Wall clock time and date at job start Tue Mar 31 2020 14:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46983 * 2 1 4 4 C 1.50695 * 109.47204 * 119.99946 * 2 1 3 5 5 C 1.38309 * 119.96454 * 299.98297 * 4 2 1 6 6 C 1.38262 * 120.15213 * 180.02562 * 5 4 2 7 7 C 1.38127 * 120.07568 * 359.73920 * 6 5 4 8 8 C 1.38892 * 119.91896 * 0.53675 * 7 6 5 9 9 N 1.39680 * 120.06927 * 179.74813 * 8 7 6 10 10 C 1.46504 * 119.99762 * 154.72192 * 9 8 7 11 11 S 1.65599 * 120.00184 * 334.71723 * 9 8 7 12 12 O 1.42105 * 104.27655 * 333.93077 * 11 9 8 13 13 O 1.42101 * 104.27764 * 206.07514 * 11 9 8 14 14 C 1.81395 * 104.44748 * 90.00382 * 11 9 8 15 15 C 1.52999 * 109.46986 * 180.02562 * 14 11 9 16 16 C 1.53002 * 109.47213 * 180.02562 * 15 14 11 17 17 C 1.50704 * 109.47210 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00074 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00176 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99569 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00062 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47435 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47387 * 119.99688 * 21 19 17 24 24 H 1.48499 * 109.46967 * 239.99702 * 21 19 17 25 25 C 1.38085 * 119.96602 * 119.99852 * 4 2 1 26 26 H 1.09004 * 109.46933 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47118 * 299.99901 * 1 2 3 28 28 H 1.09003 * 109.47003 * 60.00099 * 1 2 3 29 29 H 1.09003 * 109.47551 * 240.00139 * 2 1 3 30 30 H 1.09006 * 109.47341 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47131 * 299.99868 * 3 2 1 32 32 H 1.08998 * 109.47112 * 60.00095 * 3 2 1 33 33 H 1.08003 * 119.92311 * 359.97126 * 5 4 2 34 34 H 1.08000 * 119.96056 * 179.97438 * 6 5 4 35 35 H 1.07998 * 120.03905 * 180.27564 * 7 6 5 36 36 H 1.08994 * 109.47028 * 269.99623 * 10 9 8 37 37 H 1.08993 * 109.47216 * 29.99770 * 10 9 8 38 38 H 1.08996 * 109.46988 * 149.99569 * 10 9 8 39 39 H 1.09003 * 109.47393 * 299.99669 * 14 11 9 40 40 H 1.08994 * 109.47678 * 60.00285 * 14 11 9 41 41 H 1.09004 * 109.47080 * 299.99725 * 15 14 11 42 42 H 1.09005 * 109.47285 * 59.99790 * 15 14 11 43 43 H 1.09003 * 109.47218 * 299.99466 * 16 15 14 44 44 H 1.08995 * 109.47220 * 59.99596 * 16 15 14 45 45 H 0.97002 * 119.99124 * 180.02562 * 20 19 17 46 46 H 1.08002 * 120.03573 * 0.02790 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6980 -0.2370 2.4863 6 6 2.1572 -0.8854 3.6178 7 6 2.9474 -2.0120 3.4974 8 6 3.2897 -2.4866 2.2378 9 7 4.0929 -3.6225 2.1124 10 6 4.0164 -4.4437 0.9016 11 16 5.1317 -4.0408 3.3323 12 8 5.4127 -2.8128 3.9899 13 8 6.1594 -4.7750 2.6811 14 6 4.1545 -5.1287 4.4057 15 6 5.0143 -5.5875 5.5852 16 6 4.1903 -6.5056 6.4903 17 6 5.0373 -6.9579 7.6518 18 1 6.0609 -6.6237 7.7362 19 6 4.5054 -7.7977 8.6072 20 7 3.2585 -8.2035 8.5051 21 14 5.5550 -8.3578 10.0472 22 1 6.9115 -7.7645 9.9314 23 1 4.9278 -7.9157 11.3185 24 1 5.6606 -9.8390 10.0362 25 6 2.8261 -1.8330 1.1029 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.0776 0.6417 2.5832 34 1 1.8946 -0.5129 4.5969 35 1 3.3020 -2.5206 4.3816 36 1 3.2597 -5.2169 1.0342 37 1 3.7485 -3.8150 0.0525 38 1 4.9840 -4.9102 0.7172 39 1 3.2860 -4.5861 4.7790 40 1 3.8233 -5.9978 3.8374 41 1 5.8831 -6.1300 5.2123 42 1 5.3452 -4.7181 6.1535 43 1 3.3213 -5.9635 6.8633 44 1 3.8598 -7.3748 5.9218 45 1 2.8842 -8.7940 9.1775 46 1 3.0874 -2.2018 0.1220 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068900994.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:09 Heat of formation + Delta-G solvation = -84.589792 kcal Electronic energy + Delta-G solvation = -25501.350915 eV Core-core repulsion = 21902.603874 eV Total energy + Delta-G solvation = -3598.747041 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.89130 -38.48803 -37.81678 -37.20833 -36.54422 -35.50024 -34.22292 -31.31291 -30.52718 -29.72872 -27.90979 -27.32550 -25.72575 -24.44088 -23.02379 -22.45226 -21.48039 -19.88717 -18.80112 -18.51963 -18.28275 -17.44711 -17.10153 -16.63656 -16.52359 -16.11960 -15.80373 -15.48163 -15.09849 -14.67141 -14.63025 -14.52510 -14.33588 -14.11279 -13.78330 -13.66712 -13.51856 -13.37415 -13.17947 -13.08076 -13.01072 -12.87870 -12.79890 -12.68695 -12.54511 -12.45619 -12.21412 -12.01302 -11.81924 -11.62681 -11.53526 -11.43659 -11.31126 -10.93534 -10.60389 -9.72303 -9.02617 -8.24956 -6.36121 -1.02286 0.39750 0.45732 1.37330 1.38596 1.39385 1.52588 2.37974 2.54835 2.84546 2.93840 3.08760 3.40675 3.66174 3.73283 3.76735 3.93195 4.11379 4.24412 4.31913 4.37318 4.38207 4.45171 4.53689 4.56038 4.59396 4.64887 4.76096 4.85066 4.88384 4.89579 4.99372 5.04084 5.06473 5.07921 5.24434 5.36321 5.39524 5.42066 5.45912 5.53310 5.57972 5.62927 5.75965 5.76363 6.11591 6.16327 6.79374 7.33400 8.86860 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.002662 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.864678 B =10517.351967 C =11101.400818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.055 4.055 3 C -0.144 4.144 4 C -0.051 4.051 5 C -0.142 4.142 6 C -0.089 4.089 7 C -0.191 4.191 8 C 0.161 3.839 9 N -0.942 5.942 10 C 0.058 3.942 11 S 2.612 3.388 12 O -0.971 6.971 13 O -0.973 6.973 14 C -0.605 4.605 15 C -0.105 4.105 16 C 0.032 3.968 17 C -0.551 4.551 18 H 0.061 0.939 19 C 0.002 3.998 20 N -0.930 5.930 21 Si 0.964 3.036 22 H -0.264 1.264 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.155 4.155 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.003 0.997 44 H 0.004 0.996 45 H 0.265 0.735 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.488 16.734 -20.675 27.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.201 4.201 4 C -0.052 4.052 5 C -0.160 4.160 6 C -0.107 4.107 7 C -0.212 4.212 8 C 0.066 3.934 9 N -0.768 5.768 10 C -0.085 4.085 11 S 2.710 3.290 12 O -0.962 6.962 13 O -0.963 6.963 14 C -0.736 4.736 15 C -0.144 4.144 16 C -0.007 4.007 17 C -0.589 4.589 18 H 0.079 0.921 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.788 3.212 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.177 4.177 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.160 0.840 40 H 0.167 0.833 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.021 0.979 44 H 0.023 0.977 45 H 0.074 0.926 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.639 16.839 -20.593 27.192 hybrid contribution -0.072 -1.072 1.319 1.701 sum -5.711 15.767 -19.273 25.548 Atomic orbital electron populations 1.21844 0.93335 1.02036 1.02697 1.20188 0.96635 0.96213 0.94266 1.21859 1.00811 0.94671 1.02760 1.20016 0.95354 0.93986 0.95825 1.21179 1.02069 1.01387 0.91405 1.21164 0.95514 0.93787 1.00275 1.21223 1.02867 1.01639 0.95494 1.17657 0.93230 0.87593 0.94931 1.55343 1.55254 1.33208 1.32969 1.22169 1.04659 0.95491 0.86189 1.05007 0.74670 0.74950 0.74386 1.93576 1.83706 1.42899 1.75992 1.93533 1.54121 1.74909 1.73782 1.30544 1.14201 1.16611 1.12291 1.21336 0.98063 1.00665 0.94324 1.18961 0.94694 0.93655 0.93368 1.21744 0.99071 1.29212 1.08897 0.92099 1.25947 0.96350 0.96140 1.01172 1.70081 1.15099 1.35224 1.36565 0.85412 0.79030 0.78141 0.78585 1.18769 1.20183 1.20157 1.20993 1.02096 0.97099 0.97464 0.92966 0.92230 0.91061 0.89630 0.93346 0.90940 0.92197 0.83846 0.84093 0.86741 0.89697 0.87507 0.89247 0.83963 0.83264 0.91239 0.91373 0.97855 0.97741 0.92589 0.83510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.01 71.98 0.65 -0.79 16 2 C -0.05 -0.65 3.09 -11.54 -0.04 -0.69 16 3 C -0.14 -1.56 9.01 71.98 0.65 -0.91 16 4 C -0.05 -0.90 4.78 -19.89 -0.10 -0.99 16 5 C -0.14 -2.59 8.71 22.29 0.19 -2.40 16 6 C -0.09 -1.99 10.04 22.25 0.22 -1.77 16 7 C -0.19 -5.16 8.42 22.40 0.19 -4.97 16 8 C 0.16 4.04 6.06 38.21 0.23 4.28 16 9 N -0.94 -23.20 3.32 -360.82 -1.20 -24.40 16 10 C 0.06 1.01 10.45 127.77 1.34 2.34 16 11 S 2.61 81.25 4.79 -56.49 -0.27 80.98 16 12 O -0.97 -35.54 15.19 -127.65 -1.94 -37.48 16 13 O -0.97 -34.17 16.57 -127.65 -2.12 -36.28 16 14 C -0.61 -19.15 6.04 71.98 0.43 -18.71 16 15 C -0.10 -4.31 5.16 30.59 0.16 -4.15 16 16 C 0.03 1.64 4.97 29.85 0.15 1.79 16 17 C -0.55 -31.44 9.11 25.60 0.23 -31.21 16 18 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 19 C 0.00 0.12 5.46 84.65 0.46 0.59 16 20 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 21 Si 0.96 44.28 29.54 68.60 2.03 46.30 16 22 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 C -0.15 -3.08 8.97 22.40 0.20 -2.88 16 26 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.06 0.60 7.39 -2.39 -0.02 0.58 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 0.89 7.87 -2.39 -0.02 0.87 16 30 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.64 7.38 -2.39 -0.02 0.62 16 33 H 0.14 1.92 7.09 -2.91 -0.02 1.90 16 34 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 35 H 0.11 3.31 5.14 -2.91 -0.01 3.30 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.11 1.30 5.89 -2.39 -0.01 1.29 16 38 H 0.09 1.64 6.91 -2.39 -0.02 1.63 16 39 H 0.14 4.14 7.16 -2.39 -0.02 4.13 16 40 H 0.15 4.10 8.14 -2.39 -0.02 4.08 16 41 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 43 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 46 H 0.15 2.17 6.05 -2.91 -0.02 2.16 16 Total: -1.00 -73.98 379.70 2.72 -71.27 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.96 Total: 15.67 kcal Atomic # 6 Polarization: -65.46 SS G_CDS: 4.98 Total: -60.48 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -0.91 Total: -79.98 kcal Atomic # 8 Polarization: -69.71 SS G_CDS: -4.05 Total: -73.76 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 81.25 SS G_CDS: -0.27 Total: 80.98 kcal Total: -73.98 2.72 -71.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068900994.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.324 kcal (2) G-P(sol) polarization free energy of solvation -73.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds