Wall clock time and date at job start Tue Mar 31 2020 14:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46814 * 2 1 4 4 C 1.38165 * 120.02724 * 264.97906 * 3 2 1 5 5 C 1.38245 * 120.05651 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.11102 * 0.02562 * 5 4 3 7 7 C 1.38130 * 120.05566 * 359.97438 * 6 5 4 8 8 C 1.38713 * 120.02995 * 85.00248 * 3 2 1 9 9 O 1.35905 * 120.05129 * 359.97438 * 8 3 2 10 10 C 1.42894 * 116.99728 * 179.97438 * 9 8 3 11 11 C 1.50703 * 109.47071 * 179.97438 * 10 9 8 12 12 O 1.21277 * 119.99744 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00102 * 179.97438 * 11 10 9 14 14 C 1.37136 * 119.99886 * 354.96519 * 13 11 10 15 15 H 1.08004 * 120.00106 * 344.73755 * 14 13 11 16 16 C 1.38892 * 120.00095 * 164.73455 * 14 13 11 17 17 N 1.31422 * 119.99725 * 343.62092 * 16 14 13 18 18 Si 1.86803 * 120.00192 * 163.62416 * 16 14 13 19 19 H 1.48504 * 109.47197 * 59.99869 * 18 16 14 20 20 H 1.48499 * 109.47173 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46744 * 300.00188 * 18 16 14 22 22 C 1.39780 * 120.00081 * 174.95687 * 13 11 10 23 23 C 1.38964 * 120.07854 * 101.21409 * 22 13 11 24 24 C 1.38075 * 119.92144 * 179.79100 * 23 22 13 25 25 C 1.38309 * 120.07976 * 0.46792 * 24 23 22 26 26 C 1.38310 * 120.15830 * 359.78581 * 25 24 23 27 27 C 1.38085 * 120.07399 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.46892 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47424 * 299.99905 * 1 2 3 30 30 H 1.08997 * 109.47310 * 60.00260 * 1 2 3 31 31 H 1.09003 * 109.47029 * 240.00144 * 2 1 3 32 32 H 1.08997 * 109.47310 * 119.99740 * 2 1 3 33 33 H 1.08001 * 119.97539 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.94863 * 179.97438 * 5 4 3 35 35 H 1.08002 * 119.97467 * 180.27393 * 6 5 4 36 36 H 1.07997 * 120.02848 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47596 * 299.99938 * 10 9 8 38 38 H 1.09004 * 109.47262 * 60.00001 * 10 9 8 39 39 H 0.96997 * 119.99895 * 185.01229 * 17 16 14 40 40 H 1.07996 * 120.03651 * 0.02562 * 23 22 13 41 41 H 1.07998 * 119.96151 * 180.25432 * 24 23 22 42 42 H 1.08007 * 119.92126 * 179.76544 * 25 24 23 43 43 H 1.07996 * 119.96616 * 180.02562 * 26 25 24 44 44 H 1.07997 * 120.03909 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3614 2.0378 -1.1916 5 6 2.8227 3.3410 -1.1923 6 6 2.9565 4.0302 -0.0008 7 6 2.6288 3.4179 1.1932 8 6 2.1650 2.1102 1.1964 9 8 1.8418 1.5055 2.3698 10 6 2.0040 2.2755 3.5625 11 6 1.5991 1.4468 4.7544 12 8 1.2104 0.3087 4.5977 13 7 1.6699 1.9700 5.9944 14 6 2.2068 3.2179 6.1825 15 1 2.7902 3.6784 5.3989 16 6 2.0001 3.8895 7.3805 17 7 1.0486 3.4974 8.1979 18 14 3.0745 5.3500 7.8300 19 1 2.9306 6.4070 6.7967 20 1 2.6541 5.8864 9.1494 21 1 4.4933 4.9174 7.9012 22 6 1.1961 1.2409 7.0888 23 6 2.0876 0.5720 7.9188 24 6 1.6163 -0.1437 9.0014 25 6 0.2579 -0.2034 9.2547 26 6 -0.6328 0.4567 8.4278 27 6 -0.1681 1.1785 7.3461 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.2582 1.5016 -2.1234 34 1 3.0799 3.8215 -2.1247 35 1 3.3129 5.0498 -0.0043 36 1 2.7330 3.9567 2.1233 37 1 3.0478 2.5728 3.6641 38 1 1.3764 3.1651 3.5089 39 1 0.8562 4.0091 8.9991 40 1 3.1482 0.6151 7.7194 41 1 2.3090 -0.6604 9.6492 42 1 -0.1082 -0.7672 10.1001 43 1 -1.6928 0.4084 8.6287 44 1 -0.8641 1.6934 6.7005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072562394.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:19 Heat of formation + Delta-G solvation = -12.147263 kcal Electronic energy + Delta-G solvation = -27169.909859 eV Core-core repulsion = 23438.860211 eV Total energy + Delta-G solvation = -3731.049648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.16700 -39.31828 -37.61436 -36.65804 -34.80039 -33.97344 -31.79580 -30.11350 -29.92276 -29.72273 -28.90186 -27.13415 -25.05518 -23.74339 -22.56074 -21.57324 -21.30001 -20.85273 -19.33805 -18.06580 -17.64374 -16.30652 -15.81202 -15.59359 -15.56771 -15.47403 -14.76947 -14.49357 -14.35940 -14.16625 -13.69640 -13.66238 -13.31614 -13.18132 -12.90585 -12.56315 -12.45501 -12.27214 -11.86117 -11.68624 -11.62803 -11.54786 -11.36560 -11.22524 -11.03174 -10.72926 -10.61972 -10.59315 -10.49906 -10.39192 -10.31189 -9.51295 -8.73330 -8.67944 -8.24193 -7.91077 -7.90540 -7.63063 -6.35666 -4.15636 1.43385 1.59303 2.41018 2.47506 3.00324 3.10291 3.12012 3.30816 3.58321 3.88176 3.96578 4.65158 4.78934 4.85983 4.95557 4.96842 5.14419 5.31148 5.33621 5.53750 5.61343 5.65249 5.72356 5.72574 5.76927 5.82861 5.85466 5.88802 5.99372 6.04649 6.14103 6.28186 6.37892 6.47132 6.51567 6.52727 6.60011 6.68189 6.75295 6.93729 7.00611 7.16438 7.28996 7.41914 7.52473 7.68426 7.71349 7.90265 8.32130 8.86369 9.20185 9.63709 10.48645 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013227 B = 0.003914 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.406491 B = 7152.353472 C = 8845.742122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 C -0.116 4.116 4 C -0.084 4.084 5 C -0.166 4.166 6 C -0.085 4.085 7 C -0.210 4.210 8 C 0.141 3.859 9 O -0.287 6.287 10 C 0.062 3.938 11 C 0.467 3.533 12 O -0.574 6.574 13 N -0.408 5.408 14 C -0.363 4.363 15 H 0.101 0.899 16 C 0.049 3.951 17 N -0.842 5.842 18 Si 0.921 3.079 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.271 1.271 22 C 0.239 3.761 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.144 4.144 26 C -0.121 4.121 27 C -0.066 4.066 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.275 0.725 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.515 -0.030 -9.600 9.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.117 4.117 4 C -0.102 4.102 5 C -0.184 4.184 6 C -0.104 4.104 7 C -0.229 4.229 8 C 0.094 3.906 9 O -0.199 6.199 10 C -0.016 4.016 11 C 0.255 3.745 12 O -0.457 6.457 13 N -0.126 5.126 14 C -0.489 4.489 15 H 0.119 0.881 16 C -0.160 4.160 17 N -0.476 5.476 18 Si 0.747 3.253 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.196 1.196 22 C 0.149 3.851 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.162 4.162 26 C -0.140 4.140 27 C -0.085 4.085 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.149 0.851 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.193 -0.760 -9.392 9.498 hybrid contribution 0.674 1.527 0.578 1.766 sum 1.867 0.767 -8.814 9.042 Atomic orbital electron populations 1.21685 0.94904 1.01478 1.01914 1.20351 0.96216 0.92051 1.02664 1.19276 1.04614 0.97376 0.90413 1.20814 0.98054 0.94812 0.96529 1.20950 1.04297 0.95269 0.97883 1.20898 0.98099 0.99405 0.91951 1.21374 1.06628 0.95068 0.99809 1.18981 0.94230 0.91185 0.86177 1.86146 1.80952 1.40729 1.12042 1.22379 1.02170 0.94346 0.82662 1.19487 0.83838 0.87833 0.83332 1.90621 1.51231 1.18674 1.85149 1.41166 1.53536 1.15420 1.02511 1.19525 1.33143 0.93130 1.03109 0.88116 1.25265 0.95978 0.98836 0.95908 1.69925 1.26188 1.38324 1.13193 0.86089 0.80372 0.80604 0.78245 1.19702 1.20640 1.19633 1.17031 0.91483 0.89414 0.87184 1.20983 0.98859 0.98380 0.95944 1.20663 0.95232 1.00602 0.97651 1.20754 0.93483 1.02077 0.99911 1.20688 0.98387 0.99072 0.95863 1.20805 0.94666 0.96514 0.96561 0.92678 0.92040 0.93295 0.91710 0.90223 0.85839 0.86362 0.86114 0.85111 0.90075 0.89548 0.91415 0.87456 0.87537 0.87695 0.87503 0.87685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.89 37.16 0.37 -1.54 16 2 C -0.08 -1.04 5.79 -27.88 -0.16 -1.21 16 3 C -0.12 -1.71 5.15 -104.47 -0.54 -2.25 16 4 C -0.08 -1.03 9.68 -39.61 -0.38 -1.42 16 5 C -0.17 -1.93 10.04 -39.56 -0.40 -2.33 16 6 C -0.09 -1.07 10.04 -39.60 -0.40 -1.47 16 7 C -0.21 -3.10 9.04 -39.43 -0.36 -3.46 16 8 C 0.14 2.35 6.66 -39.22 -0.26 2.08 16 9 O -0.29 -5.62 8.81 -39.35 -0.35 -5.97 16 10 C 0.06 1.23 3.76 36.01 0.14 1.36 16 11 C 0.47 11.21 7.66 -10.98 -0.08 11.13 16 12 O -0.57 -15.41 16.48 -14.35 -0.24 -15.65 16 13 N -0.41 -10.04 2.66 -58.98 -0.16 -10.19 16 14 C -0.36 -8.67 9.19 -14.94 -0.14 -8.81 16 15 H 0.10 2.19 6.46 -52.48 -0.34 1.85 16 16 C 0.05 1.17 5.24 -17.49 -0.09 1.08 16 17 N -0.84 -20.99 10.34 55.49 0.57 -20.42 16 18 Si 0.92 18.55 29.59 -169.99 -5.03 13.53 16 19 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 C 0.24 5.86 2.29 -83.69 -0.19 5.67 16 23 C -0.12 -2.80 9.95 -39.37 -0.39 -3.19 16 24 C -0.12 -2.46 10.04 -39.61 -0.40 -2.86 16 25 C -0.14 -2.76 10.04 -39.53 -0.40 -3.16 16 26 C -0.12 -2.47 10.04 -39.61 -0.40 -2.87 16 27 C -0.07 -1.55 8.66 -39.37 -0.34 -1.89 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.73 8.05 -51.93 -0.42 0.32 16 32 H 0.08 1.27 7.69 -51.93 -0.40 0.87 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.13 1.84 6.30 -52.49 -0.33 1.51 16 37 H 0.08 1.46 7.04 -51.93 -0.37 1.09 16 38 H 0.09 1.59 7.66 -51.93 -0.40 1.20 16 39 H 0.27 6.62 8.32 -40.82 -0.34 6.28 16 40 H 0.11 2.40 8.06 -52.49 -0.42 1.98 16 41 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 43 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 44 H 0.10 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -29.13 372.76 -10.04 -39.17 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.04 Total: 9.04 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -4.42 Total: -15.13 kcal Atomic # 7 Polarization: -31.03 SS G_CDS: 0.42 Total: -30.61 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.58 Total: -21.62 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.13 -10.04 -39.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072562394.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.023 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds