Wall clock time and date at job start Tue Mar 31 2020 13:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38265 * 119.94909 * 2 1 4 4 C 1.38136 * 120.06088 * 179.97438 * 3 2 1 5 5 C 1.38736 * 119.94128 * 0.02562 * 4 3 2 6 6 O 1.35909 * 120.05328 * 180.02562 * 5 4 3 7 7 C 1.42894 * 116.99856 * 354.59454 * 6 5 4 8 8 H 1.09003 * 109.47201 * 328.60444 * 7 6 5 9 9 C 1.52996 * 109.47507 * 88.60918 * 7 6 5 10 10 C 1.50706 * 109.46798 * 208.60756 * 7 6 5 11 11 O 1.21280 * 119.99838 * 347.58653 * 10 7 6 12 12 N 1.34779 * 120.00072 * 167.59331 * 10 7 6 13 13 C 1.37135 * 119.99837 * 355.56928 * 12 10 7 14 14 H 1.08000 * 120.00479 * 328.46202 * 13 12 10 15 15 C 1.38892 * 120.00026 * 148.46190 * 13 12 10 16 16 N 1.31418 * 120.00285 * 158.73953 * 15 13 12 17 17 Si 1.86802 * 119.99794 * 338.74226 * 15 13 12 18 18 H 1.48501 * 109.47064 * 87.25167 * 17 15 13 19 19 H 1.48498 * 109.47161 * 207.24932 * 17 15 13 20 20 H 1.48496 * 109.47341 * 327.25229 * 17 15 13 21 21 C 1.39783 * 119.99911 * 175.57616 * 12 10 7 22 22 C 1.38958 * 120.07650 * 306.14797 * 21 12 10 23 23 C 1.38092 * 119.92370 * 179.79164 * 22 21 12 24 24 C 1.38308 * 120.07217 * 0.46563 * 23 22 21 25 25 C 1.38308 * 120.16035 * 359.78966 * 24 23 22 26 26 C 1.38087 * 120.07683 * 359.97438 * 25 24 23 27 27 C 1.38722 * 119.89094 * 0.26858 * 5 4 3 28 28 C 1.38154 * 119.94173 * 359.43062 * 27 5 4 29 29 H 1.08997 * 109.46969 * 89.99772 * 1 2 3 30 30 H 1.08996 * 109.47307 * 210.00254 * 1 2 3 31 31 H 1.09003 * 109.46783 * 330.00406 * 1 2 3 32 32 H 1.08005 * 119.96987 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.03119 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.47341 * 176.11540 * 9 7 6 35 35 H 1.09003 * 109.47385 * 56.11118 * 9 7 6 36 36 H 1.08998 * 109.46877 * 296.11208 * 9 7 6 37 37 H 0.97004 * 120.00095 * 180.02562 * 16 15 13 38 38 H 1.07998 * 120.04306 * 0.02562 * 22 21 12 39 39 H 1.07992 * 119.96611 * 180.23049 * 23 22 21 40 40 H 1.08001 * 119.92026 * 179.76050 * 24 23 22 41 41 H 1.07995 * 119.96516 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.03872 * 179.97438 * 26 25 24 43 43 H 1.08003 * 120.03232 * 179.72217 * 27 5 4 44 44 H 1.08000 * 119.97285 * 180.27154 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1980 0.0000 4 6 3.5786 1.2007 0.0005 5 6 4.2734 -0.0001 0.0005 6 8 5.6325 -0.0001 0.0016 7 6 6.2813 1.2675 -0.1173 8 1 5.6651 1.9361 -0.7185 9 6 6.4806 1.8710 1.2744 10 6 7.6213 1.0854 -0.7825 11 8 8.0851 -0.0270 -0.9176 12 7 8.3044 2.1589 -1.2270 13 6 7.7411 3.4073 -1.1567 14 1 6.6712 3.5229 -1.2472 15 6 8.5467 4.5230 -0.9691 16 7 8.1087 5.7145 -1.3090 17 14 10.2529 4.3301 -0.2335 18 1 11.2288 4.0431 -1.3154 19 1 10.6379 5.5854 0.4601 20 1 10.2486 3.2083 0.7395 21 6 9.5868 1.9997 -1.7598 22 6 10.5689 1.3441 -1.0273 23 6 11.8335 1.1848 -1.5585 24 6 12.1259 1.6854 -2.8142 25 6 11.1524 2.3431 -3.5440 26 6 9.8843 2.5017 -3.0210 27 6 3.5786 -1.2008 -0.0056 28 6 2.1971 -1.1981 0.0001 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 1.6559 2.1326 -0.0004 33 1 4.1173 2.1368 0.0001 34 1 7.0364 2.8047 1.1894 35 1 7.0382 1.1716 1.8974 36 1 5.5090 2.0666 1.7281 37 1 8.6715 6.4937 -1.1783 38 1 10.3423 0.9562 -0.0451 39 1 12.5962 0.6721 -0.9913 40 1 13.1169 1.5628 -3.2257 41 1 11.3842 2.7331 -4.5240 42 1 9.1247 3.0158 -3.5912 43 1 4.1172 -2.1370 -0.0102 44 1 1.6557 -2.1326 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072680081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:42 Heat of formation + Delta-G solvation = -19.082990 kcal Electronic energy + Delta-G solvation = -27459.485207 eV Core-core repulsion = 23728.134803 eV Total energy + Delta-G solvation = -3731.350404 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.97777 -41.02954 -39.48623 -38.40358 -36.86603 -34.16455 -33.58087 -32.44641 -31.86585 -31.80247 -30.47987 -27.37638 -27.13238 -25.62321 -24.16548 -23.53470 -23.18718 -22.05185 -20.91545 -19.97928 -19.21319 -18.14803 -17.69406 -17.08432 -16.83503 -16.64552 -16.28885 -16.16962 -15.80269 -15.37175 -15.23204 -14.95539 -14.74553 -14.52236 -14.47716 -14.37479 -14.26706 -14.04945 -13.88905 -13.36816 -13.26965 -12.98349 -12.85492 -12.61020 -12.54543 -12.49938 -12.38970 -12.17214 -11.96015 -11.81097 -11.65922 -11.28211 -10.67346 -10.45146 -9.96076 -9.84999 -9.32356 -8.99364 -8.63494 -6.25068 0.29891 0.38161 0.44664 0.45625 1.21627 1.32942 1.39295 1.61001 1.76439 2.17660 2.68796 2.78037 2.79160 3.01287 3.65785 3.81597 3.90508 3.97638 3.99968 4.03637 4.08271 4.11777 4.25738 4.36015 4.45991 4.53444 4.56898 4.62434 4.65820 4.69830 4.76292 4.86053 4.92809 5.08820 5.10546 5.12499 5.20345 5.28488 5.39170 5.43427 5.48318 5.54326 5.56184 5.68671 5.86105 5.90063 5.95930 6.23532 6.42203 6.77348 7.17063 7.51181 8.46723 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.003631 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.789715 B = 7710.361623 C = 8467.973928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.130 4.130 3 C -0.085 4.085 4 C -0.218 4.218 5 C 0.099 3.901 6 O -0.316 6.316 7 C 0.095 3.905 8 H 0.098 0.902 9 C -0.155 4.155 10 C 0.476 3.524 11 O -0.588 6.588 12 N -0.418 5.418 13 C -0.356 4.356 14 H 0.099 0.901 15 C 0.061 3.939 16 N -0.875 5.875 17 Si 0.899 3.101 18 H -0.246 1.246 19 H -0.290 1.290 20 H -0.269 1.269 21 C 0.124 3.876 22 C -0.150 4.150 23 C -0.114 4.114 24 C -0.132 4.132 25 C -0.109 4.109 26 C -0.137 4.137 27 C -0.164 4.164 28 C -0.080 4.080 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.283 0.717 38 H 0.101 0.899 39 H 0.152 0.848 40 H 0.163 0.837 41 H 0.155 0.845 42 H 0.116 0.884 43 H 0.130 0.870 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 -6.251 1.419 8.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.131 4.131 3 C -0.102 4.102 4 C -0.236 4.236 5 C 0.054 3.946 6 O -0.229 6.229 7 C 0.036 3.964 8 H 0.115 0.885 9 C -0.212 4.212 10 C 0.267 3.733 11 O -0.472 6.472 12 N -0.134 5.134 13 C -0.482 4.482 14 H 0.117 0.883 15 C -0.147 4.147 16 N -0.510 5.510 17 Si 0.724 3.276 18 H -0.170 1.170 19 H -0.217 1.217 20 H -0.194 1.194 21 C 0.032 3.968 22 C -0.170 4.170 23 C -0.133 4.133 24 C -0.150 4.150 25 C -0.128 4.128 26 C -0.156 4.156 27 C -0.183 4.183 28 C -0.098 4.098 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.163 0.837 33 H 0.145 0.855 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.169 0.831 40 H 0.180 0.820 41 H 0.172 0.828 42 H 0.135 0.865 43 H 0.148 0.852 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.864 -6.734 1.361 9.032 hybrid contribution 0.751 0.640 0.426 1.075 sum -5.113 -6.094 1.787 8.153 Atomic orbital electron populations 1.20753 0.88562 1.03771 1.02996 1.20241 0.97969 0.92453 1.02394 1.21142 0.92419 0.99253 0.97435 1.21479 0.96495 0.96930 1.08716 1.19489 0.81808 0.95635 0.97699 1.86118 1.17340 1.31566 1.87913 1.21871 0.91317 0.84060 0.99145 0.88468 1.22080 1.04039 1.01814 0.93308 1.20649 0.88304 0.84178 0.80167 1.90573 1.71646 1.25443 1.59493 1.41455 1.13018 1.07179 1.51769 1.18992 0.94740 0.80529 1.53898 0.88328 1.25503 1.00418 0.94311 0.94459 1.69781 1.39790 0.99734 1.41674 0.86475 0.82884 0.77191 0.81064 1.16989 1.21660 1.19425 1.18099 0.85893 0.99378 0.93463 1.21186 0.94199 1.01954 0.99649 1.21325 0.95324 0.99763 0.96867 1.21506 1.00716 0.98413 0.94380 1.21379 0.91810 0.98531 1.01056 1.21238 0.98853 1.01932 0.93628 1.20669 0.94922 0.95807 1.06876 1.21163 0.91867 0.99263 0.97459 0.90595 0.90253 0.90780 0.83740 0.85451 0.89788 0.92151 0.89442 0.90681 0.88050 0.83058 0.81968 0.82784 0.86547 0.85230 0.82520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 10.01 71.24 0.71 -0.77 16 2 C -0.13 -2.86 5.88 -19.85 -0.12 -2.98 16 3 C -0.08 -2.12 9.69 22.25 0.22 -1.91 16 4 C -0.22 -6.81 8.46 22.36 0.19 -6.62 16 5 C 0.10 3.47 6.64 22.50 0.15 3.62 16 6 O -0.32 -13.26 9.35 -73.79 -0.69 -13.95 16 7 C 0.10 4.01 1.89 29.85 0.06 4.07 16 8 H 0.10 4.02 4.79 -2.39 -0.01 4.01 16 9 C -0.15 -5.79 9.19 71.98 0.66 -5.13 16 10 C 0.48 23.52 6.72 87.66 0.59 24.11 16 11 O -0.59 -31.97 15.68 15.71 0.25 -31.72 16 12 N -0.42 -20.64 2.47 -458.89 -1.13 -21.78 16 13 C -0.36 -17.99 7.49 84.02 0.63 -17.36 16 14 H 0.10 5.13 6.71 -2.91 -0.02 5.11 16 15 C 0.06 3.10 5.08 84.91 0.43 3.54 16 16 N -0.88 -46.12 13.96 21.65 0.30 -45.82 16 17 Si 0.90 41.48 23.79 68.60 1.63 43.11 16 18 H -0.25 -10.95 6.24 99.48 0.62 -10.33 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 20 H -0.27 -12.74 6.61 99.48 0.66 -12.08 16 21 C 0.12 5.78 2.55 38.22 0.10 5.88 16 22 C -0.15 -6.51 6.20 22.41 0.14 -6.37 16 23 C -0.11 -3.95 10.04 22.25 0.22 -3.72 16 24 C -0.13 -4.02 10.04 22.30 0.22 -3.79 16 25 C -0.11 -3.70 9.75 22.25 0.22 -3.48 16 26 C -0.14 -5.82 8.02 22.41 0.18 -5.64 16 27 C -0.16 -4.90 9.99 22.37 0.22 -4.67 16 28 C -0.08 -1.84 9.69 22.26 0.22 -1.62 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 31 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 32 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 33 H 0.13 4.06 5.53 -2.91 -0.02 4.04 16 34 H 0.08 3.36 6.76 -2.39 -0.02 3.35 16 35 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.09 2.77 7.29 -2.39 -0.02 2.75 16 37 H 0.28 14.04 8.31 -92.70 -0.77 13.27 16 38 H 0.10 4.64 7.87 -2.91 -0.02 4.62 16 39 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 40 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 41 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 42 H 0.12 5.14 8.01 -2.91 -0.02 5.11 16 43 H 0.13 3.71 8.06 -2.91 -0.02 3.68 16 44 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -66.45 358.60 6.27 -60.18 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.87 Total: 32.83 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 5.04 Total: -22.85 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: -0.83 Total: -67.60 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -0.44 Total: -45.67 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.63 Total: 43.11 kcal Total: -66.45 6.27 -60.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072680081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.101 kcal (2) G-P(sol) polarization free energy of solvation -66.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds