Wall clock time and date at job start Tue Mar 31 2020 13:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38295 * 119.97059 * 2 1 4 4 C 1.38240 * 120.11068 * 179.97438 * 3 2 1 5 5 C 1.38164 * 120.05856 * 0.02562 * 4 3 2 6 6 C 1.38711 * 119.94359 * 0.02562 * 5 4 3 7 7 O 1.35896 * 120.05458 * 179.72255 * 6 5 4 8 8 C 1.42904 * 116.99908 * 185.49295 * 7 6 5 9 9 H 1.09001 * 109.46989 * 34.61672 * 8 7 6 10 10 C 1.52997 * 109.47033 * 274.61345 * 8 7 6 11 11 C 1.50698 * 109.46983 * 154.61567 * 8 7 6 12 12 O 1.21278 * 120.00575 * 7.63636 * 11 8 7 13 13 N 1.34782 * 119.99638 * 187.63371 * 11 8 7 14 14 C 1.37138 * 120.00364 * 4.78710 * 13 11 8 15 15 H 1.08002 * 119.99871 * 20.71739 * 14 13 11 16 16 C 1.38887 * 120.00069 * 200.72073 * 14 13 11 17 17 N 1.31423 * 120.00094 * 12.63760 * 16 14 13 18 18 Si 1.86800 * 119.99747 * 192.64319 * 16 14 13 19 19 H 1.48496 * 109.47205 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47380 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47227 * 239.99524 * 18 16 14 22 22 C 1.39790 * 119.99710 * 184.78815 * 13 11 8 23 23 C 1.38965 * 120.07531 * 247.66367 * 22 13 11 24 24 C 1.38082 * 119.92053 * 179.79404 * 23 22 13 25 25 C 1.38311 * 120.07774 * 0.45722 * 24 23 22 26 26 C 1.38308 * 120.15422 * 359.79512 * 25 24 23 27 27 C 1.38076 * 120.07977 * 359.97193 * 26 25 24 28 28 C 1.38123 * 119.97634 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46604 * 90.00069 * 1 2 3 30 30 H 1.09002 * 109.47176 * 209.99699 * 1 2 3 31 31 H 1.08993 * 109.47454 * 330.00087 * 1 2 3 32 32 H 1.07996 * 119.94161 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.96968 * 180.02562 * 4 3 2 34 34 H 1.08002 * 120.02578 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.47505 * 304.28255 * 10 8 7 36 36 H 1.09004 * 109.47162 * 64.28353 * 10 8 7 37 37 H 1.09000 * 109.47032 * 184.27338 * 10 8 7 38 38 H 0.97000 * 119.99758 * 184.97838 * 17 16 14 39 39 H 1.08007 * 120.03855 * 0.02562 * 23 22 13 40 40 H 1.08003 * 119.96102 * 180.23081 * 24 23 22 41 41 H 1.07997 * 119.91809 * 179.76939 * 25 24 23 42 42 H 1.07996 * 119.95834 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.04069 * 179.97438 * 27 26 25 44 44 H 1.08001 * 120.02632 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2014 0.0005 5 6 4.2752 0.0073 0.0005 6 6 3.5846 -1.1957 -0.0005 7 8 4.2659 -2.3716 -0.0062 8 6 3.4940 -3.5680 -0.1289 9 1 2.6355 -3.3819 -0.7743 10 6 3.0072 -4.0048 1.2542 11 6 4.3465 -4.6565 -0.7283 12 8 5.5343 -4.4751 -0.8932 13 7 3.7890 -5.8318 -1.0810 14 6 2.4316 -6.0027 -0.9864 15 1 1.7796 -5.1421 -0.9600 16 6 1.8954 -7.2824 -0.9244 17 7 2.6802 -8.3138 -0.7066 18 14 0.0588 -7.5375 -1.1509 19 1 -0.5985 -6.2258 -1.3804 20 1 -0.1777 -8.4215 -2.3204 21 1 -0.5075 -8.1678 0.0685 22 6 4.5945 -6.8766 -1.5433 23 6 4.5063 -7.2907 -2.8669 24 6 5.3065 -8.3203 -3.3212 25 6 6.1882 -8.9455 -2.4582 26 6 6.2748 -8.5394 -1.1390 27 6 5.4811 -7.5074 -0.6790 28 6 2.1971 -1.1965 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6564 2.1325 0.0004 33 1 4.1174 2.1383 0.0010 34 1 5.3552 0.0105 0.0014 35 1 3.8617 -4.1173 1.9214 36 1 2.3295 -3.2513 1.6556 37 1 2.4832 -4.9570 1.1709 38 1 2.3181 -9.2133 -0.7350 39 1 3.8153 -6.8054 -3.5403 40 1 5.2411 -8.6402 -4.3507 41 1 6.8101 -9.7529 -2.8154 42 1 6.9641 -9.0300 -0.4678 43 1 5.5490 -7.1910 0.3514 44 1 1.6571 -2.1318 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072680085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:50 Heat of formation + Delta-G solvation = -22.461546 kcal Electronic energy + Delta-G solvation = -27528.948985 eV Core-core repulsion = 23797.452076 eV Total energy + Delta-G solvation = -3731.496909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.76371 -40.84157 -39.23838 -38.24669 -36.69786 -33.93116 -33.61258 -32.65279 -31.58978 -30.86727 -30.25828 -27.77251 -27.04443 -25.69624 -23.95578 -23.24441 -22.63879 -22.30677 -21.04397 -19.74026 -18.89502 -17.95643 -17.29074 -17.05457 -16.73051 -16.65005 -16.38820 -16.10251 -15.95355 -15.28869 -15.09829 -14.85916 -14.61158 -14.31293 -14.21992 -14.10895 -13.98370 -13.52325 -13.38676 -13.27631 -13.16332 -12.92669 -12.86864 -12.72724 -12.57195 -12.30661 -12.24246 -12.06318 -11.98149 -11.83320 -11.69149 -11.24248 -10.49484 -10.15321 -9.74333 -9.58169 -9.28082 -9.10224 -8.13848 -6.06238 0.38623 0.50007 0.73841 0.77551 1.36823 1.46961 1.58071 1.79077 1.86173 2.31332 2.82212 2.97964 3.02997 3.27265 3.71661 3.87117 3.95957 4.03288 4.04628 4.20586 4.21474 4.26971 4.38285 4.39655 4.46265 4.63236 4.69301 4.74250 4.78539 4.84618 4.85726 4.87477 4.95895 5.06110 5.19491 5.29579 5.31337 5.35640 5.41538 5.51355 5.62385 5.66812 5.75712 5.78956 5.91904 5.97123 6.21683 6.42988 6.55950 7.02059 7.36983 7.79655 8.69416 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.004109 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.135085 B = 6812.393789 C = 8248.536191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.052 4.052 3 C -0.162 4.162 4 C -0.073 4.073 5 C -0.181 4.181 6 C 0.109 3.891 7 O -0.318 6.318 8 C 0.100 3.900 9 H 0.097 0.903 10 C -0.157 4.157 11 C 0.454 3.546 12 O -0.616 6.616 13 N -0.408 5.408 14 C -0.369 4.369 15 H 0.112 0.888 16 C 0.012 3.988 17 N -0.864 5.864 18 Si 0.981 3.019 19 H -0.253 1.253 20 H -0.282 1.282 21 H -0.279 1.279 22 C 0.214 3.786 23 C -0.144 4.144 24 C -0.116 4.116 25 C -0.143 4.143 26 C -0.118 4.118 27 C -0.114 4.114 28 C -0.226 4.226 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.124 0.876 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.271 0.729 39 H 0.102 0.898 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.136 0.864 43 H 0.082 0.918 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 9.848 0.361 11.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.052 4.052 3 C -0.180 4.180 4 C -0.090 4.090 5 C -0.200 4.200 6 C 0.064 3.936 7 O -0.232 6.232 8 C 0.041 3.959 9 H 0.115 0.885 10 C -0.215 4.215 11 C 0.244 3.756 12 O -0.502 6.502 13 N -0.124 5.124 14 C -0.494 4.494 15 H 0.130 0.870 16 C -0.194 4.194 17 N -0.499 5.499 18 Si 0.804 3.196 19 H -0.176 1.176 20 H -0.207 1.207 21 H -0.205 1.205 22 C 0.123 3.877 23 C -0.164 4.164 24 C -0.134 4.134 25 C -0.161 4.161 26 C -0.136 4.136 27 C -0.134 4.134 28 C -0.244 4.244 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.172 0.828 33 H 0.176 0.824 34 H 0.142 0.858 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.160 0.840 41 H 0.167 0.833 42 H 0.153 0.847 43 H 0.100 0.900 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.441 9.686 0.398 10.664 hybrid contribution -0.760 -0.749 0.038 1.067 sum -5.201 8.938 0.436 10.350 Atomic orbital electron populations 1.20883 0.88951 1.03944 1.03323 1.20104 0.97579 0.92009 0.95537 1.21313 0.94142 0.98256 1.04326 1.21271 0.94621 0.97103 0.96044 1.20676 1.00677 0.90285 1.08350 1.19520 0.91679 0.85823 0.96575 1.86143 1.36662 1.12667 1.87727 1.21813 0.92612 0.82127 0.99323 0.88511 1.22145 1.01776 1.04078 0.93475 1.20444 0.87677 0.85194 0.82300 1.90553 1.17574 1.82225 1.59859 1.41407 1.07382 1.09438 1.54162 1.19941 0.79857 0.94933 1.54712 0.87027 1.26050 1.03777 0.94900 0.94663 1.70068 1.37681 0.99354 1.42774 0.85056 0.77686 0.79163 0.77702 1.17621 1.20736 1.20507 1.17441 0.89972 0.88334 0.91969 1.21055 1.00967 0.99941 0.94463 1.21117 0.96182 0.95652 1.00462 1.21210 1.00338 1.01295 0.93265 1.21076 0.99164 0.96423 0.96958 1.20816 0.98104 0.97122 0.97338 1.21372 0.92497 1.00211 1.10348 0.90153 0.91353 0.89275 0.82844 0.82380 0.85750 0.93052 0.89482 0.89059 0.91816 0.87965 0.84046 0.83350 0.84654 0.89987 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 10.01 71.23 0.71 -1.24 16 2 C -0.05 -1.24 5.88 -19.88 -0.12 -1.36 16 3 C -0.16 -3.36 9.70 22.28 0.22 -3.15 16 4 C -0.07 -1.63 10.04 22.25 0.22 -1.41 16 5 C -0.18 -5.49 9.99 22.37 0.22 -5.26 16 6 C 0.11 3.85 6.60 22.51 0.15 4.00 16 7 O -0.32 -13.75 9.34 -73.46 -0.69 -14.43 16 8 C 0.10 4.25 1.83 29.85 0.05 4.30 16 9 H 0.10 3.84 5.22 -2.39 -0.01 3.82 16 10 C -0.16 -5.88 9.01 71.98 0.65 -5.23 16 11 C 0.45 23.41 6.88 87.66 0.60 24.01 16 12 O -0.62 -36.02 16.28 15.90 0.26 -35.77 16 13 N -0.41 -20.90 2.69 -458.89 -1.23 -22.13 16 14 C -0.37 -17.71 7.26 84.02 0.61 -17.10 16 15 H 0.11 4.92 6.20 -2.91 -0.02 4.90 16 16 C 0.01 0.58 5.14 84.91 0.44 1.02 16 17 N -0.86 -43.51 10.65 21.65 0.23 -43.28 16 18 Si 0.98 37.24 29.57 68.60 2.03 39.27 16 19 H -0.25 -8.93 7.11 99.48 0.71 -8.23 16 20 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 21 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 22 C 0.21 10.87 2.52 38.22 0.10 10.97 16 23 C -0.14 -6.73 9.35 22.41 0.21 -6.52 16 24 C -0.12 -4.48 10.04 22.25 0.22 -4.26 16 25 C -0.14 -5.19 10.04 22.30 0.22 -4.96 16 26 C -0.12 -4.78 10.04 22.25 0.22 -4.55 16 27 C -0.11 -5.60 8.90 22.40 0.20 -5.41 16 28 C -0.23 -6.82 7.96 22.37 0.18 -6.64 16 29 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 31 H 0.09 1.11 8.08 -2.39 -0.02 1.09 16 32 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 34 H 0.12 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.09 2.69 6.92 -2.38 -0.02 2.68 16 37 H 0.09 3.60 6.28 -2.39 -0.01 3.59 16 38 H 0.27 13.12 8.32 -92.71 -0.77 12.35 16 39 H 0.10 4.73 8.06 -2.91 -0.02 4.70 16 40 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 42 H 0.14 4.57 8.06 -2.91 -0.02 4.55 16 43 H 0.08 4.24 8.06 -2.91 -0.02 4.22 16 44 H 0.13 3.85 5.39 -2.91 -0.02 3.83 16 Total: -1.00 -67.37 366.28 6.72 -60.65 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: 1.01 Total: 38.47 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: 5.11 Total: -22.78 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: -1.00 Total: -65.41 kcal Atomic # 8 Polarization: -49.77 SS G_CDS: -0.43 Total: -50.20 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Total: -67.37 6.72 -60.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072680085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.192 kcal (2) G-P(sol) polarization free energy of solvation -67.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds