22146 1.26163 1.31294 2.48596 3.27890 3.35523 3.40323 3.59713 3.89291 4.12977 4.33826 4.39880 4.42917 4.55695 4.87092 4.91251 4.97991 5.02500 5.07704 5.14618 5.20327 5.22424 5.28246 5.30565 5.33328 5.38257 5.52823 5.53889 5.61338 5.65288 5.74085 5.80476 5.92511 5.94920 5.95584 6.17919 6.22613 6.36356 6.39513 6.49348 6.53083 6.81112 6.95933 7.53673 7.62651 7.89621 8.29436 8.94899 9.53503 11.02998 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.002662 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.864678 B =10517.351967 C =11101.400818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.052 4.052 5 C -0.143 4.143 6 C -0.078 4.078 7 C -0.160 4.160 8 C 0.181 3.819 9 N -0.947 5.947 10 C 0.070 3.930 11 S 2.586 3.414 12 O -0.944 6.944 13 O -0.951 6.951 14 C -0.605 4.605 15 C -0.105 4.105 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.152 4.152 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.022 0.978 44 H 0.021 0.979 45 H 0.261 0.739 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.047 15.709 -19.230 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.202 4.202 4 C -0.053 4.053 5 C -0.162 4.162 6 C -0.097 4.097 7 C -0.181 4.181 8 C 0.085 3.915 9 N -0.771 5.771 10 C -0.074 4.074 11 S 2.685 3.315 12 O -0.934 6.934 13 O -0.942 6.942 14 C -0.738 4.738 15 C -0.145 4.145 16 C -0.008 4.008 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.174 4.174 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.071 0.929 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.204 15.817 -19.149 25.376 hybrid contribution -0.124 -0.823 0.954 1.266 sum -5.328 14.993 -18.195 24.171 Atomic orbital electron populations 1.21854 0.94196 1.02115 1.01921 1.20127 0.96020 0.96077 0.95256 1.21858 1.01382 0.95003 1.01912 1.19641 0.96345 0.94471 0.94804 1.20885 1.02507 1.01085 0.91750 1.20915 0.95699 0.94126 0.98922 1.21102 1.01235 1.00320 0.95460 1.17459 0.92465 0.87172 0.94380 1.55678 1.55538 1.32779 1.33059 1.21838 1.04082 0.94812 0.86657 1.06003 0.74978 0.75955 0.74557 1.93617 1.82989 1.41860 1.74974 1.93567 1.52821 1.74462 1.73311 1.30602 1.14377 1.15378 1.13416 1.21538 0.98020 1.01564 0.93384 1.19074 0.94925 0.93570 0.93201 1.21278 0.98554 1.28898 1.07697 0.92285 1.25025 0.95060 0.96087 0.98234 1.69970 1.13446 1.34569 1.35385 0.86494 0.80606 0.78448 0.82250 1.19589 1.20906 1.20924 1.20706 1.02408 0.97036 0.97249 0.92457 0.92298 0.92476 0.90561 0.92448 0.92456 0.92295 0.86062 0.85295 0.85335 0.91554 0.90029 0.88883 0.85125 0.85099 0.91470 0.91419 0.96011 0.96051 0.92917 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.01 37.16 0.33 -0.59 16 2 C -0.06 -0.42 3.09 -91.78 -0.28 -0.70 16 3 C -0.14 -0.97 9.01 37.16 0.33 -0.64 16 4 C -0.05 -0.51 4.78 -104.65 -0.50 -1.01 16 5 C -0.14 -1.43 8.71 -39.55 -0.34 -1.78 16 6 C -0.08 -0.89 10.04 -39.61 -0.40 -1.29 16 7 C -0.16 -2.15 8.42 -39.38 -0.33 -2.48 16 8 C 0.18 2.34 6.06 -83.79 -0.51 1.84 16 9 N -0.95 -12.06 3.32 -65.40 -0.22 -12.27 16 10 C 0.07 0.67 10.45 59.85 0.63 1.30 16 11 S 2.59 40.14 4.79 -107.50 -0.51 39.62 16 12 O -0.94 -16.95 15.19 -57.54 -0.87 -17.83 16 13 O -0.95 -16.76 16.57 -57.54 -0.95 -17.72 16 14 C -0.61 -9.48 6.04 37.16 0.22 -9.26 16 15 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 16 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 17 C -0.53 -14.73 9.11 -34.44 -0.31 -15.05 16 18 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 21 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 C -0.15 -1.66 8.97 -39.38 -0.35 -2.01 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.37 7.39 -51.93 -0.38 -0.01 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.52 7.87 -51.93 -0.41 0.11 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.39 7.38 -51.93 -0.38 0.00 16 33 H 0.12 0.96 7.09 -52.48 -0.37 0.59 16 34 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.13 1.78 5.14 -52.49 -0.27 1.51 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.61 5.89 -51.93 -0.31 0.30 16 38 H 0.09 0.92 6.91 -51.93 -0.36 0.56 16 39 H 0.13 1.86 7.16 -51.92 -0.37 1.48 16 40 H 0.13 1.81 8.14 -51.93 -0.42 1.39 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.13 1.11 6.05 -52.49 -0.32 0.80 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -34.18 379.70 -10.37 -44.55 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.36 Total: -1.07 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: -1.89 Total: -31.77 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.52 Total: -38.00 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -1.83 Total: -35.54 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 40.14 SS G_CDS: -0.51 Total: 39.62 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.18 -10.37 -44.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068900994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.925 kcal (2) G-P(sol) polarization free energy of solvation -34.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds