Wall clock time and date at job start Tue Mar 31 2020 13:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38295 * 119.97059 * 2 1 4 4 C 1.38240 * 120.11068 * 179.97438 * 3 2 1 5 5 C 1.38164 * 120.05856 * 0.02562 * 4 3 2 6 6 C 1.38711 * 119.94359 * 0.02562 * 5 4 3 7 7 O 1.35896 * 120.05458 * 179.72255 * 6 5 4 8 8 C 1.42904 * 116.99908 * 185.49295 * 7 6 5 9 9 H 1.09001 * 109.46989 * 34.61672 * 8 7 6 10 10 C 1.52997 * 109.47033 * 274.61345 * 8 7 6 11 11 C 1.50698 * 109.46983 * 154.61567 * 8 7 6 12 12 O 1.21278 * 120.00575 * 7.63636 * 11 8 7 13 13 N 1.34782 * 119.99638 * 187.63371 * 11 8 7 14 14 C 1.37138 * 120.00364 * 4.78710 * 13 11 8 15 15 H 1.08002 * 119.99871 * 20.71739 * 14 13 11 16 16 C 1.38887 * 120.00069 * 200.72073 * 14 13 11 17 17 N 1.31423 * 120.00094 * 12.63760 * 16 14 13 18 18 Si 1.86800 * 119.99747 * 192.64319 * 16 14 13 19 19 H 1.48496 * 109.47205 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47380 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47227 * 239.99524 * 18 16 14 22 22 C 1.39790 * 119.99710 * 184.78815 * 13 11 8 23 23 C 1.38965 * 120.07531 * 247.66367 * 22 13 11 24 24 C 1.38082 * 119.92053 * 179.79404 * 23 22 13 25 25 C 1.38311 * 120.07774 * 0.45722 * 24 23 22 26 26 C 1.38308 * 120.15422 * 359.79512 * 25 24 23 27 27 C 1.38076 * 120.07977 * 359.97193 * 26 25 24 28 28 C 1.38123 * 119.97634 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46604 * 90.00069 * 1 2 3 30 30 H 1.09002 * 109.47176 * 209.99699 * 1 2 3 31 31 H 1.08993 * 109.47454 * 330.00087 * 1 2 3 32 32 H 1.07996 * 119.94161 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.96968 * 180.02562 * 4 3 2 34 34 H 1.08002 * 120.02578 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.47505 * 304.28255 * 10 8 7 36 36 H 1.09004 * 109.47162 * 64.28353 * 10 8 7 37 37 H 1.09000 * 109.47032 * 184.27338 * 10 8 7 38 38 H 0.97000 * 119.99758 * 184.97838 * 17 16 14 39 39 H 1.08007 * 120.03855 * 0.02562 * 23 22 13 40 40 H 1.08003 * 119.96102 * 180.23081 * 24 23 22 41 41 H 1.07997 * 119.91809 * 179.76939 * 25 24 23 42 42 H 1.07996 * 119.95834 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.04069 * 179.97438 * 27 26 25 44 44 H 1.08001 * 120.02632 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2014 0.0005 5 6 4.2752 0.0073 0.0005 6 6 3.5846 -1.1957 -0.0005 7 8 4.2659 -2.3716 -0.0062 8 6 3.4940 -3.5680 -0.1289 9 1 2.6355 -3.3819 -0.7743 10 6 3.0072 -4.0048 1.2542 11 6 4.3465 -4.6565 -0.7283 12 8 5.5343 -4.4751 -0.8932 13 7 3.7890 -5.8318 -1.0810 14 6 2.4316 -6.0027 -0.9864 15 1 1.7796 -5.1421 -0.9600 16 6 1.8954 -7.2824 -0.9244 17 7 2.6802 -8.3138 -0.7066 18 14 0.0588 -7.5375 -1.1509 19 1 -0.5985 -6.2258 -1.3804 20 1 -0.1777 -8.4215 -2.3204 21 1 -0.5075 -8.1678 0.0685 22 6 4.5945 -6.8766 -1.5433 23 6 4.5063 -7.2907 -2.8669 24 6 5.3065 -8.3203 -3.3212 25 6 6.1882 -8.9455 -2.4582 26 6 6.2748 -8.5394 -1.1390 27 6 5.4811 -7.5074 -0.6790 28 6 2.1971 -1.1965 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6564 2.1325 0.0004 33 1 4.1174 2.1383 0.0010 34 1 5.3552 0.0105 0.0014 35 1 3.8617 -4.1173 1.9214 36 1 2.3295 -3.2513 1.6556 37 1 2.4832 -4.9570 1.1709 38 1 2.3181 -9.2133 -0.7350 39 1 3.8153 -6.8054 -3.5403 40 1 5.2411 -8.6402 -4.3507 41 1 6.8101 -9.7529 -2.8154 42 1 6.9641 -9.0300 -0.4678 43 1 5.5490 -7.1910 0.3514 44 1 1.6571 -2.1318 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072680085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:51 Heat of formation + Delta-G solvation = -9.678333 kcal Electronic energy + Delta-G solvation = -27528.394663 eV Core-core repulsion = 23797.452076 eV Total energy + Delta-G solvation = -3730.942588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.27242 -39.32053 -37.76818 -36.75384 -34.85907 -32.77952 -31.83690 -31.24150 -29.91691 -29.71218 -28.60509 -26.83226 -25.21641 -24.14506 -22.59151 -21.58241 -21.40101 -20.96469 -19.28112 -18.11702 -17.48938 -16.35633 -15.84587 -15.56058 -15.36963 -15.13591 -14.74525 -14.50795 -14.37492 -13.96352 -13.72932 -13.60919 -13.10944 -13.05730 -12.92071 -12.63702 -12.44341 -12.24379 -11.92201 -11.83517 -11.69592 -11.52887 -11.35310 -11.27716 -11.18799 -11.02326 -10.65119 -10.61614 -10.46808 -10.34345 -10.27428 -9.47442 -8.73761 -8.61125 -8.35273 -7.91964 -7.89166 -7.53291 -6.35457 -4.20922 1.44263 1.60320 2.41279 2.46725 2.99262 3.10309 3.13488 3.33052 3.58251 3.89606 3.96671 4.60512 4.76172 4.82975 4.94062 5.01371 5.15894 5.32916 5.40199 5.46957 5.57647 5.58997 5.64696 5.72135 5.77208 5.79973 5.82414 5.86894 5.98870 6.14799 6.17331 6.27127 6.38854 6.51521 6.52625 6.55656 6.68680 6.70632 6.76035 6.96221 7.00026 7.16086 7.29797 7.42403 7.51890 7.68582 7.75780 7.91601 8.31442 8.85484 9.19114 9.62127 10.48900 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.004109 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.135085 B = 6812.393789 C = 8248.536191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 C -0.170 4.170 4 C -0.079 4.079 5 C -0.163 4.163 6 C 0.147 3.853 7 O -0.289 6.289 8 C 0.088 3.912 9 H 0.089 0.911 10 C -0.171 4.171 11 C 0.473 3.527 12 O -0.570 6.570 13 N -0.406 5.406 14 C -0.358 4.358 15 H 0.100 0.900 16 C 0.049 3.951 17 N -0.840 5.840 18 Si 0.916 3.084 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.279 1.279 22 C 0.242 3.758 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.149 4.149 26 C -0.117 4.117 27 C -0.085 4.085 28 C -0.214 4.214 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.273 0.727 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.354 8.901 0.946 9.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.049 4.049 3 C -0.189 4.189 4 C -0.097 4.097 5 C -0.182 4.182 6 C 0.100 3.900 7 O -0.201 6.201 8 C 0.029 3.971 9 H 0.107 0.893 10 C -0.228 4.228 11 C 0.262 3.738 12 O -0.453 6.453 13 N -0.123 5.123 14 C -0.484 4.484 15 H 0.118 0.882 16 C -0.160 4.160 17 N -0.474 5.474 18 Si 0.741 3.259 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.205 1.205 22 C 0.151 3.849 23 C -0.139 4.139 24 C -0.138 4.138 25 C -0.168 4.168 26 C -0.136 4.136 27 C -0.104 4.104 28 C -0.233 4.233 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.595 8.729 0.982 9.160 hybrid contribution -1.370 -0.503 -0.125 1.465 sum -3.965 8.226 0.857 9.172 Atomic orbital electron populations 1.20814 0.91264 1.02725 1.02416 1.19687 0.95836 0.92541 0.96798 1.20841 0.94180 0.97211 1.06630 1.20869 0.94051 0.97004 0.97814 1.20441 1.00460 0.89786 1.07484 1.19150 0.90528 0.86506 0.93817 1.86203 1.35474 1.11762 1.86645 1.22022 0.93577 0.82853 0.98692 0.89292 1.22267 1.01979 1.03943 0.94649 1.19663 0.87589 0.84208 0.82364 1.90618 1.15646 1.81224 1.57788 1.41153 1.06829 1.09333 1.54950 1.19569 0.79986 0.94171 1.54632 0.88213 1.25258 0.99985 0.95406 0.95331 1.69918 1.36035 0.99192 1.42255 0.86046 0.82573 0.78931 0.78302 1.19148 1.20325 1.20472 1.17102 0.89126 0.87734 0.90952 1.20906 0.99664 0.98386 0.94986 1.20675 0.97423 0.97127 0.98589 1.20733 1.00794 1.01013 0.94239 1.20683 0.99742 0.97630 0.95528 1.20777 0.96319 0.95168 0.98163 1.21291 0.93267 0.99125 1.09582 0.91047 0.91388 0.91589 0.86394 0.85738 0.85340 0.91872 0.92319 0.87902 0.91544 0.87333 0.87566 0.87723 0.87510 0.87729 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 10.01 36.00 0.36 -0.80 16 2 C -0.05 -0.63 5.88 -104.65 -0.62 -1.25 16 3 C -0.17 -2.05 9.70 -39.56 -0.38 -2.43 16 4 C -0.08 -0.98 10.04 -39.61 -0.40 -1.38 16 5 C -0.16 -2.45 9.99 -39.43 -0.39 -2.85 16 6 C 0.15 2.52 6.60 -39.22 -0.26 2.26 16 7 O -0.29 -5.87 9.34 -39.21 -0.37 -6.24 16 8 C 0.09 1.76 1.83 -27.89 -0.05 1.71 16 9 H 0.09 1.69 5.22 -51.93 -0.27 1.41 16 10 C -0.17 -3.06 9.01 37.16 0.33 -2.73 16 11 C 0.47 11.46 6.88 -10.98 -0.08 11.38 16 12 O -0.57 -15.53 16.28 -14.23 -0.23 -15.76 16 13 N -0.41 -9.87 2.69 -58.98 -0.16 -10.03 16 14 C -0.36 -8.35 7.26 -14.94 -0.11 -8.46 16 15 H 0.10 2.16 6.20 -52.49 -0.33 1.84 16 16 C 0.05 1.15 5.14 -17.49 -0.09 1.06 16 17 N -0.84 -20.73 10.65 55.49 0.59 -20.14 16 18 Si 0.92 18.25 29.57 -169.99 -5.03 13.22 16 19 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 C 0.24 5.90 2.52 -83.69 -0.21 5.69 16 23 C -0.12 -2.73 9.35 -39.37 -0.37 -3.10 16 24 C -0.12 -2.39 10.04 -39.61 -0.40 -2.79 16 25 C -0.15 -2.87 10.04 -39.53 -0.40 -3.26 16 26 C -0.12 -2.39 10.04 -39.61 -0.40 -2.79 16 27 C -0.08 -1.99 8.90 -39.37 -0.35 -2.34 16 28 C -0.21 -3.27 7.96 -39.43 -0.31 -3.58 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 31 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 32 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.06 0.90 6.92 -51.93 -0.36 0.54 16 37 H 0.10 1.95 6.28 -51.93 -0.33 1.63 16 38 H 0.27 6.52 8.32 -40.82 -0.34 6.18 16 39 H 0.11 2.42 8.06 -52.48 -0.42 2.00 16 40 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 43 H 0.10 2.50 8.06 -52.48 -0.42 2.08 16 44 H 0.13 1.97 5.39 -52.49 -0.28 1.69 16 LS Contribution 366.28 15.07 5.52 5.52 Total: -1.00 -29.10 366.28 -9.56 -38.65 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.77 Total: 10.43 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -4.11 Total: -15.66 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: 0.43 Total: -30.17 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.60 Total: -22.00 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.10 -9.56 -38.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072680085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.976 kcal (2) G-P(sol) polarization free energy of solvation -29.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds