Wall clock time and date at job start Tue Mar 31 2020 14:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47184 * 2 1 4 4 C 1.52997 * 109.47570 * 59.99950 * 3 2 1 5 5 C 1.53000 * 109.47063 * 299.99579 * 3 2 1 6 6 C 1.50706 * 109.46956 * 179.97438 * 3 2 1 7 7 C 1.38233 * 120.00000 * 180.02562 * 6 3 2 8 8 C 1.38234 * 120.00229 * 179.97438 * 7 6 3 9 9 C 1.38227 * 119.99884 * 0.02562 * 8 7 6 10 10 S 1.76204 * 120.00156 * 179.97438 * 9 8 7 11 11 O 1.42100 * 106.40208 * 336.46276 * 10 9 8 12 12 O 1.42097 * 106.40458 * 203.54020 * 10 9 8 13 13 N 1.65600 * 107.21414 * 90.00145 * 10 9 8 14 14 C 1.46495 * 120.00241 * 65.00504 * 13 10 9 15 15 H 1.08997 * 109.47441 * 24.99439 * 14 13 10 16 16 C 1.53004 * 109.47054 * 264.99485 * 14 13 10 17 17 C 1.50697 * 109.47520 * 144.99537 * 14 13 10 18 18 H 1.07999 * 120.00158 * 5.35070 * 17 14 13 19 19 C 1.37881 * 120.00462 * 185.34841 * 17 14 13 20 20 N 1.31519 * 119.99492 * 5.14741 * 19 17 14 21 21 Si 1.86797 * 120.00069 * 185.14791 * 19 17 14 22 22 H 1.48501 * 109.47243 * 85.00288 * 21 19 17 23 23 H 1.48507 * 109.46766 * 204.99906 * 21 19 17 24 24 H 1.48491 * 109.47366 * 324.99740 * 21 19 17 25 25 C 1.38236 * 120.00231 * 0.25452 * 9 8 7 26 26 C 1.38232 * 120.00355 * 0.02562 * 6 3 2 27 27 H 1.09003 * 109.46756 * 60.00284 * 1 2 3 28 28 H 1.08995 * 109.47177 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46918 * 300.00306 * 1 2 3 30 30 H 1.09004 * 109.47241 * 239.99750 * 2 1 3 31 31 H 1.09003 * 109.46756 * 119.99716 * 2 1 3 32 32 H 1.08995 * 109.47393 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.47021 * 300.00557 * 4 3 2 34 34 H 1.09003 * 109.47272 * 59.99732 * 4 3 2 35 35 H 1.08998 * 109.47232 * 299.99722 * 5 3 2 36 36 H 1.08997 * 109.47095 * 60.00486 * 5 3 2 37 37 H 1.09004 * 109.46978 * 180.02562 * 5 3 2 38 38 H 1.08008 * 119.99875 * 359.97438 * 7 6 3 39 39 H 1.08001 * 119.99915 * 180.02562 * 8 7 6 40 40 H 0.97000 * 119.99741 * 244.99545 * 13 10 9 41 41 H 1.08997 * 109.47156 * 294.96436 * 16 14 13 42 42 H 1.09006 * 109.46784 * 54.96916 * 16 14 13 43 43 H 1.09001 * 109.46961 * 174.96485 * 16 14 13 44 44 H 0.97003 * 119.99628 * 180.02562 * 20 19 17 45 45 H 1.07998 * 120.00261 * 179.72796 * 25 9 8 46 46 H 1.08007 * 119.99760 * 0.02562 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1638 1.2492 5 6 1.5301 2.1637 -1.2493 6 6 3.5471 1.4424 0.0006 7 6 4.2383 2.6395 0.0013 8 6 5.6206 2.6395 0.0024 9 6 6.3118 1.4424 0.0023 10 16 8.0738 1.4423 0.0031 11 8 8.4753 2.6922 -0.5408 12 8 8.4753 0.1928 -0.5415 13 7 8.5632 1.4418 1.5851 14 6 8.2675 0.2917 2.4430 15 1 8.1438 -0.5989 1.8269 16 6 6.9780 0.5554 3.2230 17 6 9.4046 0.0800 3.4091 18 1 10.2209 0.7862 3.4454 19 6 9.4028 -1.0152 4.2467 20 7 8.4627 -1.9280 4.1336 21 14 10.7355 -1.2024 5.5421 22 1 10.3501 -0.4478 6.7616 23 1 10.8988 -2.6393 5.8802 24 1 12.0171 -0.6694 5.0145 25 6 5.6206 0.2452 -0.0042 26 6 4.2383 0.2453 0.0006 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8931 3.1915 1.2489 33 1 0.4400 2.1637 1.2492 34 1 1.8934 1.6500 2.1392 35 1 1.8935 1.6498 -2.1392 36 1 0.4401 2.1637 -1.2493 37 1 1.8939 3.1912 -1.2495 38 1 3.6983 3.5749 0.0009 39 1 6.1606 3.5748 0.0033 40 1 9.0458 2.2030 1.9437 41 1 7.1306 1.3917 3.9053 42 1 6.1749 0.7966 2.5265 43 1 6.7097 -0.3341 3.7929 44 1 8.4613 -2.6983 4.7231 45 1 6.1606 -0.6900 -0.0087 46 1 3.6982 -0.6901 -0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074968089.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:24 Heat of formation + Delta-G solvation = -72.581571 kcal Electronic energy + Delta-G solvation = -26393.423819 eV Core-core repulsion = 22795.197494 eV Total energy + Delta-G solvation = -3598.226325 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.03613 -37.02712 -36.66617 -35.40772 -35.25067 -32.16200 -31.60345 -30.91375 -29.39303 -28.36897 -27.50664 -25.22457 -25.01260 -22.92671 -21.98323 -20.96339 -19.26543 -18.77570 -17.73473 -17.28007 -16.15064 -15.78134 -15.55283 -15.05879 -14.95598 -14.68201 -14.36807 -13.89814 -13.75842 -13.65058 -13.43947 -13.28630 -12.66045 -12.60219 -12.24704 -12.19821 -12.13811 -12.07334 -11.68939 -11.53376 -11.50372 -11.42798 -11.33748 -11.26683 -10.97556 -10.95504 -10.86918 -10.63676 -10.47621 -10.43984 -10.27733 -10.08127 -9.24149 -8.97893 -8.84802 -8.59841 -8.30134 -6.14327 -4.18617 0.89445 1.16506 1.47481 3.26843 3.33374 3.36306 3.51618 3.86820 4.32753 4.36737 4.38489 4.45384 4.72358 4.79711 4.99580 5.06275 5.12789 5.15972 5.20799 5.22871 5.34177 5.45459 5.46599 5.56900 5.65204 5.70316 5.74317 5.81159 5.83522 5.88421 5.92048 6.08714 6.12786 6.15506 6.31117 6.34607 6.36863 6.56673 6.72866 6.79311 6.95848 6.99394 7.55750 7.58326 7.85354 7.95448 8.25304 8.83684 9.46323 10.94271 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014700 B = 0.003801 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.330937 B = 7363.821249 C = 8541.878829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.030 4.030 4 C -0.141 4.141 5 C -0.140 4.140 6 C -0.023 4.023 7 C -0.143 4.143 8 C -0.018 4.018 9 C -0.669 4.669 10 S 2.688 3.312 11 O -0.984 6.984 12 O -0.962 6.962 13 N -1.099 6.099 14 C 0.267 3.733 15 H 0.056 0.944 16 C -0.153 4.153 17 C -0.522 4.522 18 H 0.064 0.936 19 C 0.065 3.935 20 N -0.888 5.888 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.007 4.007 26 C -0.144 4.144 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.409 0.591 41 H 0.036 0.964 42 H 0.018 0.982 43 H 0.077 0.923 44 H 0.264 0.736 45 H 0.141 0.859 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.883 6.755 -7.259 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.030 4.030 4 C -0.198 4.198 5 C -0.197 4.197 6 C -0.024 4.024 7 C -0.161 4.161 8 C -0.038 4.038 9 C -0.755 4.755 10 S 2.776 3.224 11 O -0.974 6.974 12 O -0.951 6.951 13 N -0.860 5.860 14 C 0.163 3.837 15 H 0.074 0.926 16 C -0.213 4.213 17 C -0.562 4.562 18 H 0.083 0.917 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.026 4.026 26 C -0.162 4.162 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.143 0.857 39 H 0.153 0.847 40 H 0.242 0.758 41 H 0.055 0.945 42 H 0.037 0.963 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.159 0.841 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.530 6.400 -7.998 18.604 hybrid contribution 0.157 0.135 1.339 1.355 sum -15.373 6.535 -6.659 17.982 Atomic orbital electron populations 1.21902 0.95712 1.01658 1.01987 1.21703 0.95996 0.95327 1.02608 1.19610 0.90420 0.96468 0.96529 1.21947 1.00983 1.00229 0.96661 1.21940 1.01037 1.00196 0.96541 1.20065 0.94797 0.93384 0.94112 1.20989 0.94005 0.97695 1.03460 1.20827 0.94448 0.96547 0.91928 1.31147 1.28083 0.99233 1.17021 1.01890 0.73703 0.73287 0.73482 1.93512 1.81683 1.44290 1.77926 1.93569 1.80224 1.44074 1.77282 1.55513 1.70623 1.29783 1.30052 1.18622 0.93808 0.81997 0.89264 0.92605 1.22241 0.97124 1.01933 0.99982 1.21187 1.06288 1.09346 1.19382 0.91743 1.24912 0.96197 0.95152 0.97513 1.69918 1.33658 1.10691 1.38284 0.86487 0.81939 0.77223 0.81620 1.20539 1.21156 1.19823 1.20999 0.94585 0.96954 0.90091 1.21261 0.94105 0.98097 1.02770 0.92484 0.92773 0.92375 0.91453 0.91205 0.92375 0.91908 0.92156 0.92427 0.91874 0.92381 0.85706 0.84669 0.75757 0.94470 0.96294 0.90423 0.92591 0.84128 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.21 37.16 0.34 -0.79 16 2 C -0.12 -1.05 3.65 -26.73 -0.10 -1.15 16 3 C -0.03 -0.29 0.63 -155.66 -0.10 -0.38 16 4 C -0.14 -1.25 7.93 37.16 0.29 -0.95 16 5 C -0.14 -1.15 7.94 37.16 0.29 -0.86 16 6 C -0.02 -0.29 4.76 -104.62 -0.50 -0.79 16 7 C -0.14 -1.81 8.71 -39.58 -0.34 -2.16 16 8 C -0.02 -0.27 9.52 -39.59 -0.38 -0.65 16 9 C -0.67 -11.29 4.94 -39.59 -0.20 -11.48 16 10 S 2.69 51.81 5.72 -107.50 -0.61 51.20 16 11 O -0.98 -19.64 17.28 -57.17 -0.99 -20.63 16 12 O -0.96 -21.52 16.61 -57.17 -0.95 -22.47 16 13 N -1.10 -22.25 5.46 -5.88 -0.03 -22.28 16 14 C 0.27 6.36 2.77 -69.08 -0.19 6.17 16 15 H 0.06 1.46 7.48 -51.93 -0.39 1.07 16 16 C -0.15 -3.40 9.29 37.16 0.35 -3.05 16 17 C -0.52 -13.72 8.69 -34.44 -0.30 -14.02 16 18 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 19 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 20 N -0.89 -24.33 11.98 55.43 0.66 -23.67 16 21 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 C -0.01 -0.12 8.72 -39.58 -0.35 -0.46 16 26 C -0.14 -1.98 8.98 -39.58 -0.36 -2.33 16 27 H 0.06 0.38 6.43 -51.93 -0.33 0.05 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 30 H 0.07 0.59 7.51 -51.93 -0.39 0.20 16 31 H 0.07 0.66 7.51 -51.93 -0.39 0.27 16 32 H 0.06 0.50 7.39 -51.93 -0.38 0.11 16 33 H 0.06 0.46 6.43 -51.92 -0.33 0.13 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 37 H 0.06 0.46 7.39 -51.93 -0.38 0.08 16 38 H 0.13 1.26 7.10 -52.48 -0.37 0.89 16 39 H 0.14 1.81 7.62 -52.49 -0.40 1.41 16 40 H 0.41 7.49 8.82 -34.47 -0.30 7.18 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.02 0.36 6.19 -51.93 -0.32 0.04 16 43 H 0.08 1.88 6.84 -51.93 -0.36 1.53 16 44 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.14 2.35 7.61 -52.49 -0.40 1.95 16 46 H 0.13 1.55 5.90 -52.48 -0.31 1.24 16 LS Contribution 370.71 15.07 5.59 5.59 Total: -1.00 -31.13 370.71 -9.94 -41.08 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.97 Total: 6.80 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: -1.62 Total: -31.25 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.63 Total: -45.95 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -1.94 Total: -43.09 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 51.81 SS G_CDS: -0.61 Total: 51.20 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.13 -9.94 -41.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074968089.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.505 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds