Wall clock time and date at job start Tue Mar 31 2020 13:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38265 * 119.94909 * 2 1 4 4 C 1.38136 * 120.06088 * 179.97438 * 3 2 1 5 5 C 1.38736 * 119.94128 * 0.02562 * 4 3 2 6 6 O 1.35909 * 120.05328 * 180.02562 * 5 4 3 7 7 C 1.42894 * 116.99856 * 354.59454 * 6 5 4 8 8 H 1.09003 * 109.47201 * 328.60444 * 7 6 5 9 9 C 1.52996 * 109.47507 * 88.60918 * 7 6 5 10 10 C 1.50706 * 109.46798 * 208.60756 * 7 6 5 11 11 O 1.21280 * 119.99838 * 347.58653 * 10 7 6 12 12 N 1.34779 * 120.00072 * 167.59331 * 10 7 6 13 13 C 1.37135 * 119.99837 * 355.56928 * 12 10 7 14 14 H 1.08000 * 120.00479 * 328.46202 * 13 12 10 15 15 C 1.38892 * 120.00026 * 148.46190 * 13 12 10 16 16 N 1.31418 * 120.00285 * 158.73953 * 15 13 12 17 17 Si 1.86802 * 119.99794 * 338.74226 * 15 13 12 18 18 H 1.48501 * 109.47064 * 87.25167 * 17 15 13 19 19 H 1.48498 * 109.47161 * 207.24932 * 17 15 13 20 20 H 1.48496 * 109.47341 * 327.25229 * 17 15 13 21 21 C 1.39783 * 119.99911 * 175.57616 * 12 10 7 22 22 C 1.38958 * 120.07650 * 306.14797 * 21 12 10 23 23 C 1.38092 * 119.92370 * 179.79164 * 22 21 12 24 24 C 1.38308 * 120.07217 * 0.46563 * 23 22 21 25 25 C 1.38308 * 120.16035 * 359.78966 * 24 23 22 26 26 C 1.38087 * 120.07683 * 359.97438 * 25 24 23 27 27 C 1.38722 * 119.89094 * 0.26858 * 5 4 3 28 28 C 1.38154 * 119.94173 * 359.43062 * 27 5 4 29 29 H 1.08997 * 109.46969 * 89.99772 * 1 2 3 30 30 H 1.08996 * 109.47307 * 210.00254 * 1 2 3 31 31 H 1.09003 * 109.46783 * 330.00406 * 1 2 3 32 32 H 1.08005 * 119.96987 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.03119 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.47341 * 176.11540 * 9 7 6 35 35 H 1.09003 * 109.47385 * 56.11118 * 9 7 6 36 36 H 1.08998 * 109.46877 * 296.11208 * 9 7 6 37 37 H 0.97004 * 120.00095 * 180.02562 * 16 15 13 38 38 H 1.07998 * 120.04306 * 0.02562 * 22 21 12 39 39 H 1.07992 * 119.96611 * 180.23049 * 23 22 21 40 40 H 1.08001 * 119.92026 * 179.76050 * 24 23 22 41 41 H 1.07995 * 119.96516 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.03872 * 179.97438 * 26 25 24 43 43 H 1.08003 * 120.03232 * 179.72217 * 27 5 4 44 44 H 1.08000 * 119.97285 * 180.27154 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1980 0.0000 4 6 3.5786 1.2007 0.0005 5 6 4.2734 -0.0001 0.0005 6 8 5.6325 -0.0001 0.0016 7 6 6.2813 1.2675 -0.1173 8 1 5.6651 1.9361 -0.7185 9 6 6.4806 1.8710 1.2744 10 6 7.6213 1.0854 -0.7825 11 8 8.0851 -0.0270 -0.9176 12 7 8.3044 2.1589 -1.2270 13 6 7.7411 3.4073 -1.1567 14 1 6.6712 3.5229 -1.2472 15 6 8.5467 4.5230 -0.9691 16 7 8.1087 5.7145 -1.3090 17 14 10.2529 4.3301 -0.2335 18 1 11.2288 4.0431 -1.3154 19 1 10.6379 5.5854 0.4601 20 1 10.2486 3.2083 0.7395 21 6 9.5868 1.9997 -1.7598 22 6 10.5689 1.3441 -1.0273 23 6 11.8335 1.1848 -1.5585 24 6 12.1259 1.6854 -2.8142 25 6 11.1524 2.3431 -3.5440 26 6 9.8843 2.5017 -3.0210 27 6 3.5786 -1.2008 -0.0056 28 6 2.1971 -1.1981 0.0001 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 1.6559 2.1326 -0.0004 33 1 4.1173 2.1368 0.0001 34 1 7.0364 2.8047 1.1894 35 1 7.0382 1.1716 1.8974 36 1 5.5090 2.0666 1.7281 37 1 8.6715 6.4937 -1.1783 38 1 10.3423 0.9562 -0.0451 39 1 12.5962 0.6721 -0.9913 40 1 13.1169 1.5628 -3.2257 41 1 11.3842 2.7331 -4.5240 42 1 9.1247 3.0158 -3.5912 43 1 4.1172 -2.1370 -0.0102 44 1 1.6557 -2.1326 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072680081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:42 Heat of formation + Delta-G solvation = -4.813215 kcal Electronic energy + Delta-G solvation = -27458.866423 eV Core-core repulsion = 23728.134803 eV Total energy + Delta-G solvation = -3730.731620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.40294 -39.63374 -38.04546 -36.99931 -35.04506 -32.31370 -32.25834 -31.27329 -30.63029 -30.33365 -28.91624 -26.33273 -25.30116 -24.10106 -22.91867 -22.04766 -21.78676 -20.83329 -19.17169 -18.40889 -17.73759 -16.55511 -15.96944 -15.49681 -15.42852 -15.16311 -15.07265 -14.61799 -14.25073 -14.12405 -13.80531 -13.64999 -13.36540 -13.19652 -13.09073 -12.86197 -12.73095 -12.57554 -12.26227 -12.19293 -11.88470 -11.71407 -11.38338 -11.31932 -11.14978 -10.97753 -10.79862 -10.63048 -10.56021 -10.40303 -10.09912 -9.47164 -8.92383 -8.84847 -8.62920 -8.30289 -7.82887 -7.63011 -6.69907 -4.31451 1.46869 1.56204 1.86097 2.00176 3.07332 3.18872 3.22342 3.28815 3.43403 3.88642 4.06027 4.31642 4.37142 4.81597 4.91856 4.93665 5.06213 5.26025 5.35824 5.43099 5.46305 5.47909 5.51669 5.56206 5.57652 5.63645 5.69260 5.83302 5.90425 6.02061 6.08563 6.13369 6.16213 6.21337 6.30601 6.44575 6.55600 6.59251 6.63447 6.70275 6.89278 6.94477 7.05507 7.08458 7.18700 7.54506 7.69866 7.77694 8.05355 8.66017 9.03888 9.33627 10.37321 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.003631 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.789715 B = 7710.361623 C = 8467.973928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.138 4.138 3 C -0.079 4.079 4 C -0.207 4.207 5 C 0.136 3.864 6 O -0.292 6.292 7 C 0.086 3.914 8 H 0.098 0.902 9 C -0.166 4.166 10 C 0.487 3.513 11 O -0.555 6.555 12 N -0.414 5.414 13 C -0.364 4.364 14 H 0.112 0.888 15 C 0.084 3.916 16 N -0.845 5.845 17 Si 0.857 3.143 18 H -0.252 1.252 19 H -0.289 1.289 20 H -0.259 1.259 21 C 0.159 3.841 22 C -0.128 4.128 23 C -0.114 4.114 24 C -0.146 4.146 25 C -0.113 4.113 26 C -0.115 4.115 27 C -0.153 4.153 28 C -0.083 4.083 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.279 0.721 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.155 -5.664 1.833 8.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.138 4.138 3 C -0.097 4.097 4 C -0.226 4.226 5 C 0.090 3.910 6 O -0.204 6.204 7 C 0.027 3.973 8 H 0.116 0.884 9 C -0.223 4.223 10 C 0.276 3.724 11 O -0.436 6.436 12 N -0.130 5.130 13 C -0.489 4.489 14 H 0.129 0.871 15 C -0.126 4.126 16 N -0.478 5.478 17 Si 0.682 3.318 18 H -0.176 1.176 19 H -0.216 1.216 20 H -0.183 1.183 21 C 0.066 3.934 22 C -0.148 4.148 23 C -0.133 4.133 24 C -0.164 4.164 25 C -0.131 4.131 26 C -0.135 4.135 27 C -0.172 4.172 28 C -0.101 4.101 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.140 0.860 33 H 0.153 0.847 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.826 -6.156 1.783 8.661 hybrid contribution 0.797 0.567 0.371 1.046 sum -5.029 -5.589 2.154 7.821 Atomic orbital electron populations 1.20673 0.91414 1.02269 1.01863 1.19763 0.95942 0.93150 1.04951 1.20811 0.93292 0.97544 0.98014 1.21433 0.95348 0.97781 1.08032 1.19149 0.82922 0.94080 0.94832 1.86176 1.15404 1.31936 1.86903 1.22041 0.93034 0.83575 0.98651 0.88409 1.22176 1.02968 1.02968 0.94223 1.20041 0.87206 0.84665 0.80438 1.90626 1.70516 1.24460 1.57952 1.41382 1.12398 1.07549 1.51625 1.19100 0.95176 0.80071 1.54535 0.87069 1.25191 0.98545 0.94568 0.94319 1.69747 1.38669 0.99221 1.40171 0.87127 0.84858 0.78002 0.81775 1.17643 1.21601 1.18345 1.17757 0.86027 0.97357 0.92214 1.21100 0.92705 1.01132 0.99901 1.20847 0.96060 1.00422 0.95987 1.20938 0.99031 1.00976 0.95491 1.20902 0.93116 0.99493 0.99614 1.21129 0.97359 1.01146 0.93898 1.20426 0.93663 0.96441 1.06633 1.20770 0.92915 0.97531 0.98914 0.91712 0.91984 0.91921 0.85974 0.84717 0.88322 0.91913 0.91878 0.91017 0.86354 0.86515 0.86764 0.86384 0.85221 0.85316 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.00 0.36 -0.58 16 2 C -0.14 -1.68 5.88 -104.60 -0.62 -2.29 16 3 C -0.08 -1.04 9.69 -39.61 -0.38 -1.42 16 4 C -0.21 -3.19 8.46 -39.43 -0.33 -3.52 16 5 C 0.14 2.32 6.64 -39.22 -0.26 2.06 16 6 O -0.29 -5.80 9.35 -39.05 -0.37 -6.16 16 7 C 0.09 1.71 1.89 -27.88 -0.05 1.66 16 8 H 0.10 1.88 4.79 -51.93 -0.25 1.63 16 9 C -0.17 -2.95 9.19 37.16 0.34 -2.61 16 10 C 0.49 11.38 6.72 -10.98 -0.07 11.31 16 11 O -0.56 -14.30 15.68 -14.04 -0.22 -14.52 16 12 N -0.41 -9.77 2.47 -58.98 -0.15 -9.91 16 13 C -0.36 -8.81 7.49 -14.94 -0.11 -8.92 16 14 H 0.11 2.73 6.71 -52.49 -0.35 2.38 16 15 C 0.08 2.09 5.08 -17.49 -0.09 2.01 16 16 N -0.85 -21.83 13.96 55.49 0.77 -21.05 16 17 Si 0.86 19.85 23.79 -169.99 -4.04 15.80 16 18 H -0.25 -5.80 6.24 56.52 0.35 -5.45 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.26 -6.04 6.61 56.52 0.37 -5.67 16 21 C 0.16 3.66 2.55 -83.70 -0.21 3.45 16 22 C -0.13 -2.78 6.20 -39.37 -0.24 -3.02 16 23 C -0.11 -2.12 10.04 -39.61 -0.40 -2.51 16 24 C -0.15 -2.51 10.04 -39.53 -0.40 -2.91 16 25 C -0.11 -2.05 9.75 -39.61 -0.39 -2.44 16 26 C -0.12 -2.46 8.02 -39.37 -0.32 -2.77 16 27 C -0.15 -2.28 9.99 -39.43 -0.39 -2.67 16 28 C -0.08 -1.04 9.69 -39.60 -0.38 -1.42 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 33 H 0.14 2.05 5.53 -52.49 -0.29 1.76 16 34 H 0.10 1.87 6.76 -51.93 -0.35 1.52 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.97 7.29 -51.93 -0.38 0.59 16 37 H 0.28 6.83 8.31 -40.82 -0.34 6.50 16 38 H 0.12 2.61 7.87 -52.49 -0.41 2.20 16 39 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.13 2.78 8.01 -52.49 -0.42 2.36 16 43 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 44 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 358.60 15.07 5.40 5.40 Total: -1.00 -29.25 358.60 -8.43 -37.68 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -5.89 Total: 9.38 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -3.95 Total: -16.62 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.63 Total: -30.97 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.59 Total: -20.69 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.04 Total: 15.80 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.25 -8.43 -37.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072680081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.868 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds