Wall clock time and date at job start Tue Mar 31 2020 14:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46814 * 2 1 4 4 C 1.38165 * 120.02724 * 264.97906 * 3 2 1 5 5 C 1.38245 * 120.05651 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.11102 * 0.02562 * 5 4 3 7 7 C 1.38130 * 120.05566 * 359.97438 * 6 5 4 8 8 C 1.38713 * 120.02995 * 85.00248 * 3 2 1 9 9 O 1.35905 * 120.05129 * 359.97438 * 8 3 2 10 10 C 1.42894 * 116.99728 * 179.97438 * 9 8 3 11 11 C 1.50703 * 109.47071 * 179.97438 * 10 9 8 12 12 O 1.21277 * 119.99744 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00102 * 179.97438 * 11 10 9 14 14 C 1.37136 * 119.99886 * 354.96519 * 13 11 10 15 15 H 1.08004 * 120.00106 * 344.73755 * 14 13 11 16 16 C 1.38892 * 120.00095 * 164.73455 * 14 13 11 17 17 N 1.31422 * 119.99725 * 343.62092 * 16 14 13 18 18 Si 1.86803 * 120.00192 * 163.62416 * 16 14 13 19 19 H 1.48504 * 109.47197 * 59.99869 * 18 16 14 20 20 H 1.48499 * 109.47173 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46744 * 300.00188 * 18 16 14 22 22 C 1.39780 * 120.00081 * 174.95687 * 13 11 10 23 23 C 1.38964 * 120.07854 * 101.21409 * 22 13 11 24 24 C 1.38075 * 119.92144 * 179.79100 * 23 22 13 25 25 C 1.38309 * 120.07976 * 0.46792 * 24 23 22 26 26 C 1.38310 * 120.15830 * 359.78581 * 25 24 23 27 27 C 1.38085 * 120.07399 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.46892 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47424 * 299.99905 * 1 2 3 30 30 H 1.08997 * 109.47310 * 60.00260 * 1 2 3 31 31 H 1.09003 * 109.47029 * 240.00144 * 2 1 3 32 32 H 1.08997 * 109.47310 * 119.99740 * 2 1 3 33 33 H 1.08001 * 119.97539 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.94863 * 179.97438 * 5 4 3 35 35 H 1.08002 * 119.97467 * 180.27393 * 6 5 4 36 36 H 1.07997 * 120.02848 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47596 * 299.99938 * 10 9 8 38 38 H 1.09004 * 109.47262 * 60.00001 * 10 9 8 39 39 H 0.96997 * 119.99895 * 185.01229 * 17 16 14 40 40 H 1.07996 * 120.03651 * 0.02562 * 23 22 13 41 41 H 1.07998 * 119.96151 * 180.25432 * 24 23 22 42 42 H 1.08007 * 119.92126 * 179.76544 * 25 24 23 43 43 H 1.07996 * 119.96616 * 180.02562 * 26 25 24 44 44 H 1.07997 * 120.03909 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3614 2.0378 -1.1916 5 6 2.8227 3.3410 -1.1923 6 6 2.9565 4.0302 -0.0008 7 6 2.6288 3.4179 1.1932 8 6 2.1650 2.1102 1.1964 9 8 1.8418 1.5055 2.3698 10 6 2.0040 2.2755 3.5625 11 6 1.5991 1.4468 4.7544 12 8 1.2104 0.3087 4.5977 13 7 1.6699 1.9700 5.9944 14 6 2.2068 3.2179 6.1825 15 1 2.7902 3.6784 5.3989 16 6 2.0001 3.8895 7.3805 17 7 1.0486 3.4974 8.1979 18 14 3.0745 5.3500 7.8300 19 1 2.9306 6.4070 6.7967 20 1 2.6541 5.8864 9.1494 21 1 4.4933 4.9174 7.9012 22 6 1.1961 1.2409 7.0888 23 6 2.0876 0.5720 7.9188 24 6 1.6163 -0.1437 9.0014 25 6 0.2579 -0.2034 9.2547 26 6 -0.6328 0.4567 8.4278 27 6 -0.1681 1.1785 7.3461 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.2582 1.5016 -2.1234 34 1 3.0799 3.8215 -2.1247 35 1 3.3129 5.0498 -0.0043 36 1 2.7330 3.9567 2.1233 37 1 3.0478 2.5728 3.6641 38 1 1.3764 3.1651 3.5089 39 1 0.8562 4.0091 8.9991 40 1 3.1482 0.6151 7.7194 41 1 2.3090 -0.6604 9.6492 42 1 -0.1082 -0.7672 10.1001 43 1 -1.6928 0.4084 8.6287 44 1 -0.8641 1.6934 6.7005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072562394.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:19 Heat of formation + Delta-G solvation = -24.501018 kcal Electronic energy + Delta-G solvation = -27170.445559 eV Core-core repulsion = 23438.860211 eV Total energy + Delta-G solvation = -3731.585347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.56472 -40.89012 -39.15222 -38.09394 -36.64157 -35.03795 -33.65354 -31.59807 -31.48928 -30.98448 -30.15548 -28.64599 -26.89749 -24.81372 -23.95462 -23.25205 -22.71940 -21.97027 -21.12358 -19.66966 -19.03668 -17.89410 -17.37948 -17.17689 -16.94957 -16.66011 -16.43255 -16.14670 -15.93697 -15.32883 -15.19532 -14.90442 -14.67832 -14.55694 -14.35537 -14.13087 -13.83198 -13.72768 -13.37277 -13.23215 -12.99164 -12.86355 -12.75814 -12.70530 -12.38788 -12.26189 -12.10883 -12.05922 -11.97148 -11.73860 -11.56032 -11.28533 -10.55310 -10.07322 -9.75990 -9.60043 -9.36467 -9.05999 -8.15911 -6.03732 0.40689 0.52411 0.73308 0.78628 1.36746 1.45321 1.53889 1.76884 1.86506 2.29708 2.84302 3.02909 3.05141 3.21422 3.79043 3.89906 3.95464 4.13383 4.16761 4.21383 4.24801 4.26646 4.33100 4.37051 4.41980 4.52207 4.57522 4.67087 4.72496 4.81291 4.87523 4.98506 5.05733 5.10638 5.21771 5.31732 5.33563 5.37296 5.48273 5.58262 5.60962 5.63427 5.75129 5.78069 5.91924 5.97314 6.19940 6.42150 6.55461 7.00653 7.36767 7.79818 8.66453 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013227 B = 0.003914 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.406491 B = 7152.353472 C = 8845.742122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 C -0.131 4.131 4 C -0.081 4.081 5 C -0.155 4.155 6 C -0.088 4.088 7 C -0.222 4.222 8 C 0.101 3.899 9 O -0.314 6.314 10 C 0.080 3.920 11 C 0.449 3.551 12 O -0.616 6.616 13 N -0.413 5.413 14 C -0.382 4.382 15 H 0.116 0.884 16 C 0.010 3.990 17 N -0.864 5.864 18 Si 0.987 3.013 19 H -0.259 1.259 20 H -0.284 1.284 21 H -0.269 1.269 22 C 0.210 3.790 23 C -0.150 4.150 24 C -0.119 4.119 25 C -0.138 4.138 26 C -0.121 4.121 27 C -0.095 4.095 28 H 0.065 0.935 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.272 0.728 40 H 0.100 0.900 41 H 0.142 0.858 42 H 0.150 0.850 43 H 0.136 0.864 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 0.936 -10.581 10.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.112 4.112 3 C -0.132 4.132 4 C -0.099 4.099 5 C -0.173 4.173 6 C -0.106 4.106 7 C -0.241 4.241 8 C 0.056 3.944 9 O -0.227 6.227 10 C 0.002 3.998 11 C 0.239 3.761 12 O -0.503 6.503 13 N -0.130 5.130 14 C -0.507 4.507 15 H 0.133 0.867 16 C -0.196 4.196 17 N -0.498 5.498 18 Si 0.810 3.190 19 H -0.184 1.184 20 H -0.209 1.209 21 H -0.194 1.194 22 C 0.120 3.880 23 C -0.169 4.169 24 C -0.137 4.137 25 C -0.156 4.156 26 C -0.139 4.139 27 C -0.114 4.114 28 H 0.084 0.916 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.065 0.935 33 H 0.174 0.826 34 H 0.173 0.827 35 H 0.166 0.834 36 H 0.147 0.853 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.160 0.840 42 H 0.167 0.833 43 H 0.154 0.846 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.051 0.221 -10.384 10.587 hybrid contribution 0.379 1.203 0.839 1.515 sum 2.431 1.424 -9.545 9.952 Atomic orbital electron populations 1.21645 0.94799 1.01942 1.01128 1.20348 0.96320 0.92013 1.02485 1.19566 1.05117 0.97749 0.90761 1.21207 0.96741 0.95322 0.96581 1.21424 1.02103 0.94843 0.98942 1.21274 0.97270 1.00656 0.91351 1.21512 1.07060 0.94498 1.01026 1.19385 0.96792 0.92586 0.85620 1.86099 1.82164 1.41625 1.12820 1.22097 1.02688 0.93324 0.81705 1.20238 0.83610 0.87895 0.84370 1.90559 1.53318 1.20526 1.85862 1.41438 1.52878 1.15744 1.02944 1.19987 1.33488 0.93241 1.03978 0.86667 1.26102 0.96723 1.01327 0.95495 1.70093 1.27251 1.39252 1.13242 0.85074 0.78397 0.77634 0.77850 1.18378 1.20920 1.19448 1.17375 0.92276 0.90491 0.87811 1.21146 0.98456 0.99943 0.97395 1.21104 0.96606 0.99333 0.96700 1.21237 0.92815 1.01146 1.00411 1.21085 1.00369 0.97823 0.94639 1.20833 0.94159 0.98381 0.98055 0.91634 0.95511 0.91216 0.88631 0.93510 0.82614 0.82735 0.83394 0.85294 0.88786 0.88987 0.91722 0.88181 0.84020 0.83257 0.84572 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.89 71.98 0.71 -3.04 16 2 C -0.07 -2.08 5.79 29.85 0.17 -1.91 16 3 C -0.13 -3.83 5.15 -19.77 -0.10 -3.93 16 4 C -0.08 -1.76 9.68 22.25 0.22 -1.55 16 5 C -0.16 -3.06 10.04 22.28 0.22 -2.84 16 6 C -0.09 -1.99 10.04 22.26 0.22 -1.77 16 7 C -0.22 -6.54 9.04 22.37 0.20 -6.34 16 8 C 0.10 3.49 6.66 22.51 0.15 3.64 16 9 O -0.31 -13.21 8.81 -73.44 -0.65 -13.86 16 10 C 0.08 3.34 3.76 71.24 0.27 3.61 16 11 C 0.45 23.09 7.66 87.66 0.67 23.76 16 12 O -0.62 -35.71 16.48 16.02 0.26 -35.45 16 13 N -0.41 -21.43 2.66 -458.89 -1.22 -22.65 16 14 C -0.38 -18.79 9.19 84.02 0.77 -18.02 16 15 H 0.12 5.13 6.46 -2.91 -0.02 5.11 16 16 C 0.01 0.48 5.24 84.91 0.44 0.92 16 17 N -0.86 -43.99 10.34 21.65 0.22 -43.76 16 18 Si 0.99 38.00 29.59 68.60 2.03 40.03 16 19 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 20 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 22 C 0.21 10.79 2.29 38.22 0.09 10.87 16 23 C -0.15 -7.07 9.95 22.41 0.22 -6.84 16 24 C -0.12 -4.64 10.04 22.25 0.22 -4.42 16 25 C -0.14 -5.02 10.04 22.30 0.22 -4.79 16 26 C -0.12 -4.88 10.04 22.25 0.22 -4.65 16 27 C -0.09 -4.64 8.66 22.41 0.19 -4.45 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 2.02 8.05 -2.39 -0.02 2.00 16 32 H 0.05 1.60 7.69 -2.39 -0.02 1.58 16 33 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 34 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 36 H 0.13 3.69 6.30 -2.91 -0.02 3.67 16 37 H 0.09 3.57 7.04 -2.39 -0.02 3.55 16 38 H 0.09 3.63 7.66 -2.38 -0.02 3.62 16 39 H 0.27 13.31 8.32 -92.71 -0.77 12.54 16 40 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 42 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 43 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 44 H 0.08 4.30 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -67.96 372.76 6.78 -61.18 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.99 Total: 36.25 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 5.13 Total: -21.75 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: -1.00 Total: -66.41 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -0.38 Total: -49.31 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -67.96 6.78 -61.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072562394.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.681 kcal (2) G-P(sol) polarization free energy of solvation -67.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds