Wall clock time and date at job start Tue Mar 31 2020 14:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46497 * 109.47376 * 2 1 4 4 C 1.36943 * 120.00140 * 275.97224 * 3 2 1 5 5 H 1.07996 * 120.00140 * 146.59674 * 4 3 2 6 6 C 1.38809 * 119.99618 * 326.59402 * 4 3 2 7 7 N 1.31615 * 120.00730 * 336.10850 * 6 4 3 8 8 Si 1.86805 * 119.99579 * 156.10462 * 6 4 3 9 9 H 1.48496 * 109.47245 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47005 * 120.00448 * 8 6 4 11 11 H 1.48496 * 109.47111 * 240.00076 * 8 6 4 12 12 S 1.65603 * 120.00085 * 95.97038 * 3 2 1 13 13 O 1.42099 * 106.40028 * 156.46331 * 12 3 2 14 14 O 1.42099 * 106.39869 * 23.54373 * 12 3 2 15 15 C 1.76202 * 107.21665 * 270.00179 * 12 3 2 16 16 C 1.38232 * 119.99777 * 269.71998 * 15 12 3 17 17 C 1.38234 * 119.99712 * 180.32120 * 16 15 12 18 18 C 1.38233 * 120.00092 * 359.93605 * 17 16 15 19 19 C 1.50705 * 120.00025 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.46947 * 120.02430 * 19 18 17 21 21 C 1.52998 * 109.47037 * 240.02228 * 19 18 17 22 22 C 1.52996 * 109.46928 * 0.02562 * 19 18 17 23 23 C 1.53004 * 109.47210 * 179.97438 * 22 19 18 24 24 C 1.38231 * 119.99977 * 0.06802 * 18 17 16 25 25 C 1.38231 * 120.00002 * 89.99911 * 15 12 3 26 26 H 1.09006 * 109.47525 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47050 * 299.99721 * 1 2 3 28 28 H 1.09002 * 109.47398 * 59.99595 * 1 2 3 29 29 H 1.09001 * 109.47050 * 240.00278 * 2 1 3 30 30 H 1.09002 * 109.47398 * 120.00405 * 2 1 3 31 31 H 0.96998 * 120.00715 * 179.97438 * 7 6 4 32 32 H 1.08003 * 120.00370 * 0.28739 * 16 15 12 33 33 H 1.08004 * 119.99666 * 179.97438 * 17 16 15 34 34 H 1.08990 * 109.47525 * 60.00042 * 20 19 18 35 35 H 1.09004 * 109.46702 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.46567 * 299.99532 * 20 19 18 37 37 H 1.09001 * 109.47327 * 59.99897 * 21 19 18 38 38 H 1.09004 * 109.46957 * 179.97438 * 21 19 18 39 39 H 1.09004 * 109.47285 * 299.99884 * 21 19 18 40 40 H 1.08993 * 109.48054 * 300.00049 * 22 19 18 41 41 H 1.09004 * 109.47327 * 60.00381 * 22 19 18 42 42 H 1.09001 * 109.47091 * 300.00181 * 23 22 19 43 43 H 1.09000 * 109.46878 * 59.99627 * 23 22 19 44 44 H 1.09004 * 109.47270 * 180.02562 * 23 22 19 45 45 H 1.07999 * 120.00011 * 179.97438 * 24 18 17 46 46 H 1.08002 * 120.00108 * 359.72399 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1302 2.0679 -1.1795 5 1 1.9553 3.1333 -1.2028 6 6 2.4686 1.3944 -2.3452 7 7 3.1245 0.2552 -2.2804 8 14 1.9929 2.1051 -4.0060 9 1 1.2675 3.3855 -3.8071 10 1 3.2179 2.3503 -4.8087 11 1 1.1157 1.1448 -4.7224 12 16 2.4350 2.1121 1.4264 13 8 3.3459 3.1508 1.0938 14 8 2.7470 1.0666 2.3368 15 6 0.9880 2.9003 2.0507 16 6 0.7104 4.2095 1.7048 17 6 -0.4213 4.8300 2.1999 18 6 -1.2760 4.1409 3.0398 19 6 -2.5101 4.8171 3.5791 20 6 -3.7523 4.0451 3.1299 21 6 -2.4508 4.8429 5.1077 22 6 -2.5801 6.2499 3.0471 23 6 -3.8334 6.9364 3.5941 24 6 -0.9983 2.8316 3.3856 25 6 0.1335 2.2113 2.8909 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.3607 -0.2156 -3.0950 32 1 1.3779 4.7479 1.0483 33 1 -0.6380 5.8531 1.9301 34 1 -3.7025 3.0244 3.5087 35 1 -4.6449 4.5345 3.5196 36 1 -3.7945 4.0268 2.0408 37 1 -1.5658 5.3929 5.4278 38 1 -3.3432 5.3325 5.4977 39 1 -2.4009 3.8221 5.4866 40 1 -1.6953 6.8001 3.3670 41 1 -2.6225 6.2315 1.9580 42 1 -4.7181 6.3862 3.2737 43 1 -3.7915 6.9547 4.6831 44 1 -3.8835 7.9571 3.2147 45 1 -1.6659 2.2933 4.0421 46 1 0.3505 1.1884 3.1611 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074967368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:58 Heat of formation + Delta-G solvation = -57.819569 kcal Electronic energy + Delta-G solvation = -26748.003545 eV Core-core repulsion = 23150.417348 eV Total energy + Delta-G solvation = -3597.586197 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.93071 -36.91425 -36.12649 -35.82866 -34.64997 -31.65173 -31.50878 -30.78483 -29.27798 -29.18789 -27.47437 -24.95705 -24.57755 -22.78828 -21.86700 -21.57089 -19.04268 -18.51780 -17.75770 -16.78469 -16.22175 -15.78826 -15.30992 -14.94071 -14.70330 -14.49700 -14.19803 -13.84975 -13.71129 -13.42813 -13.30288 -13.22866 -12.77387 -12.49188 -12.31796 -12.20957 -12.05907 -12.01309 -11.87521 -11.38898 -11.35181 -11.24080 -10.98780 -10.94538 -10.88483 -10.85332 -10.83192 -10.82124 -10.41804 -10.36706 -10.14701 -10.02828 -9.75660 -9.07667 -8.78301 -8.73456 -7.68911 -6.23087 -3.91353 1.11964 1.59073 1.59206 3.20863 3.29911 3.34066 3.70423 4.19104 4.40510 4.49456 4.53070 4.74266 4.80175 4.99450 5.05300 5.09732 5.14522 5.15590 5.23306 5.36633 5.44014 5.48667 5.58458 5.66930 5.68344 5.75431 5.81333 5.82067 5.88827 5.96575 6.00868 6.10440 6.15668 6.17874 6.22652 6.29106 6.39556 6.46811 6.53966 6.62830 6.66237 6.95644 7.12834 7.32998 7.44883 7.82451 8.46030 9.04018 9.41535 10.78754 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015922 B = 0.004071 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.165095 B = 6876.013264 C = 7460.438632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.109 3.891 3 N -0.841 5.841 4 C -0.286 4.286 5 H 0.091 0.909 6 C 0.039 3.961 7 N -0.858 5.858 8 Si 0.913 3.087 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.281 1.281 12 S 2.636 3.364 13 O -0.973 6.973 14 O -0.998 6.998 15 C -0.655 4.655 16 C -0.015 4.015 17 C -0.147 4.147 18 C -0.032 4.032 19 C -0.029 4.029 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.118 4.118 23 C -0.156 4.156 24 C -0.142 4.142 25 C -0.021 4.021 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.058 0.942 29 H 0.116 0.884 30 H 0.059 0.941 31 H 0.266 0.734 32 H 0.137 0.863 33 H 0.129 0.871 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.123 0.877 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.133 7.141 9.473 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 N -0.673 5.673 4 C -0.421 4.421 5 H 0.109 0.891 6 C -0.168 4.168 7 N -0.498 5.498 8 Si 0.739 3.261 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.207 1.207 12 S 2.732 3.268 13 O -0.962 6.962 14 O -0.988 6.988 15 C -0.739 4.739 16 C -0.034 4.034 17 C -0.166 4.166 18 C -0.032 4.032 19 C -0.029 4.029 20 C -0.197 4.197 21 C -0.197 4.197 22 C -0.155 4.155 23 C -0.213 4.213 24 C -0.161 4.161 25 C -0.040 4.040 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.134 0.866 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.141 0.859 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.247 7.054 9.901 17.980 hybrid contribution -0.902 0.458 -0.842 1.316 sum -14.149 7.511 9.059 18.403 Atomic orbital electron populations 1.22198 0.98770 0.99940 1.01306 1.21375 0.91602 0.84080 1.04755 1.52589 1.76615 1.20584 1.17520 1.19088 1.45171 0.93899 0.83932 0.89139 1.25276 0.95154 0.96852 0.99503 1.69976 1.34134 1.16937 1.28737 0.86105 0.78489 0.79180 0.82286 1.19267 1.20811 1.20690 1.04476 0.73950 0.73892 0.74474 1.93438 1.59716 1.59443 1.83641 1.93411 1.82902 1.56005 1.66438 1.31477 1.24118 1.06330 1.11925 1.20949 0.95307 0.92572 0.94555 1.21226 0.95369 1.00477 0.99520 1.19987 0.94654 0.93840 0.94710 1.19580 0.92697 0.94896 0.95706 1.21939 0.96223 0.99871 1.01709 1.21942 1.01991 1.02179 0.93628 1.21688 0.98571 0.94404 1.00851 1.21907 0.97998 1.00151 1.01207 1.20979 0.98111 0.94911 1.02104 1.20862 0.91959 0.99151 0.92078 0.93460 0.94388 0.92290 0.86642 0.92298 0.92358 0.84471 0.85314 0.92347 0.92004 0.92302 0.92456 0.91968 0.92354 0.91502 0.91385 0.92397 0.92454 0.92853 0.85905 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 10.20 37.15 0.38 -2.71 16 2 C 0.11 2.47 6.01 -4.05 -0.02 2.45 16 3 N -0.84 -20.63 2.85 -59.92 -0.17 -20.80 16 4 C -0.29 -7.41 8.87 -15.06 -0.13 -7.54 16 5 H 0.09 2.28 7.94 -52.49 -0.42 1.87 16 6 C 0.04 1.01 4.98 -17.43 -0.09 0.92 16 7 N -0.86 -22.99 11.27 55.49 0.63 -22.36 16 8 Si 0.91 19.95 29.62 -169.99 -5.03 14.92 16 9 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 S 2.64 61.87 5.66 -107.50 -0.61 61.26 16 13 O -0.97 -25.37 16.49 -57.17 -0.94 -26.31 16 14 O -1.00 -24.60 15.83 -57.17 -0.91 -25.51 16 15 C -0.65 -12.70 5.97 -39.59 -0.24 -12.93 16 16 C -0.01 -0.26 9.52 -39.58 -0.38 -0.64 16 17 C -0.15 -2.15 8.98 -39.58 -0.36 -2.51 16 18 C -0.03 -0.42 4.76 -104.62 -0.50 -0.92 16 19 C -0.03 -0.29 0.63 -155.66 -0.10 -0.39 16 20 C -0.14 -1.29 7.93 37.16 0.29 -1.00 16 21 C -0.14 -1.25 7.93 37.16 0.29 -0.96 16 22 C -0.12 -1.07 3.65 -26.73 -0.10 -1.17 16 23 C -0.16 -1.15 9.21 37.16 0.34 -0.81 16 24 C -0.14 -2.01 8.71 -39.59 -0.34 -2.36 16 25 C -0.02 -0.37 8.52 -39.59 -0.34 -0.70 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.67 7.11 -51.93 -0.37 0.30 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.12 2.86 5.31 -51.93 -0.28 2.58 16 30 H 0.06 1.30 6.90 -51.93 -0.36 0.95 16 31 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.14 2.42 7.62 -52.48 -0.40 2.02 16 33 H 0.13 1.55 5.90 -52.48 -0.31 1.24 16 34 H 0.06 0.53 7.39 -51.93 -0.38 0.15 16 35 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 39 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 40 H 0.07 0.61 7.51 -51.93 -0.39 0.22 16 41 H 0.07 0.64 7.51 -51.93 -0.39 0.25 16 42 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 43 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.12 1.41 7.10 -52.49 -0.37 1.04 16 46 H 0.13 2.19 7.62 -52.49 -0.40 1.79 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -30.91 368.95 -9.79 -40.70 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -7.03 Total: 3.81 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: -1.28 Total: -31.27 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.45 Total: -43.16 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -1.85 Total: -51.82 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Atomic # 16 Polarization: 61.87 SS G_CDS: -0.61 Total: 61.26 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.91 -9.79 -40.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074967368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.118 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds