Wall clock time and date at job start Tue Mar 31 2020 14:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.52997 * 109.47317 * 60.00177 * 3 2 1 5 5 C 1.52997 * 109.47269 * 299.99832 * 3 2 1 6 6 C 1.50706 * 109.46573 * 180.02562 * 3 2 1 7 7 C 1.38233 * 120.00109 * 359.72323 * 6 3 2 8 8 C 1.38238 * 119.99754 * 179.76611 * 7 6 3 9 9 C 1.38234 * 120.00016 * 0.50732 * 8 7 6 10 10 S 1.76198 * 120.00052 * 179.72466 * 9 8 7 11 11 O 1.42099 * 106.40142 * 23.56240 * 10 9 8 12 12 O 1.42106 * 106.39975 * 156.48479 * 10 9 8 13 13 N 1.65598 * 107.21623 * 270.02104 * 10 9 8 14 14 C 1.46503 * 119.99911 * 65.00078 * 13 10 9 15 15 H 1.09000 * 109.47097 * 335.00104 * 14 13 10 16 16 C 1.53005 * 109.47156 * 94.99769 * 14 13 10 17 17 C 1.50696 * 109.47505 * 214.99750 * 14 13 10 18 18 H 1.08007 * 119.99682 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00711 * 180.02562 * 17 14 13 20 20 N 1.31515 * 119.99241 * 359.97438 * 19 17 14 21 21 Si 1.86793 * 120.00506 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47373 * 59.99634 * 21 19 17 23 23 H 1.48505 * 109.47184 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47126 * 299.99528 * 21 19 17 25 25 C 1.38238 * 120.00063 * 359.74632 * 9 8 7 26 26 C 1.38235 * 120.00108 * 0.02562 * 25 9 8 27 27 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 28 28 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 30 30 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 31 31 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.47153 * 299.99641 * 4 3 2 34 34 H 1.08996 * 109.46952 * 59.99813 * 4 3 2 35 35 H 1.09000 * 109.47140 * 300.00547 * 5 3 2 36 36 H 1.09001 * 109.47230 * 59.99691 * 5 3 2 37 37 H 1.09001 * 109.47375 * 180.02562 * 5 3 2 38 38 H 1.08004 * 119.99934 * 0.02562 * 7 6 3 39 39 H 1.07999 * 119.99924 * 180.23621 * 8 7 6 40 40 H 0.96998 * 120.00693 * 244.99789 * 13 10 9 41 41 H 1.08998 * 109.47291 * 179.97438 * 16 14 13 42 42 H 1.08998 * 109.47057 * 300.00376 * 16 14 13 43 43 H 1.09008 * 109.47125 * 60.00049 * 16 14 13 44 44 H 0.97003 * 120.00012 * 180.02562 * 20 19 17 45 45 H 1.08000 * 120.00578 * 179.97438 * 25 9 8 46 46 H 1.07999 * 120.00165 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1638 1.2492 5 6 1.5301 2.1637 -1.2492 6 6 3.5471 1.4424 -0.0006 7 6 4.2382 0.2452 0.0047 8 6 5.6206 0.2452 -0.0008 9 6 6.3118 1.4423 -0.0010 10 16 8.0738 1.4422 -0.0006 11 8 8.4751 0.1926 -0.5451 12 8 8.4751 2.6921 -0.5448 13 7 8.5636 1.4421 1.5813 14 6 8.2680 0.2921 2.4395 15 1 7.3921 -0.2315 2.0564 16 6 9.4668 -0.6586 2.4491 17 6 7.9942 0.7694 3.8424 18 1 8.0366 1.8239 4.0719 19 6 7.6907 -0.1401 4.8332 20 7 7.6396 -1.4242 4.5537 21 14 7.3507 0.4517 6.5720 22 1 6.1866 1.3736 6.5624 23 1 7.0524 -0.7142 7.4422 24 1 8.5435 1.1659 7.0940 25 6 5.6207 2.6395 -0.0010 26 6 4.2383 2.6396 -0.0003 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8938 3.1913 1.2494 33 1 0.4401 2.1638 1.2492 34 1 1.8934 1.6499 2.1392 35 1 1.8934 1.6499 -2.1392 36 1 0.4401 2.1637 -1.2493 37 1 1.8938 3.1913 -1.2495 38 1 3.6981 -0.6901 0.0089 39 1 6.1605 -0.6901 -0.0005 40 1 9.0462 2.2033 1.9397 41 1 9.2471 -1.5140 3.0879 42 1 9.6648 -1.0038 1.4343 43 1 10.3428 -0.1350 2.8321 44 1 7.4257 -2.0641 5.2507 45 1 6.1606 3.5748 -0.0007 46 1 3.6983 3.5749 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074968088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:20 Heat of formation + Delta-G solvation = -72.274095 kcal Electronic energy + Delta-G solvation = -26436.126713 eV Core-core repulsion = 22837.913721 eV Total energy + Delta-G solvation = -3598.212992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.96370 -36.95074 -36.67936 -35.40963 -35.25516 -32.19532 -31.54609 -30.85298 -29.32472 -28.25914 -27.44671 -25.21937 -24.96838 -22.89320 -21.93350 -20.92243 -19.24928 -18.74665 -17.68814 -17.20218 -16.14726 -15.85493 -15.50216 -15.07616 -14.90180 -14.64901 -14.36012 -13.85520 -13.69731 -13.58840 -13.38304 -13.27448 -12.62610 -12.48327 -12.22710 -12.18341 -12.05813 -12.00881 -11.68550 -11.57301 -11.49627 -11.35855 -11.30922 -11.15336 -10.98490 -10.93146 -10.81685 -10.60127 -10.42072 -10.33043 -10.26114 -10.10635 -9.19613 -8.92797 -8.78763 -8.61745 -8.29183 -6.14442 -4.22390 0.93764 1.20384 1.54389 3.24265 3.29409 3.31322 3.56026 3.86932 4.33587 4.35827 4.42307 4.50908 4.77960 4.83128 5.05268 5.12127 5.17313 5.17847 5.20364 5.27697 5.38816 5.51145 5.51837 5.61775 5.70893 5.75451 5.78628 5.87366 5.89194 5.94459 5.97805 6.14470 6.17975 6.22036 6.34017 6.36697 6.42432 6.62789 6.83351 7.05711 7.05982 7.09856 7.57696 7.70382 7.82589 8.03259 8.27260 8.80444 9.43815 10.91171 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010395 B = 0.004758 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.957572 B = 5883.061772 C = 7546.379730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.030 4.030 4 C -0.142 4.142 5 C -0.140 4.140 6 C -0.023 4.023 7 C -0.143 4.143 8 C -0.007 4.007 9 C -0.669 4.669 10 S 2.689 3.311 11 O -0.965 6.965 12 O -0.984 6.984 13 N -1.100 6.100 14 C 0.275 3.725 15 H 0.041 0.959 16 C -0.159 4.159 17 C -0.525 4.525 18 H 0.063 0.937 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.017 4.017 26 C -0.142 4.142 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.409 0.591 41 H 0.092 0.908 42 H 0.026 0.974 43 H 0.032 0.968 44 H 0.265 0.735 45 H 0.135 0.865 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.528 4.870 -8.562 15.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.030 4.030 4 C -0.199 4.199 5 C -0.197 4.197 6 C -0.023 4.023 7 C -0.162 4.162 8 C -0.027 4.027 9 C -0.755 4.755 10 S 2.778 3.222 11 O -0.955 6.955 12 O -0.975 6.975 13 N -0.861 5.861 14 C 0.171 3.829 15 H 0.059 0.941 16 C -0.218 4.218 17 C -0.565 4.565 18 H 0.081 0.919 19 C -0.137 4.137 20 N -0.525 5.525 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.036 4.036 26 C -0.161 4.161 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.243 0.757 41 H 0.110 0.890 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.075 0.925 45 H 0.153 0.847 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.149 4.509 -9.284 15.941 hybrid contribution -0.691 0.567 1.602 1.834 sum -12.841 5.076 -7.682 15.800 Atomic orbital electron populations 1.21901 0.95733 1.01617 1.01979 1.21703 0.95972 0.95358 1.02603 1.19608 0.90426 0.96458 0.96527 1.21949 1.00911 1.00282 0.96717 1.21939 1.01013 1.00202 0.96536 1.20063 0.94797 0.93393 0.94050 1.21250 0.94120 0.98096 1.02723 1.20979 0.94628 0.96845 0.90198 1.31067 1.27895 0.99279 1.17213 1.01844 0.73748 0.73255 0.73372 1.93558 1.80370 1.44099 1.77427 1.93512 1.81744 1.44262 1.77954 1.55552 1.70810 1.29774 1.29941 1.18525 0.93891 0.81085 0.89411 0.94113 1.22245 0.98221 1.01921 0.99430 1.21252 1.48452 0.93765 0.93010 0.91873 1.24897 0.94996 0.94825 0.99024 1.69867 1.48019 1.00864 1.33700 0.86556 0.78836 0.78181 0.83816 1.20274 1.21170 1.20123 1.20821 0.94488 0.96532 0.91778 1.20984 0.94005 0.97696 1.03420 0.92503 0.92803 0.92366 0.91486 0.91173 0.92359 0.91929 0.92074 0.92455 0.91892 0.92376 0.84992 0.84226 0.75724 0.88992 0.95541 0.94897 0.92538 0.84674 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.21 37.16 0.34 -0.89 16 2 C -0.12 -1.15 3.65 -26.73 -0.10 -1.24 16 3 C -0.03 -0.31 0.63 -155.66 -0.10 -0.41 16 4 C -0.14 -1.41 7.94 37.16 0.29 -1.11 16 5 C -0.14 -1.24 7.93 37.16 0.29 -0.95 16 6 C -0.02 -0.30 4.76 -104.62 -0.50 -0.80 16 7 C -0.14 -2.12 8.98 -39.58 -0.36 -2.47 16 8 C -0.01 -0.13 8.90 -39.58 -0.35 -0.48 16 9 C -0.67 -11.86 5.82 -39.58 -0.23 -12.09 16 10 S 2.69 51.79 5.65 -107.50 -0.61 51.18 16 11 O -0.96 -20.78 16.54 -57.17 -0.95 -21.73 16 12 O -0.98 -19.69 17.28 -57.17 -0.99 -20.68 16 13 N -1.10 -22.34 5.46 -5.88 -0.03 -22.37 16 14 C 0.27 6.57 2.76 -69.08 -0.19 6.38 16 15 H 0.04 1.02 7.23 -51.93 -0.38 0.65 16 16 C -0.16 -3.81 9.29 37.16 0.35 -3.46 16 17 C -0.53 -13.49 8.76 -34.44 -0.30 -13.80 16 18 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 19 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -23.92 11.32 55.43 0.63 -23.29 16 21 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 C -0.02 -0.27 9.52 -39.58 -0.38 -0.64 16 26 C -0.14 -1.96 8.71 -39.58 -0.34 -2.30 16 27 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 30 H 0.07 0.63 7.52 -51.93 -0.39 0.24 16 31 H 0.07 0.74 7.50 -51.93 -0.39 0.35 16 32 H 0.06 0.56 7.39 -51.93 -0.38 0.18 16 33 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 37 H 0.06 0.50 7.39 -51.93 -0.38 0.12 16 38 H 0.13 1.66 5.90 -52.48 -0.31 1.35 16 39 H 0.14 2.39 7.62 -52.49 -0.40 1.99 16 40 H 0.41 7.54 8.83 -34.47 -0.30 7.24 16 41 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 42 H 0.03 0.60 7.64 -51.93 -0.40 0.20 16 43 H 0.03 0.75 8.14 -51.92 -0.42 0.32 16 44 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 45 H 0.14 1.94 7.62 -52.49 -0.40 1.54 16 46 H 0.13 1.39 7.10 -52.49 -0.37 1.01 16 LS Contribution 371.48 15.07 5.60 5.60 Total: -1.00 -30.52 371.48 -10.02 -40.54 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.99 Total: 8.08 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: -1.66 Total: -32.66 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.60 Total: -45.66 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -1.93 Total: -42.40 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 51.79 SS G_CDS: -0.61 Total: 51.18 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.52 -10.02 -40.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074968088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.732 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds