Wall clock time and date at job start Tue Mar 31 2020 14:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.52997 * 109.47317 * 60.00177 * 3 2 1 5 5 C 1.52997 * 109.47269 * 299.99832 * 3 2 1 6 6 C 1.50706 * 109.46573 * 180.02562 * 3 2 1 7 7 C 1.38233 * 120.00109 * 359.72323 * 6 3 2 8 8 C 1.38238 * 119.99754 * 179.76611 * 7 6 3 9 9 C 1.38234 * 120.00016 * 0.50732 * 8 7 6 10 10 S 1.76198 * 120.00052 * 179.72466 * 9 8 7 11 11 O 1.42099 * 106.40142 * 23.56240 * 10 9 8 12 12 O 1.42106 * 106.39975 * 156.48479 * 10 9 8 13 13 N 1.65598 * 107.21623 * 270.02104 * 10 9 8 14 14 C 1.46503 * 119.99911 * 65.00078 * 13 10 9 15 15 H 1.09000 * 109.47097 * 335.00104 * 14 13 10 16 16 C 1.53005 * 109.47156 * 94.99769 * 14 13 10 17 17 C 1.50696 * 109.47505 * 214.99750 * 14 13 10 18 18 H 1.08007 * 119.99682 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00711 * 180.02562 * 17 14 13 20 20 N 1.31515 * 119.99241 * 359.97438 * 19 17 14 21 21 Si 1.86793 * 120.00506 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47373 * 59.99634 * 21 19 17 23 23 H 1.48505 * 109.47184 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47126 * 299.99528 * 21 19 17 25 25 C 1.38238 * 120.00063 * 359.74632 * 9 8 7 26 26 C 1.38235 * 120.00108 * 0.02562 * 25 9 8 27 27 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 28 28 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 30 30 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 31 31 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.47153 * 299.99641 * 4 3 2 34 34 H 1.08996 * 109.46952 * 59.99813 * 4 3 2 35 35 H 1.09000 * 109.47140 * 300.00547 * 5 3 2 36 36 H 1.09001 * 109.47230 * 59.99691 * 5 3 2 37 37 H 1.09001 * 109.47375 * 180.02562 * 5 3 2 38 38 H 1.08004 * 119.99934 * 0.02562 * 7 6 3 39 39 H 1.07999 * 119.99924 * 180.23621 * 8 7 6 40 40 H 0.96998 * 120.00693 * 244.99789 * 13 10 9 41 41 H 1.08998 * 109.47291 * 179.97438 * 16 14 13 42 42 H 1.08998 * 109.47057 * 300.00376 * 16 14 13 43 43 H 1.09008 * 109.47125 * 60.00049 * 16 14 13 44 44 H 0.97003 * 120.00012 * 180.02562 * 20 19 17 45 45 H 1.08000 * 120.00578 * 179.97438 * 25 9 8 46 46 H 1.07999 * 120.00165 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1638 1.2492 5 6 1.5301 2.1637 -1.2492 6 6 3.5471 1.4424 -0.0006 7 6 4.2382 0.2452 0.0047 8 6 5.6206 0.2452 -0.0008 9 6 6.3118 1.4423 -0.0010 10 16 8.0738 1.4422 -0.0006 11 8 8.4751 0.1926 -0.5451 12 8 8.4751 2.6921 -0.5448 13 7 8.5636 1.4421 1.5813 14 6 8.2680 0.2921 2.4395 15 1 7.3921 -0.2315 2.0564 16 6 9.4668 -0.6586 2.4491 17 6 7.9942 0.7694 3.8424 18 1 8.0366 1.8239 4.0719 19 6 7.6907 -0.1401 4.8332 20 7 7.6396 -1.4242 4.5537 21 14 7.3507 0.4517 6.5720 22 1 6.1866 1.3736 6.5624 23 1 7.0524 -0.7142 7.4422 24 1 8.5435 1.1659 7.0940 25 6 5.6207 2.6395 -0.0010 26 6 4.2383 2.6396 -0.0003 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8938 3.1913 1.2494 33 1 0.4401 2.1638 1.2492 34 1 1.8934 1.6499 2.1392 35 1 1.8934 1.6499 -2.1392 36 1 0.4401 2.1637 -1.2493 37 1 1.8938 3.1913 -1.2495 38 1 3.6981 -0.6901 0.0089 39 1 6.1605 -0.6901 -0.0005 40 1 9.0462 2.2033 1.9397 41 1 9.2471 -1.5140 3.0879 42 1 9.6648 -1.0038 1.4343 43 1 10.3428 -0.1350 2.8321 44 1 7.4257 -2.0641 5.2507 45 1 6.1606 3.5748 -0.0007 46 1 3.6983 3.5749 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074968088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:20 Heat of formation + Delta-G solvation = -90.594963 kcal Electronic energy + Delta-G solvation = -26436.921165 eV Core-core repulsion = 22837.913721 eV Total energy + Delta-G solvation = -3599.007445 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.00925 -38.31466 -37.92391 -37.23434 -36.89456 -34.11566 -32.53626 -31.99538 -30.23858 -30.12846 -28.16239 -27.22755 -25.85442 -24.04145 -23.05058 -22.77005 -20.62671 -19.79403 -19.25246 -18.76187 -17.88616 -17.19922 -16.85009 -16.64215 -16.02524 -15.67872 -15.63171 -15.28933 -14.80362 -14.58284 -14.50656 -14.44873 -14.34894 -14.00138 -13.60888 -13.45671 -13.26337 -13.13587 -12.99823 -12.93195 -12.87044 -12.81055 -12.71976 -12.41633 -12.40190 -12.22957 -12.09896 -12.03850 -11.96931 -11.54964 -11.48173 -11.25668 -11.08762 -10.58542 -10.17105 -10.03171 -9.99312 -8.13012 -6.27310 -0.50804 -0.13814 0.33715 1.45653 1.46553 1.53848 2.12498 2.43325 2.52161 2.85918 3.16720 3.39209 3.51865 3.65943 3.93901 4.01859 4.02043 4.28121 4.32052 4.44558 4.50369 4.51767 4.60841 4.69560 4.80735 4.84029 4.87608 4.90694 4.97625 5.01739 5.10044 5.10602 5.11053 5.15713 5.16247 5.17347 5.24698 5.29345 5.45854 5.49532 5.59024 5.62115 5.74299 5.89095 6.02507 6.09699 6.41731 6.82858 7.42090 8.92176 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010395 B = 0.004758 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.957572 B = 5883.061772 C = 7546.379730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.028 4.028 4 C -0.141 4.141 5 C -0.138 4.138 6 C -0.017 4.017 7 C -0.150 4.150 8 C -0.031 4.031 9 C -0.684 4.684 10 S 2.704 3.296 11 O -0.993 6.993 12 O -0.991 6.991 13 N -1.100 6.100 14 C 0.279 3.721 15 H 0.025 0.975 16 C -0.153 4.153 17 C -0.539 4.539 18 H 0.067 0.933 19 C 0.020 3.980 20 N -0.913 5.913 21 Si 0.959 3.041 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.270 1.270 25 C -0.029 4.029 26 C -0.139 4.139 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.149 0.851 39 H 0.127 0.873 40 H 0.417 0.583 41 H 0.072 0.928 42 H 0.028 0.972 43 H 0.037 0.963 44 H 0.265 0.735 45 H 0.148 0.852 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.855 6.529 -8.384 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.028 4.028 4 C -0.198 4.198 5 C -0.195 4.195 6 C -0.017 4.017 7 C -0.168 4.168 8 C -0.051 4.051 9 C -0.774 4.774 10 S 2.796 3.204 11 O -0.984 6.984 12 O -0.982 6.982 13 N -0.860 5.860 14 C 0.174 3.826 15 H 0.043 0.957 16 C -0.213 4.213 17 C -0.578 4.578 18 H 0.086 0.914 19 C -0.180 4.180 20 N -0.552 5.552 21 Si 0.784 3.216 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.195 1.195 25 C -0.048 4.048 26 C -0.158 4.158 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.166 0.834 39 H 0.145 0.855 40 H 0.252 0.748 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.166 0.834 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.428 6.184 -9.110 18.149 hybrid contribution -0.051 0.054 1.486 1.488 sum -14.479 6.238 -7.624 17.513 Atomic orbital electron populations 1.21879 0.94100 1.02164 1.02714 1.21714 0.97413 0.94796 1.01963 1.19695 0.88050 0.97322 0.97780 1.21965 1.02261 1.00157 0.95443 1.21944 1.02244 1.00125 0.95177 1.20521 0.96789 0.92683 0.91729 1.21514 0.93246 0.99759 1.02329 1.21046 0.95920 0.96343 0.91786 1.30688 1.26270 1.00489 1.19915 1.01147 0.74297 0.72382 0.72561 1.93512 1.81622 1.45362 1.77856 1.93491 1.82534 1.44321 1.77841 1.55365 1.71572 1.29242 1.29853 1.18267 0.93116 0.81888 0.89365 0.95703 1.22158 0.98587 1.01420 0.99111 1.21554 1.48335 0.94064 0.93864 0.91443 1.25640 0.94867 0.94926 1.02576 1.69989 1.48672 1.01786 1.34721 0.85603 0.78803 0.77693 0.79479 1.19779 1.21048 1.19546 1.21115 0.95715 0.96194 0.91797 1.21374 0.93276 0.99242 1.01860 0.91332 0.92486 0.91969 0.91532 0.92526 0.91779 0.89857 0.93863 0.92853 0.89966 0.91763 0.83378 0.85489 0.74827 0.90912 0.95290 0.94337 0.92554 0.83415 0.82402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.21 71.98 0.66 -1.33 16 2 C -0.12 -2.11 3.65 30.60 0.11 -2.00 16 3 C -0.03 -0.52 0.63 -52.93 -0.03 -0.55 16 4 C -0.14 -2.40 7.94 71.98 0.57 -1.83 16 5 C -0.14 -1.97 7.93 71.98 0.57 -1.40 16 6 C -0.02 -0.43 4.76 -19.86 -0.09 -0.52 16 7 C -0.15 -4.40 8.98 22.27 0.20 -4.20 16 8 C -0.03 -1.11 8.90 22.27 0.20 -0.92 16 9 C -0.68 -24.54 5.82 22.27 0.13 -24.41 16 10 S 2.70 106.19 5.65 -56.49 -0.32 105.87 16 11 O -0.99 -44.28 16.54 -128.00 -2.12 -46.40 16 12 O -0.99 -39.64 17.28 -128.00 -2.21 -41.85 16 13 N -1.10 -45.32 5.46 -172.51 -0.94 -46.26 16 14 C 0.28 13.60 2.76 44.25 0.12 13.72 16 15 H 0.03 1.30 7.23 -2.39 -0.02 1.28 16 16 C -0.15 -7.53 9.29 71.98 0.67 -6.86 16 17 C -0.54 -27.76 8.76 25.60 0.22 -27.54 16 18 H 0.07 3.34 7.81 -2.91 -0.02 3.31 16 19 C 0.02 1.06 5.30 84.65 0.45 1.51 16 20 N -0.91 -49.92 11.32 21.45 0.24 -49.68 16 21 Si 0.96 41.36 29.54 68.60 2.03 43.38 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 C -0.03 -0.88 9.52 22.27 0.21 -0.67 16 26 C -0.14 -3.53 8.71 22.27 0.19 -3.33 16 27 H 0.07 0.75 6.43 -2.39 -0.02 0.73 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.77 6.43 -2.39 -0.02 0.76 16 30 H 0.07 1.15 7.52 -2.39 -0.02 1.13 16 31 H 0.06 1.13 7.50 -2.39 -0.02 1.11 16 32 H 0.06 1.01 7.39 -2.39 -0.02 1.00 16 33 H 0.08 1.08 6.43 -2.39 -0.02 1.07 16 34 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 0.89 6.43 -2.39 -0.02 0.87 16 37 H 0.06 0.85 7.39 -2.39 -0.02 0.84 16 38 H 0.15 3.72 5.90 -2.91 -0.02 3.70 16 39 H 0.13 4.67 7.62 -2.91 -0.02 4.64 16 40 H 0.42 15.44 8.83 -96.74 -0.85 14.59 16 41 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 42 H 0.03 1.35 7.64 -2.39 -0.02 1.33 16 43 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 44 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 45 H 0.15 4.03 7.62 -2.91 -0.02 4.01 16 46 H 0.16 2.91 7.10 -2.91 -0.02 2.89 16 Total: -1.00 -64.81 371.48 1.00 -63.82 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.13 Total: 31.44 kcal Atomic # 6 Polarization: -64.51 SS G_CDS: 4.19 Total: -60.32 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -0.70 Total: -95.94 kcal Atomic # 8 Polarization: -83.92 SS G_CDS: -4.33 Total: -88.25 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 16 Polarization: 106.19 SS G_CDS: -0.32 Total: 105.87 kcal Total: -64.81 1.00 -63.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074968088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.776 kcal (2) G-P(sol) polarization free energy of solvation -64.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds