Wall clock time and date at job start Tue Mar 31 2020 14:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46497 * 109.47376 * 2 1 4 4 C 1.36943 * 120.00140 * 275.97224 * 3 2 1 5 5 H 1.07996 * 120.00140 * 146.59674 * 4 3 2 6 6 C 1.38809 * 119.99618 * 326.59402 * 4 3 2 7 7 N 1.31615 * 120.00730 * 336.10850 * 6 4 3 8 8 Si 1.86805 * 119.99579 * 156.10462 * 6 4 3 9 9 H 1.48496 * 109.47245 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47005 * 120.00448 * 8 6 4 11 11 H 1.48496 * 109.47111 * 240.00076 * 8 6 4 12 12 S 1.65603 * 120.00085 * 95.97038 * 3 2 1 13 13 O 1.42099 * 106.40028 * 156.46331 * 12 3 2 14 14 O 1.42099 * 106.39869 * 23.54373 * 12 3 2 15 15 C 1.76202 * 107.21665 * 270.00179 * 12 3 2 16 16 C 1.38232 * 119.99777 * 269.71998 * 15 12 3 17 17 C 1.38234 * 119.99712 * 180.32120 * 16 15 12 18 18 C 1.38233 * 120.00092 * 359.93605 * 17 16 15 19 19 C 1.50705 * 120.00025 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.46947 * 120.02430 * 19 18 17 21 21 C 1.52998 * 109.47037 * 240.02228 * 19 18 17 22 22 C 1.52996 * 109.46928 * 0.02562 * 19 18 17 23 23 C 1.53004 * 109.47210 * 179.97438 * 22 19 18 24 24 C 1.38231 * 119.99977 * 0.06802 * 18 17 16 25 25 C 1.38231 * 120.00002 * 89.99911 * 15 12 3 26 26 H 1.09006 * 109.47525 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47050 * 299.99721 * 1 2 3 28 28 H 1.09002 * 109.47398 * 59.99595 * 1 2 3 29 29 H 1.09001 * 109.47050 * 240.00278 * 2 1 3 30 30 H 1.09002 * 109.47398 * 120.00405 * 2 1 3 31 31 H 0.96998 * 120.00715 * 179.97438 * 7 6 4 32 32 H 1.08003 * 120.00370 * 0.28739 * 16 15 12 33 33 H 1.08004 * 119.99666 * 179.97438 * 17 16 15 34 34 H 1.08990 * 109.47525 * 60.00042 * 20 19 18 35 35 H 1.09004 * 109.46702 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.46567 * 299.99532 * 20 19 18 37 37 H 1.09001 * 109.47327 * 59.99897 * 21 19 18 38 38 H 1.09004 * 109.46957 * 179.97438 * 21 19 18 39 39 H 1.09004 * 109.47285 * 299.99884 * 21 19 18 40 40 H 1.08993 * 109.48054 * 300.00049 * 22 19 18 41 41 H 1.09004 * 109.47327 * 60.00381 * 22 19 18 42 42 H 1.09001 * 109.47091 * 300.00181 * 23 22 19 43 43 H 1.09000 * 109.46878 * 59.99627 * 23 22 19 44 44 H 1.09004 * 109.47270 * 180.02562 * 23 22 19 45 45 H 1.07999 * 120.00011 * 179.97438 * 24 18 17 46 46 H 1.08002 * 120.00108 * 359.72399 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1302 2.0679 -1.1795 5 1 1.9553 3.1333 -1.2028 6 6 2.4686 1.3944 -2.3452 7 7 3.1245 0.2552 -2.2804 8 14 1.9929 2.1051 -4.0060 9 1 1.2675 3.3855 -3.8071 10 1 3.2179 2.3503 -4.8087 11 1 1.1157 1.1448 -4.7224 12 16 2.4350 2.1121 1.4264 13 8 3.3459 3.1508 1.0938 14 8 2.7470 1.0666 2.3368 15 6 0.9880 2.9003 2.0507 16 6 0.7104 4.2095 1.7048 17 6 -0.4213 4.8300 2.1999 18 6 -1.2760 4.1409 3.0398 19 6 -2.5101 4.8171 3.5791 20 6 -3.7523 4.0451 3.1299 21 6 -2.4508 4.8429 5.1077 22 6 -2.5801 6.2499 3.0471 23 6 -3.8334 6.9364 3.5941 24 6 -0.9983 2.8316 3.3856 25 6 0.1335 2.2113 2.8909 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.3607 -0.2156 -3.0950 32 1 1.3779 4.7479 1.0483 33 1 -0.6380 5.8531 1.9301 34 1 -3.7025 3.0244 3.5087 35 1 -4.6449 4.5345 3.5196 36 1 -3.7945 4.0268 2.0408 37 1 -1.5658 5.3929 5.4278 38 1 -3.3432 5.3325 5.4977 39 1 -2.4009 3.8221 5.4866 40 1 -1.6953 6.8001 3.3670 41 1 -2.6225 6.2315 1.9580 42 1 -4.7181 6.3862 3.2737 43 1 -3.7915 6.9547 4.6831 44 1 -3.8835 7.9571 3.2147 45 1 -1.6659 2.2933 4.0421 46 1 0.3505 1.1884 3.1611 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074967368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:57 Heat of formation + Delta-G solvation = -75.552368 kcal Electronic energy + Delta-G solvation = -26748.772496 eV Core-core repulsion = 23150.417348 eV Total energy + Delta-G solvation = -3598.355149 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.99787 -38.05481 -37.90415 -37.68563 -36.59854 -33.56631 -32.50825 -31.98249 -30.94329 -30.19853 -28.14622 -26.50916 -25.82465 -24.00010 -23.33836 -22.94209 -20.43734 -19.81786 -19.36320 -18.52031 -18.11142 -16.89679 -16.82359 -16.38606 -15.94834 -15.63646 -15.61217 -15.25646 -14.76101 -14.57925 -14.51083 -14.40605 -14.34609 -14.03791 -13.75959 -13.46205 -13.13261 -13.00160 -12.87951 -12.86618 -12.80994 -12.70627 -12.66985 -12.60246 -12.38401 -12.11613 -12.07256 -11.95696 -11.90032 -11.58891 -11.50475 -11.40000 -11.23576 -10.92119 -10.06329 -9.98985 -9.59682 -8.17613 -5.92286 -0.32382 -0.07244 0.33924 1.47182 1.50030 1.62654 2.28212 2.49570 2.75168 2.92785 3.20265 3.51747 3.53218 3.71610 3.96373 4.04174 4.06408 4.29642 4.34452 4.39840 4.47758 4.52410 4.63403 4.70533 4.72812 4.73866 4.82217 4.85676 4.89136 4.96904 4.99747 5.03503 5.12026 5.15775 5.18610 5.19905 5.26616 5.28069 5.30891 5.47346 5.48993 5.51218 5.62183 5.63733 5.90492 5.95313 6.51199 7.08217 7.45637 8.84326 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015922 B = 0.004071 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.165095 B = 6876.013264 C = 7460.438632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.103 3.897 3 N -0.853 5.853 4 C -0.306 4.306 5 H 0.088 0.912 6 C -0.003 4.003 7 N -0.892 5.892 8 Si 0.975 3.025 9 H -0.260 1.260 10 H -0.284 1.284 11 H -0.272 1.272 12 S 2.636 3.364 13 O -1.012 7.012 14 O -1.021 7.021 15 C -0.667 4.667 16 C -0.034 4.034 17 C -0.144 4.144 18 C -0.019 4.019 19 C -0.027 4.027 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.121 4.121 23 C -0.152 4.152 24 C -0.134 4.134 25 C -0.033 4.033 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.269 0.731 32 H 0.127 0.873 33 H 0.155 0.845 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.157 0.843 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.697 8.341 10.450 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.023 4.023 3 N -0.685 5.685 4 C -0.440 4.440 5 H 0.105 0.895 6 C -0.207 4.207 7 N -0.532 5.532 8 Si 0.799 3.201 9 H -0.184 1.184 10 H -0.210 1.210 11 H -0.197 1.197 12 S 2.739 3.261 13 O -1.002 7.002 14 O -1.011 7.011 15 C -0.756 4.756 16 C -0.054 4.054 17 C -0.162 4.162 18 C -0.019 4.019 19 C -0.027 4.027 20 C -0.197 4.197 21 C -0.197 4.197 22 C -0.158 4.158 23 C -0.209 4.209 24 C -0.153 4.153 25 C -0.053 4.053 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.173 0.827 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.175 0.825 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.764 8.219 10.853 21.596 hybrid contribution 0.131 0.146 -1.002 1.021 sum -16.633 8.365 9.851 21.064 Atomic orbital electron populations 1.22077 0.95725 1.01830 1.01461 1.21415 0.94178 0.83229 1.03492 1.52676 1.77091 1.21209 1.17505 1.19293 1.45754 0.94083 0.84903 0.89451 1.26099 0.94780 0.97202 1.02650 1.70078 1.35129 1.18241 1.29745 0.85157 0.78089 0.78937 0.77896 1.18350 1.21011 1.19705 1.03862 0.74919 0.73282 0.74043 1.93375 1.62471 1.60177 1.84225 1.93365 1.84170 1.56968 1.66576 1.30656 1.23256 1.07183 1.14552 1.21023 0.96716 0.92207 0.95414 1.21518 0.94093 1.01629 0.98981 1.20491 0.95162 0.93493 0.92776 1.19678 0.91233 0.95240 0.96523 1.21958 0.96386 1.00176 1.01218 1.21964 1.02759 1.02643 0.92379 1.21711 0.99546 0.93895 1.00649 1.21884 0.97142 1.00275 1.01628 1.21328 0.97127 0.95296 1.01524 1.21016 0.92713 0.99434 0.92095 0.90648 0.93122 0.93144 0.88749 0.92644 0.92106 0.85539 0.82746 0.91992 0.89961 0.93223 0.93104 0.89931 0.92002 0.91729 0.91863 0.91784 0.91690 0.92428 0.82536 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.69 10.20 71.98 0.73 -4.95 16 2 C 0.10 4.83 6.01 86.38 0.52 5.35 16 3 N -0.85 -43.37 2.85 -343.47 -0.98 -44.35 16 4 C -0.31 -16.36 8.87 84.03 0.75 -15.62 16 5 H 0.09 4.59 7.94 -2.91 -0.02 4.57 16 6 C 0.00 -0.18 4.98 84.86 0.42 0.25 16 7 N -0.89 -49.18 11.27 21.65 0.24 -48.93 16 8 Si 0.98 41.32 29.62 68.60 2.03 43.35 16 9 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 12 S 2.64 129.17 5.66 -56.49 -0.32 128.85 16 13 O -1.01 -55.72 16.49 -128.00 -2.11 -57.83 16 14 O -1.02 -52.40 15.83 -128.00 -2.03 -54.43 16 15 C -0.67 -26.17 5.97 22.27 0.13 -26.04 16 16 C -0.03 -1.22 9.52 22.27 0.21 -1.01 16 17 C -0.14 -3.94 8.98 22.27 0.20 -3.74 16 18 C -0.02 -0.45 4.76 -19.87 -0.09 -0.54 16 19 C -0.03 -0.44 0.63 -52.93 -0.03 -0.47 16 20 C -0.14 -2.01 7.93 71.98 0.57 -1.44 16 21 C -0.14 -1.94 7.93 71.98 0.57 -1.37 16 22 C -0.12 -1.78 3.65 30.59 0.11 -1.67 16 23 C -0.15 -1.67 9.21 71.98 0.66 -1.01 16 24 C -0.13 -3.42 8.71 22.27 0.19 -3.23 16 25 C -0.03 -1.10 8.52 22.27 0.19 -0.91 16 26 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 27 H 0.05 1.74 7.11 -2.39 -0.02 1.72 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.09 4.85 5.31 -2.39 -0.01 4.83 16 30 H 0.06 2.55 6.90 -2.39 -0.02 2.53 16 31 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 32 H 0.13 4.66 7.62 -2.91 -0.02 4.64 16 33 H 0.16 3.37 5.90 -2.91 -0.02 3.35 16 34 H 0.06 0.85 7.39 -2.39 -0.02 0.84 16 35 H 0.08 0.87 6.43 -2.38 -0.02 0.86 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.84 6.43 -2.38 -0.02 0.82 16 39 H 0.06 0.82 7.39 -2.39 -0.02 0.81 16 40 H 0.06 0.99 7.51 -2.39 -0.02 0.97 16 41 H 0.06 1.00 7.51 -2.38 -0.02 0.98 16 42 H 0.06 0.63 6.43 -2.39 -0.02 0.62 16 43 H 0.06 0.62 6.43 -2.39 -0.02 0.61 16 44 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.16 2.93 7.10 -2.91 -0.02 2.91 16 46 H 0.14 4.36 7.62 -2.91 -0.02 4.34 16 Total: -1.00 -69.25 368.95 2.95 -66.30 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.97 Total: 23.43 kcal Atomic # 6 Polarization: -61.54 SS G_CDS: 5.14 Total: -56.40 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -0.73 Total: -93.28 kcal Atomic # 8 Polarization: -108.12 SS G_CDS: -4.14 Total: -112.26 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 129.17 SS G_CDS: -0.32 Total: 128.85 kcal Total: -69.25 2.95 -66.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074967368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.250 kcal (2) G-P(sol) polarization free energy of solvation -69.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds