Wall clock time and date at job start Tue Mar 31 2020 13:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38288 * 119.96895 * 2 1 4 4 C 1.38246 * 120.10789 * 180.23164 * 3 2 1 5 5 C 1.38164 * 120.05799 * 359.48962 * 4 3 2 6 6 C 1.38713 * 119.94352 * 0.24624 * 5 4 3 7 7 O 1.35901 * 120.05867 * 180.02562 * 6 5 4 8 8 C 1.42900 * 116.99759 * 356.27837 * 7 6 5 9 9 H 1.08999 * 109.47134 * 36.47657 * 8 7 6 10 10 C 1.52998 * 109.46912 * 156.46955 * 8 7 6 11 11 C 1.50700 * 109.47366 * 276.47384 * 8 7 6 12 12 O 1.21277 * 120.00007 * 349.98353 * 11 8 7 13 13 N 1.34779 * 119.99848 * 169.98713 * 11 8 7 14 14 C 1.37140 * 119.99842 * 6.61816 * 13 11 8 15 15 H 1.07991 * 120.00393 * 298.00787 * 14 13 11 16 16 C 1.38895 * 119.99545 * 118.01329 * 14 13 11 17 17 N 1.31417 * 119.99890 * 177.95162 * 16 14 13 18 18 Si 1.86803 * 120.00123 * 357.94144 * 16 14 13 19 19 H 1.48498 * 109.47020 * 91.96518 * 18 16 14 20 20 H 1.48494 * 109.47251 * 211.96535 * 18 16 14 21 21 H 1.48500 * 109.47122 * 331.96903 * 18 16 14 22 22 C 1.39789 * 119.99822 * 186.62508 * 13 11 8 23 23 C 1.38959 * 120.07662 * 7.24540 * 22 13 11 24 24 C 1.38081 * 119.91938 * 179.74469 * 23 22 13 25 25 C 1.38304 * 120.07825 * 0.53440 * 24 23 22 26 26 C 1.38311 * 120.15740 * 359.71820 * 25 24 23 27 27 C 1.38084 * 120.07687 * 0.02562 * 26 25 24 28 28 C 1.38122 * 119.97442 * 179.71437 * 2 1 3 29 29 H 1.09005 * 109.47294 * 270.27792 * 1 2 3 30 30 H 1.08997 * 109.47172 * 30.27913 * 1 2 3 31 31 H 1.09002 * 109.47370 * 150.28465 * 1 2 3 32 32 H 1.07995 * 119.94887 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.97536 * 179.76202 * 4 3 2 34 34 H 1.07996 * 120.03204 * 180.27610 * 5 4 3 35 35 H 1.08992 * 109.47593 * 296.78868 * 10 8 7 36 36 H 1.09001 * 109.46824 * 56.78844 * 10 8 7 37 37 H 1.09003 * 109.47201 * 176.78446 * 10 8 7 38 38 H 0.97005 * 120.00241 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.04064 * 359.97438 * 23 22 13 40 40 H 1.08002 * 119.96172 * 180.24946 * 24 23 22 41 41 H 1.08001 * 119.92310 * 179.70441 * 25 24 23 42 42 H 1.08004 * 119.96234 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.03969 * 179.97438 * 27 26 25 44 44 H 1.07998 * 120.02579 * 0.05127 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2013 -0.0048 5 6 4.2752 0.0072 0.0010 6 6 3.5846 -1.1958 0.0065 7 8 4.2658 -2.3717 0.0127 8 6 5.6904 -2.2965 -0.0694 9 1 6.0415 -1.4299 0.4908 10 6 6.3031 -3.5679 0.5214 11 6 6.1041 -2.1631 -1.5124 12 8 5.2861 -2.3167 -2.3944 13 7 7.3833 -1.8733 -1.8226 14 6 8.3358 -1.8335 -0.8368 15 1 8.2520 -1.1167 -0.0334 16 6 9.4085 -2.7152 -0.8717 17 7 10.3425 -2.6505 0.0506 18 14 9.5235 -3.9930 -2.2295 19 1 10.3127 -3.4433 -3.3609 20 1 10.1908 -5.2121 -1.7066 21 1 8.1583 -4.3392 -2.7003 22 6 7.7390 -1.6130 -3.1492 23 6 6.7559 -1.5039 -4.1252 24 6 7.1105 -1.2415 -5.4336 25 6 8.4430 -1.0983 -5.7753 26 6 9.4245 -1.2114 -4.8073 27 6 9.0768 -1.4685 -3.4959 28 6 2.1970 -1.1965 0.0060 29 1 -0.3634 0.0050 1.0277 30 1 -0.3633 0.8874 -0.5181 31 1 -0.3634 -0.8925 -0.5094 32 1 1.6564 2.1325 -0.0004 33 1 4.1175 2.1382 -0.0087 34 1 5.3551 0.0104 0.0017 35 1 6.0511 -3.6348 1.5797 36 1 5.9080 -4.4387 -0.0018 37 1 7.3866 -3.5361 0.4072 38 1 11.0915 -3.2665 0.0264 39 1 5.7155 -1.6205 -3.8600 40 1 6.3467 -1.1526 -6.1920 41 1 8.7179 -0.8978 -6.8003 42 1 10.4641 -1.0986 -5.0775 43 1 9.8437 -1.5571 -2.7407 44 1 1.6571 -2.1317 0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072680084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:48 Heat of formation + Delta-G solvation = -8.508256 kcal Electronic energy + Delta-G solvation = -28028.577317 eV Core-core repulsion = 24297.685468 eV Total energy + Delta-G solvation = -3730.891849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.24311 -40.97887 -39.40596 -38.33697 -37.06873 -34.25221 -33.53319 -33.33850 -31.79184 -30.94587 -30.17384 -27.92170 -27.34167 -25.57630 -23.87425 -23.48020 -23.15393 -22.12750 -21.10838 -19.94890 -19.05860 -18.26667 -17.78265 -17.36127 -16.93089 -16.89065 -16.47317 -16.14845 -15.63343 -15.37044 -15.10270 -14.96892 -14.84023 -14.53352 -14.45075 -14.30331 -14.09767 -13.90485 -13.86965 -13.55442 -13.18292 -13.09355 -12.93835 -12.68662 -12.56757 -12.45159 -12.39231 -12.22149 -12.18136 -11.74996 -11.64119 -11.30623 -10.91024 -10.27906 -9.75924 -9.72141 -9.15236 -8.85480 -8.53562 -6.61959 0.32305 0.37061 0.46949 0.49600 1.17881 1.26109 1.35332 1.64897 1.90603 2.08686 2.47530 2.66657 2.79009 3.01839 3.63418 3.74644 3.83451 3.93328 4.06804 4.12035 4.15144 4.18998 4.31371 4.40662 4.41526 4.53238 4.62308 4.71090 4.74756 4.75049 4.81177 4.84845 4.87968 5.01889 5.17859 5.21999 5.25198 5.37416 5.43884 5.48310 5.54810 5.61686 5.62970 5.67322 5.84517 5.91221 5.98677 6.29574 6.36334 6.76873 7.09166 7.42689 8.45363 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014602 B = 0.004574 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.124886 B = 6119.550624 C = 7173.982049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.050 4.050 3 C -0.162 4.162 4 C -0.080 4.080 5 C -0.236 4.236 6 C 0.117 3.883 7 O -0.306 6.306 8 C 0.095 3.905 9 H 0.102 0.898 10 C -0.139 4.139 11 C 0.476 3.524 12 O -0.562 6.562 13 N -0.418 5.418 14 C -0.363 4.363 15 H 0.091 0.909 16 C 0.072 3.928 17 N -0.877 5.877 18 Si 0.902 3.098 19 H -0.238 1.238 20 H -0.280 1.280 21 H -0.289 1.289 22 C 0.128 3.872 23 C -0.201 4.201 24 C -0.104 4.104 25 C -0.153 4.153 26 C -0.106 4.106 27 C -0.178 4.178 28 C -0.169 4.169 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.286 0.714 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.156 0.844 42 H 0.145 0.855 43 H 0.123 0.877 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.566 5.034 -1.869 11.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.050 4.050 3 C -0.179 4.179 4 C -0.098 4.098 5 C -0.255 4.255 6 C 0.072 3.928 7 O -0.218 6.218 8 C 0.036 3.964 9 H 0.119 0.881 10 C -0.196 4.196 11 C 0.268 3.732 12 O -0.444 6.444 13 N -0.130 5.130 14 C -0.490 4.490 15 H 0.108 0.892 16 C -0.137 4.137 17 N -0.511 5.511 18 Si 0.728 3.272 19 H -0.162 1.162 20 H -0.206 1.206 21 H -0.215 1.215 22 C 0.033 3.967 23 C -0.221 4.221 24 C -0.123 4.123 25 C -0.171 4.171 26 C -0.124 4.124 27 C -0.199 4.199 28 C -0.188 4.188 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.172 0.828 33 H 0.160 0.840 34 H 0.128 0.872 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.170 0.830 40 H 0.163 0.837 41 H 0.173 0.827 42 H 0.163 0.837 43 H 0.140 0.860 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.869 4.666 -2.093 12.012 hybrid contribution 1.022 -0.678 -0.276 1.257 sum -9.847 3.988 -2.369 10.884 Atomic orbital electron populations 1.20859 0.87994 1.03992 1.03706 1.20125 0.97902 0.91465 0.95497 1.21282 0.93525 0.98739 1.04402 1.21200 0.95165 0.97086 0.96305 1.21348 1.00059 0.93513 1.10593 1.19395 0.92795 0.84700 0.95940 1.86099 1.19206 1.29097 1.87444 1.22014 0.78716 1.03458 0.92256 0.88084 1.21842 1.02584 0.93292 1.01881 1.21893 0.82502 0.76434 0.92419 1.90303 1.53174 1.51659 1.49301 1.41420 1.07683 1.58768 1.05123 1.18734 1.04610 1.20655 1.04967 0.89176 1.25737 0.94735 0.96549 0.96659 1.69665 1.10824 1.37315 1.33302 0.86598 0.79041 0.79808 0.81723 1.16168 1.20619 1.21536 1.18825 0.94245 0.97753 0.85834 1.22480 1.01596 1.04282 0.93702 1.21386 0.97402 0.98229 0.95235 1.21401 0.92274 1.03025 1.00420 1.21263 1.00848 0.98696 0.91629 1.21193 0.94611 1.05780 0.98304 1.20520 0.90033 0.99972 1.08264 0.89377 0.89582 0.90993 0.82782 0.84011 0.87215 0.88829 0.92452 0.88701 0.90304 0.83040 0.83673 0.82679 0.83743 0.85969 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 10.01 71.24 0.71 -1.05 16 2 C -0.05 -1.24 5.88 -19.88 -0.12 -1.36 16 3 C -0.16 -3.90 9.70 22.28 0.22 -3.69 16 4 C -0.08 -2.28 10.04 22.25 0.22 -2.06 16 5 C -0.24 -8.45 8.84 22.37 0.20 -8.25 16 6 C 0.12 4.35 6.48 22.51 0.15 4.49 16 7 O -0.31 -12.50 9.38 -73.59 -0.69 -13.19 16 8 C 0.09 3.97 1.99 29.85 0.06 4.03 16 9 H 0.10 4.12 5.54 -2.39 -0.01 4.11 16 10 C -0.14 -5.38 9.41 71.98 0.68 -4.70 16 11 C 0.48 22.87 6.42 87.66 0.56 23.43 16 12 O -0.56 -28.86 12.97 15.82 0.21 -28.66 16 13 N -0.42 -20.54 2.07 -458.90 -0.95 -21.49 16 14 C -0.36 -18.18 6.36 84.02 0.53 -17.65 16 15 H 0.09 4.75 7.82 -2.92 -0.02 4.73 16 16 C 0.07 3.59 3.66 84.91 0.31 3.90 16 17 N -0.88 -44.98 13.96 21.65 0.30 -44.67 16 18 Si 0.90 42.04 24.04 68.60 1.65 43.69 16 19 H -0.24 -10.42 6.07 99.48 0.60 -9.81 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.29 -14.89 7.08 99.48 0.70 -14.19 16 22 C 0.13 6.12 5.19 38.22 0.20 6.32 16 23 C -0.20 -8.94 8.97 22.41 0.20 -8.73 16 24 C -0.10 -3.69 10.04 22.25 0.22 -3.47 16 25 C -0.15 -4.85 10.04 22.30 0.22 -4.63 16 26 C -0.11 -3.80 10.02 22.25 0.22 -3.58 16 27 C -0.18 -7.89 5.87 22.41 0.13 -7.76 16 28 C -0.17 -5.29 9.64 22.37 0.22 -5.07 16 29 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 31 H 0.07 1.11 8.08 -2.39 -0.02 1.10 16 32 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 33 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 34 H 0.11 4.22 5.76 -2.91 -0.02 4.20 16 35 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.09 4.09 5.41 -2.39 -0.01 4.07 16 38 H 0.29 13.74 8.31 -92.70 -0.77 12.97 16 39 H 0.15 7.30 4.72 -45.33 -0.21 7.09 16 40 H 0.15 4.13 8.06 -2.91 -0.02 4.10 16 41 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 42 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 43 H 0.12 5.75 4.74 -2.91 -0.01 5.74 16 44 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -63.23 352.48 6.17 -57.06 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: 0.71 Total: 37.10 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 4.94 Total: -29.83 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: -0.65 Total: -66.17 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -0.49 Total: -41.85 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.65 Total: 43.69 kcal Total: -63.23 6.17 -57.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072680084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.555 kcal (2) G-P(sol) polarization free energy of solvation -63.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds